Xseg-Baseline / infer_seg_new_last2.log
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Solving dependencies
Installing conda packages
Empty environment created at prefix: /scratch/yuqian_fu/micromamba/envs/auto-mrhoiku7s7v7
Transaction
Prefix: /scratch/yuqian_fu/micromamba/envs/auto-mrhoiku7s7v7
No specs added or removed.
Package Version Build Channel Size
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Install:
─────────────────────────────────────────────────────────────────────────────────────────────
+ _libgcc_mutex 0.1 conda_forge conda-forge
+ _openmp_mutex 4.5 2_gnu conda-forge
+ bzip2 1.0.8 h4bc722e_7 conda-forge
+ ca-certificates 2024.8.30 hbcca054_0 conda-forge
+ ld_impl_linux-64 2.43 h712a8e2_2 conda-forge
+ libexpat 2.6.3 h5888daf_0 conda-forge
+ libffi 3.4.2 h7f98852_5 conda-forge
+ libgcc 14.2.0 h77fa898_1 conda-forge
+ libgcc-ng 14.2.0 h69a702a_1 conda-forge
+ libgomp 14.2.0 h77fa898_1 conda-forge
+ libnsl 2.0.1 hd590300_0 conda-forge
+ libsqlite 3.47.0 hadc24fc_0 conda-forge
+ libuuid 2.38.1 h0b41bf4_0 conda-forge
+ libxcrypt 4.4.36 hd590300_1 conda-forge
+ libzlib 1.3.1 hb9d3cd8_2 conda-forge
+ ncurses 6.5 he02047a_1 conda-forge
+ openssl 3.3.2 hb9d3cd8_0 conda-forge
+ pip 24.2 pyh8b19718_1 conda-forge
+ python 3.11.10 hc5c86c4_3_cpython conda-forge
+ readline 8.2 h8228510_1 conda-forge
+ setuptools 75.1.0 pyhd8ed1ab_0 conda-forge
+ tk 8.6.13 noxft_h4845f30_101 /work/conda/cache/conda-forge
+ tzdata 2024b hc8b5060_0 conda-forge
+ wheel 0.44.0 pyhd8ed1ab_0 conda-forge
+ xz 5.2.6 h166bdaf_0 conda-forge
Summary:
Install: 25 packages
Total download: 0 B
─────────────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Linking _libgcc_mutex-0.1-conda_forge
Linking ld_impl_linux-64-2.43-h712a8e2_2
Linking ca-certificates-2024.8.30-hbcca054_0
Linking libgomp-14.2.0-h77fa898_1
Linking _openmp_mutex-4.5-2_gnu
Linking libgcc-14.2.0-h77fa898_1
Linking libzlib-1.3.1-hb9d3cd8_2
Linking libgcc-ng-14.2.0-h69a702a_1
Linking openssl-3.3.2-hb9d3cd8_0
Linking libexpat-2.6.3-h5888daf_0
Linking libsqlite-3.47.0-hadc24fc_0
Linking libffi-3.4.2-h7f98852_5
Linking tk-8.6.13-noxft_h4845f30_101
Linking libxcrypt-4.4.36-hd590300_1
Linking bzip2-1.0.8-h4bc722e_7
Linking ncurses-6.5-he02047a_1
Linking xz-5.2.6-h166bdaf_0
Linking libuuid-2.38.1-h0b41bf4_0
Linking libnsl-2.0.1-hd590300_0
Linking readline-8.2-h8228510_1
Linking tzdata-2024b-hc8b5060_0
Linking python-3.11.10-hc5c86c4_3_cpython
Linking pip-24.2-pyh8b19718_1
Linking setuptools-75.1.0-pyhd8ed1ab_0
Linking wheel-0.44.0-pyhd8ed1ab_0
Transaction finished
To activate this environment, use:
mamba activate auto-mrhoiku7s7v7
Or to execute a single command in this environment, use:
mamba run -n auto-mrhoiku7s7v7 mycommand
Installing pip packages
Collecting absl-py==1.4.0
Using cached absl_py-1.4.0-py3-none-any.whl.metadata (2.3 kB)
Collecting appdirs==1.4.4
Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting cachetools==5.3.1
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Collecting certifi==2023.5.7
Using cached certifi-2023.5.7-py3-none-any.whl.metadata (2.2 kB)
Collecting charset-normalizer==3.1.0
Using cached charset_normalizer-3.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (30 kB)
Collecting click==8.1.4
Using cached click-8.1.4-py3-none-any.whl.metadata (3.0 kB)
Collecting cmake==3.26.4
Using cached cmake-3.26.4-py2.py3-none-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.7 kB)
Collecting contourpy==1.1.0
Using cached contourpy-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.7 kB)
Collecting cycler==0.11.0
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Collecting debugpy==1.5.1
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Collecting decord==0.6.0
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Collecting docker-pycreds==0.4.0
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Collecting filelock==3.12.2
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Collecting fonttools==4.40.0
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Collecting gitdb==4.0.10
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Collecting gitpython==3.1.31
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Collecting google-auth-oauthlib==1.0.0
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Collecting grpcio==1.56.2
Using cached grpcio-1.56.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
Collecting idna==3.4
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Collecting imageio==2.31.5
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Collecting jinja2==3.1.2
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Collecting joblib==1.2.0
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Collecting jupyter-core==5.3.1
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Collecting kiwisolver==1.4.4
Using cached kiwisolver-1.4.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.3 kB)
Collecting kornia==0.6.12
Using cached kornia-0.6.12-py2.py3-none-any.whl.metadata (12 kB)
Collecting lazy-loader==0.3
Using cached lazy_loader-0.3-py3-none-any.whl.metadata (4.3 kB)
Collecting lit==16.0.6
Using cached lit-16.0.6-py3-none-any.whl
Collecting lzstring
Using cached lzstring-1.0.4-py2.py3-none-any.whl
Collecting markdown==3.4.3
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Collecting markupsafe==2.1.3
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Collecting matplotlib==3.7.1
Using cached matplotlib-3.7.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB)
Collecting mpmath==1.3.0
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Collecting natsort==8.4.0
Using cached natsort-8.4.0-py3-none-any.whl.metadata (21 kB)
Collecting networkx==3.1
Using cached networkx-3.1-py3-none-any.whl.metadata (5.3 kB)
Collecting numpy==1.25.0
Using cached numpy-1.25.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB)
Collecting nvidia-cublas-cu11==11.10.3.66
Using cached nvidia_cublas_cu11-11.10.3.66-py3-none-manylinux1_x86_64.whl.metadata (1.6 kB)
Collecting nvidia-cuda-cupti-cu11==11.7.101
Using cached nvidia_cuda_cupti_cu11-11.7.101-py3-none-manylinux1_x86_64.whl.metadata (1.6 kB)
Collecting nvidia-cuda-nvrtc-cu11==11.7.99
Using cached nvidia_cuda_nvrtc_cu11-11.7.99-2-py3-none-manylinux1_x86_64.whl.metadata (1.5 kB)
Collecting nvidia-cuda-runtime-cu11==11.7.99
Using cached nvidia_cuda_runtime_cu11-11.7.99-py3-none-manylinux1_x86_64.whl.metadata (1.6 kB)
Collecting nvidia-cudnn-cu11==8.5.0.96
Using cached nvidia_cudnn_cu11-8.5.0.96-2-py3-none-manylinux1_x86_64.whl.metadata (1.6 kB)
Collecting nvidia-cufft-cu11==10.9.0.58
Using cached nvidia_cufft_cu11-10.9.0.58-py3-none-manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting nvidia-curand-cu11==10.2.10.91
Using cached nvidia_curand_cu11-10.2.10.91-py3-none-manylinux1_x86_64.whl.metadata (1.6 kB)
Collecting nvidia-cusolver-cu11==11.4.0.1
Using cached nvidia_cusolver_cu11-11.4.0.1-2-py3-none-manylinux1_x86_64.whl.metadata (1.6 kB)
Collecting nvidia-cusparse-cu11==11.7.4.91
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Collecting nvidia-nccl-cu11==2.14.3
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Collecting nvidia-nvtx-cu11==11.7.91
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Collecting oauthlib==3.2.2
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Collecting opencv-python==4.7.0.72
Using cached opencv_python-4.7.0.72-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB)
Collecting pandas==2.0.3
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Collecting pathtools==0.1.2
Using cached pathtools-0.1.2-py3-none-any.whl
Collecting pillow==9.5.0
Using cached Pillow-9.5.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.5 kB)
Collecting pip==23.1.2
Using cached pip-23.1.2-py3-none-any.whl.metadata (4.1 kB)
Collecting protobuf==4.23.4
Using cached protobuf-4.23.4-cp37-abi3-manylinux2014_x86_64.whl.metadata (540 bytes)
Collecting psutil==5.9.0
Using cached psutil-5.9.0-cp311-cp311-linux_x86_64.whl
Collecting pyasn1-modules==0.3.0
Using cached pyasn1_modules-0.3.0-py2.py3-none-any.whl.metadata (3.6 kB)
Collecting pyasn1==0.5.0
Using cached pyasn1-0.5.0-py2.py3-none-any.whl.metadata (8.5 kB)
Collecting pycocotools==2.0.6
Using cached pycocotools-2.0.6-cp311-cp311-linux_x86_64.whl
Collecting pyparsing==3.1.0
Using cached pyparsing-3.1.0-py3-none-any.whl.metadata (4.9 kB)
Collecting pytz==2023.3
Using cached pytz-2023.3-py2.py3-none-any.whl.metadata (22 kB)
Collecting pyyaml==6.0
Using cached PyYAML-6.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting pyzmq==25.1.0
Using cached pyzmq-25.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (4.8 kB)
Collecting requests-oauthlib==1.3.1
Using cached requests_oauthlib-1.3.1-py2.py3-none-any.whl.metadata (10 kB)
Collecting requests==2.31.0
Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
Collecting rsa==4.9
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Collecting scikit-image==0.22.0
Using cached scikit_image-0.22.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (13 kB)
Collecting scikit-learn==1.2.2
Using cached scikit_learn-1.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB)
Collecting scipy==1.11.0
Using cached scipy-1.11.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (59 kB)
Collecting sentry-sdk==1.27.1
Using cached sentry_sdk-1.27.1-py2.py3-none-any.whl.metadata (8.8 kB)
Collecting setproctitle==1.3.2
Using cached setproctitle-1.3.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.8 kB)
Collecting setuptools==67.8.0
Using cached setuptools-67.8.0-py3-none-any.whl.metadata (6.2 kB)
Collecting smmap==5.0.0
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Collecting sympy==1.12
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Collecting tensorboard-data-server==0.7.1
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Collecting tensorboard==2.13.0
Using cached tensorboard-2.13.0-py3-none-any.whl.metadata (1.8 kB)
Collecting tensorboardx==2.6.1
Using cached tensorboardX-2.6.1-py2.py3-none-any.whl.metadata (5.6 kB)
Collecting threadpoolctl==3.1.0
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Collecting tifffile==2023.9.26
Using cached tifffile-2023.9.26-py3-none-any.whl.metadata (30 kB)
Collecting torch==2.0.1
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Collecting torchvision==0.15.2
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Collecting tornado==6.1
Using cached tornado-6.1-cp311-cp311-linux_x86_64.whl
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Using cached triton-2.0.0-1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (1.0 kB)
Collecting tzdata==2023.3
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Collecting urllib3==1.26.16
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Collecting wandb==0.15.5
Using cached wandb-0.15.5-py3-none-any.whl.metadata (8.2 kB)
Collecting werkzeug==2.3.6
Using cached Werkzeug-2.3.6-py3-none-any.whl.metadata (4.1 kB)
Collecting wheel==0.38.4
Using cached wheel-0.38.4-py3-none-any.whl.metadata (2.1 kB)
Collecting six>=1.4.0 (from docker-pycreds==0.4.0)
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Collecting platformdirs>=2.5 (from jupyter-core==5.3.1)
Using cached platformdirs-4.3.6-py3-none-any.whl.metadata (11 kB)
Collecting traitlets>=5.3 (from jupyter-core==5.3.1)
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Collecting packaging (from kornia==0.6.12)
Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
Collecting python-dateutil>=2.7 (from matplotlib==3.7.1)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting typing-extensions (from torch==2.0.1)
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Collecting future>=0.14.0 (from lzstring)
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
WARNING: The candidate selected for download or install is a yanked version: 'scipy' candidate (version 1.11.0 at https://files.pythonhosted.org/packages/27/10/985c0902929a424c8e0483f16ee54f92fc5e4fa07fbd83a36f3aa469b3fe/scipy-1.11.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scipy/) (requires-python:<3.13,>=3.9))
Reason for being yanked: License Violation
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Installing collected packages: pytz, pathtools, mpmath, lit, cmake, appdirs, wheel, urllib3, tzdata, typing-extensions, traitlets, tqdm, tornado, threadpoolctl, tensorboard-data-server, sympy, smmap, six, setuptools, setproctitle, pyzmq, pyyaml, pyparsing, pyasn1, psutil, protobuf, platformdirs, pip, pillow, packaging, oauthlib, nvidia-nccl-cu11, nvidia-cufft-cu11, nvidia-cuda-nvrtc-cu11, numpy, networkx, natsort, markupsafe, markdown, lazy-loader, kiwisolver, joblib, idna, grpcio, future, fonttools, filelock, debugpy, cycler, click, charset-normalizer, certifi, cachetools, absl-py, werkzeug, tifffile, tensorboardx, sentry-sdk, scipy, rsa, requests, python-dateutil, pyasn1-modules, opencv-python, nvidia-nvtx-cu11, nvidia-cusparse-cu11, nvidia-curand-cu11, nvidia-cuda-runtime-cu11, nvidia-cuda-cupti-cu11, nvidia-cublas-cu11, lzstring, jupyter-core, jinja2, imageio, gitdb, docker-pycreds, decord, contourpy, scikit-learn, scikit-image, requests-oauthlib, pandas, nvidia-cusolver-cu11, nvidia-cudnn-cu11, matplotlib, google-auth, gitpython, wandb, pycocotools, google-auth-oauthlib, tensorboard, triton, torch, torchvision, kornia
Attempting uninstall: wheel
Found existing installation: wheel 0.44.0
Uninstalling wheel-0.44.0:
Successfully uninstalled wheel-0.44.0
Attempting uninstall: setuptools
Found existing installation: setuptools 75.1.0
Uninstalling setuptools-75.1.0:
Successfully uninstalled setuptools-75.1.0
Attempting uninstall: pip
Found existing installation: pip 24.2
Uninstalling pip-24.2:
Successfully uninstalled pip-24.2
Successfully installed absl-py-1.4.0 appdirs-1.4.4 cachetools-5.3.1 certifi-2023.5.7 charset-normalizer-3.1.0 click-8.1.4 cmake-3.26.4 contourpy-1.1.0 cycler-0.11.0 debugpy-1.5.1 decord-0.6.0 docker-pycreds-0.4.0 filelock-3.12.2 fonttools-4.40.0 future-1.0.0 gitdb-4.0.10 gitpython-3.1.31 google-auth-2.22.0 google-auth-oauthlib-1.0.0 grpcio-1.56.2 idna-3.4 imageio-2.31.5 jinja2-3.1.2 joblib-1.2.0 jupyter-core-5.3.1 kiwisolver-1.4.4 kornia-0.6.12 lazy-loader-0.3 lit-16.0.6 lzstring-1.0.4 markdown-3.4.3 markupsafe-2.1.3 matplotlib-3.7.1 mpmath-1.3.0 natsort-8.4.0 networkx-3.1 numpy-1.25.0 nvidia-cublas-cu11-11.10.3.66 nvidia-cuda-cupti-cu11-11.7.101 nvidia-cuda-nvrtc-cu11-11.7.99 nvidia-cuda-runtime-cu11-11.7.99 nvidia-cudnn-cu11-8.5.0.96 nvidia-cufft-cu11-10.9.0.58 nvidia-curand-cu11-10.2.10.91 nvidia-cusolver-cu11-11.4.0.1 nvidia-cusparse-cu11-11.7.4.91 nvidia-nccl-cu11-2.14.3 nvidia-nvtx-cu11-11.7.91 oauthlib-3.2.2 opencv-python-4.7.0.72 packaging-24.1 pandas-2.0.3 pathtools-0.1.2 pillow-9.5.0 pip-23.1.2 platformdirs-4.3.6 protobuf-4.23.4 psutil-5.9.0 pyasn1-0.5.0 pyasn1-modules-0.3.0 pycocotools-2.0.6 pyparsing-3.1.0 python-dateutil-2.9.0.post0 pytz-2023.3 pyyaml-6.0 pyzmq-25.1.0 requests-2.31.0 requests-oauthlib-1.3.1 rsa-4.9 scikit-image-0.22.0 scikit-learn-1.2.2 scipy-1.11.0 sentry-sdk-1.27.1 setproctitle-1.3.2 setuptools-67.8.0 six-1.16.0 smmap-5.0.0 sympy-1.12 tensorboard-2.13.0 tensorboard-data-server-0.7.1 tensorboardx-2.6.1 threadpoolctl-3.1.0 tifffile-2023.9.26 torch-2.0.1 torchvision-0.15.2 tornado-6.1 tqdm-4.65.0 traitlets-5.14.3 triton-2.0.0 typing-extensions-4.12.2 tzdata-2023.3 urllib3-1.26.16 wandb-0.15.5 werkzeug-2.3.6 wheel-0.38.4
[notice] A new release of pip is available: 23.1.2 -> 24.3.1
[notice] To update, run: pip install --upgrade pip
/scratch/yuqian_fu/micromamba/envs/auto-mrhoiku7s7v7/lib/python3.11/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/scratch/yuqian_fu/micromamba/envs/auto-mrhoiku7s7v7/lib/python3.11/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
TOTAL TAKES: 101
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