This website contains complementary data to the Master Dissertation.
Design problems are characterized by violations of design principles affecting a software system. Because they often hinder the software maintenance, developers should identify and eliminate design problems whenever possible. Nevertheless, identifying design problems is far from trivial. Due to outdated and scarce design documentation, developers not rarely have to analyze the source code for identifying these problems. Past studies suggest that code smells are useful hints of design problems. However, recent studies show that a single code smell might not suffice to reveal a design problem. That is, around 80% of design problems are realized by multiple code smells, which interrelate in the so-called smell agglomerations. Thus, developers can explore each smell agglomeration to identify a design problem in the source code. However, certain smell agglomerations are formed by several code smells, which makes it hard reasoning about the existence of a design problem. Visualization approaches have been proposed to represent smell agglomerations and guide developers in identifying design problems. However, those approaches provide a very limited support to the identification of specific design problems, especially the ones affecting multiple design elements. This dissertation aims to address this limitation by proposing a novel approach for the visualization of smell agglomerations. We rely on evidence collected from multiple empirical studies to design our approach. We evaluate our approach with developers from both academy and industry. Our results suggest that various developers could use our visualization approach to accurately identify design problems, in particular those affecting multiple program elements. Our results also point out to different ways for improving our visualization approach based on the developers' perceptions.
In this study, we intended to assess our first visualization approach: a graph-based visualization, for the purpose of evaluating its accuracy and effectiveness in supporting developers on the identification of design problems. The context comprises professional developers reviewing source code of software projects developed by themselves.
We selected two Brazilian software companies (CO1 and CO2). Table I shows the details about the two software systems. After selecting the companies, we selected 10 developers, 6 from CO1 and 4 from CO2. To obtain a profile of each developer, we applied a questionnaire(You can find the questionnaires in our Download section.) regarding their knowledge of software development concepts, Java programming language, code smell, and design problems. Below we present the description of both companies and on Table II the details about the developers profiles, where we divided them by the pairs that they formed to perform the task and by which company they belong.
| Company | Language | Files | Blank | Comment | Code |
|---|---|---|---|---|---|
| CO1 | Java | 994 | 20211 | 2596 | 71327 |
| JavaServer Faces | 247 | 3904 | 26 | 21657 | |
| Javascript | 12 | 416 | 873 | 3793 | |
| HTML | 9 | 12 | 0 | 3731 | |
| XML | 237 | 875 | 242 | 3207 | |
| Maven | 5 | 195 | 66 | 2949 | |
| CSS | 6 | 95 | 200 | 771 | |
| DTD | 1 | 48 | 50 | 129 | |
| Visualforce component | 1 | 0 | 0 | 24 | |
| SUM | 1516 | 25785 | 4060 | 1083381 | |
| CO2 | Java | 141 | 3467 | 1231 | 11729 |
| Javascript | 70 | 1067 | 378 | 660 | |
| CSS | 27 | 749 | 110 | 5166 | |
| JSON | 16 | 7 | 0 | 3360 | |
| Maven | 1 | 16 | 3 | 317 | |
| YAML | 2 | 12 | 0 | 93 | |
| XML | 2 | 2 | 0 | 26 | |
| SQL | 1 | 3 | 2 | 14 | |
| Bourne Shell | 1 | 0 | 0 | 6 | |
| SUM | 323 | 5703 | 1940 | 33661 |
| Company | ID | Education | Experience in Industry (Years) | Experience with Java (Years) | Number of Projects working with Java (Industry) | Perform Code Review? | Familiar with the term Code Smells? | Familiar with the term Design Problem? |
|---|---|---|---|---|---|---|---|---|
| CO1 | D1 | Undergraduate | 3 | 3 | 2 | No | No | No |
| D2 | Graduate | 5 | 10 | 5 | No | No | Yes | |
| D3 | Specialization | 13 | 13 | - | Yes | No | Yes | |
| D4 | Master | 14 | 12 | 50+ | Yes | Yes | Yes | |
| D5 | Graduate | 14 | 12 | 7 | Yes | No | Yes | |
| D6 | Master | 6 | 6 | 10 | No | Yes | Yes | |
| CO2 | D7 | Graduate | 7 | 6 | 8 | Yes | Yes | Yes |
| D8 | Undergraduate | 2 | 0 | 0 | Yes | Yes | Yes | |
| D9 | Undergraduate | 4 | 5 | 3 | No | Yes | No | |
| D10 | Undergraduate | 4 | 4 | 4 | No | Yes | Yes |
We conducted a controlled experiment aimed at investigating the accuracy of the two visualization approaches (an enhanced Graph-based and VISADEP) for identifying design problems. The first approach is a new visualization called VISADEP. The second approach is a conventional visualization that uses graphs for representing agglomerations.
| Study | Artifacts |
|---|---|
| First Study (Graph-based) |
Subject Characterization |
Companies Characterization
Data AnalysisQuantitative Analysis | Qualitative Analysis based on video transcription |
| Second Study (VISADEP & Enhanced Graph-based) |
Subject Characterization |
Participant Profiles |
Cross Design
Training ArtifactsBasic Concepts Training | VISADEP Training | Graph-based Training Concept DefinitionsGraph-based ExperimentGraph-based Form Experiment Pushpull | Graph-based Form Experiment Workflow | Graph-based Post ExperimentVISADEP ExperimentVISADEP Form Experiment Pushpull | VISADEP Form Experiment Workflow | VISADEP Post ExperimentData AnalysisVISADEP Precision and Recall | Graph-based Precision and Recall | VISADEP Precision and Recall per Design Problem | Graph-based Precision and Recall per Design ProblemSystemsPuspull system description | Workflow system description |ToolVISADEP tool |


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Rivr is a lightweight open-source dialogue engine enabling Java developers to easily create enterprise-grade
VoiceXML applications.
Additionnal ressources:
Rivr is split into two modules:
- Core
- Base engine allowing HTTP requests to interact with a dialogue.
- VoiceXML
- VoiceXML driver for generating W3C VoiceXML 2.1-compliant dialogues. This is the place you look when coding
VoiceXML dialogues with Rivr.


{$extend "/8bit-era" $}
{$define "#content" }
Mario took up running in 1985. And swimming, and even a bit of Jack and the Beanstalk vine-climbing too. He became a veritable athlete in comparison to his earlier, stodgier self – and by necessity, because there was a princess to be saved.
Super Mario Bros. exponentially expanded Mario's world, as now his adventures were no longer adequately contained within the confines of a single screen. He had to run to the right to scroll his way into seeing the rest of the landscape in front of him; an act which quickly became a staple of video games as a whole. All of this was in the name of, hopefully, saving the kidnapped princess from the evil Koopa King.
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Akan names are derived from Ghanian culture. Frequently in Ghana, children are given their first name as a 'day name' which corresponds to the day in the week they were born. Here are Ghanian day names. This web application to show you your 'Akan' name when you submit your date of birth


| Processing Task |
|---|
| Estimation Cost of Laptop |
| Estimation Cost of Car |
| Estimation Cost of Airoplane |
| Estimation Cost of Jewellery |
| Estimation Cost of Tyers |
| UP Coming Task |
|---|
| Estimation Cost of Laptop |
| Estimation Cost of Car |
| Estimation Cost of Airoplane |
| Estimation Cost of Jewellery |
| Estimation Cost of Tyers |
| Product Name | Estimation Cost |
|---|---|
| Laptop 4 | 40000 |
| Car | 50000 |
| Airoplane | 4000000 |
| Jewellery | 20000 |
| Tyers | 4000 |


|
PX4 Firmware
PX4 Autopilot Software http://px4.io
|
Driver for the Bosch BMA 180 MEMS accelerometer connected via SPI. More...
#include <px4_config.h>
#include <px4_defines.h>
#include <ecl/geo/geo.h>
#include <sys/types.h>
#include <stdint.h>
#include <stdbool.h>
#include <stddef.h>
#include <stdlib.h>
#include <semaphore.h>
#include <string.h>
#include <fcntl.h>
#include <poll.h>
#include <errno.h>
#include <stdio.h>
#include <math.h>
#include <unistd.h>
#include <perf/perf_counter.h>
#include <systemlib/err.h>
#include <nuttx/arch.h>
#include <nuttx/wqueue.h>
#include <nuttx/clock.h>
#include <drivers/drv_hrt.h>
#include <board_config.h>
#include <drivers/device/spi.h>
#include <drivers/drv_accel.h>
#include <drivers/device/ringbuffer.h>
Go to the source code of this file.
Classes | |
| class | BMA180 |
Namespaces | |
| bma180 | |
| Local functions in support of the shell command. | |
Macros | |
| #define | ACCEL_DEVICE_PATH "/dev/bma180" |
| #define | DIR_READ (1<<7) |
| #define | DIR_WRITE (0<<7) |
| #define | ADDR_CHIP_ID 0x00 |
| #define | CHIP_ID 0x03 |
| #define | ADDR_ACC_X_LSB 0x02 |
| #define | ADDR_ACC_Y_LSB 0x04 |
| #define | ADDR_ACC_Z_LSB 0x06 |
| #define | ADDR_TEMPERATURE 0x08 |
| #define | ADDR_CTRL_REG0 0x0D |
| #define | REG0_WRITE_ENABLE 0x10 |
| #define | ADDR_RESET 0x10 |
| #define | SOFT_RESET 0xB6 |
| #define | ADDR_BW_TCS 0x20 |
| #define | BW_TCS_BW_MASK (0xf<<4) |
| #define | BW_TCS_BW_10HZ (0<<4) |
| #define | BW_TCS_BW_20HZ (1<<4) |
| #define | BW_TCS_BW_40HZ (2<<4) |
| #define | BW_TCS_BW_75HZ (3<<4) |
| #define | BW_TCS_BW_150HZ (4<<4) |
| #define | BW_TCS_BW_300HZ (5<<4) |
| #define | BW_TCS_BW_600HZ (6<<4) |
| #define | BW_TCS_BW_1200HZ (7<<4) |
| #define | ADDR_HIGH_DUR 0x27 |
| #define | HIGH_DUR_DIS_I2C (1<<0) |
| #define | ADDR_TCO_Z 0x30 |
| #define | TCO_Z_MODE_MASK 0x3 |
| #define | ADDR_GAIN_Y 0x33 |
| #define | GAIN_Y_SHADOW_DIS (1<<0) |
| #define | ADDR_OFFSET_LSB1 0x35 |
| #define | OFFSET_LSB1_RANGE_MASK (7<<1) |
| #define | OFFSET_LSB1_RANGE_1G (0<<1) |
| #define | OFFSET_LSB1_RANGE_2G (2<<1) |
| #define | OFFSET_LSB1_RANGE_3G (3<<1) |
| #define | OFFSET_LSB1_RANGE_4G (4<<1) |
| #define | OFFSET_LSB1_RANGE_8G (5<<1) |
| #define | OFFSET_LSB1_RANGE_16G (6<<1) |
| #define | ADDR_OFFSET_T 0x37 |
| #define | OFFSET_T_READOUT_12BIT (1<<0) |
Functions | |
| __EXPORT int | bma180_main (int argc, char *argv[]) |
| void | bma180::start () |
| Start the driver. More... | |
| void | bma180::test () |
| Perform some basic functional tests on the driver; make sure we can collect data from the sensor in polled and automatic modes. More... | |
| void | bma180::reset () |
| Reset the driver. More... | |
| void | bma180::info () |
| Print a little info about the driver. More... | |
Variables | |
| BMA180 * | bma180::g_dev |
Driver for the Bosch BMA 180 MEMS accelerometer connected via SPI.
Definition in file bma180.cpp.
| #define ACCEL_DEVICE_PATH "/dev/bma180" |
Definition at line 70 of file bma180.cpp.
Referenced by BMA180::init(), bma180::reset(), bma180::start(), and bma180::test().
| #define ADDR_ACC_X_LSB 0x02 |
Definition at line 79 of file bma180.cpp.
Referenced by BMA180::measure().
| #define ADDR_ACC_Y_LSB 0x04 |
Definition at line 80 of file bma180.cpp.
| #define ADDR_ACC_Z_LSB 0x06 |
Definition at line 81 of file bma180.cpp.
| #define ADDR_BW_TCS 0x20 |
Definition at line 90 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define ADDR_CHIP_ID 0x00 |
Definition at line 76 of file bma180.cpp.
Referenced by BMA180::init(), and BMA180::probe().
| #define ADDR_CTRL_REG0 0x0D |
Definition at line 84 of file bma180.cpp.
Referenced by BMA180::init(), BMA180::set_lowpass(), and BMA180::set_range().
| #define ADDR_GAIN_Y 0x33 |
Definition at line 107 of file bma180.cpp.
Referenced by BMA180::init().
| #define ADDR_HIGH_DUR 0x27 |
Definition at line 101 of file bma180.cpp.
Referenced by BMA180::init().
| #define ADDR_OFFSET_LSB1 0x35 |
Definition at line 110 of file bma180.cpp.
Referenced by BMA180::set_range().
| #define ADDR_OFFSET_T 0x37 |
Definition at line 119 of file bma180.cpp.
Referenced by BMA180::init().
| #define ADDR_RESET 0x10 |
Definition at line 87 of file bma180.cpp.
Referenced by BMA180::init().
| #define ADDR_TCO_Z 0x30 |
Definition at line 104 of file bma180.cpp.
Referenced by BMA180::init().
| #define ADDR_TEMPERATURE 0x08 |
Definition at line 82 of file bma180.cpp.
| #define BW_TCS_BW_10HZ (0<<4) |
Definition at line 92 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define BW_TCS_BW_1200HZ (7<<4) |
Definition at line 99 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define BW_TCS_BW_150HZ (4<<4) |
Definition at line 96 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define BW_TCS_BW_20HZ (1<<4) |
Definition at line 93 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define BW_TCS_BW_300HZ (5<<4) |
Definition at line 97 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define BW_TCS_BW_40HZ (2<<4) |
Definition at line 94 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define BW_TCS_BW_600HZ (6<<4) |
Definition at line 98 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define BW_TCS_BW_75HZ (3<<4) |
Definition at line 95 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define BW_TCS_BW_MASK (0xf<<4) |
Definition at line 91 of file bma180.cpp.
Referenced by BMA180::set_lowpass().
| #define CHIP_ID 0x03 |
Definition at line 77 of file bma180.cpp.
Referenced by BMA180::init(), and BMA180::probe().
| #define DIR_READ (1<<7) |
Definition at line 73 of file bma180.cpp.
Referenced by BMA180::read_reg().
| #define DIR_WRITE (0<<7) |
Definition at line 74 of file bma180.cpp.
Referenced by BMA180::write_reg().
| #define GAIN_Y_SHADOW_DIS (1<<0) |
Definition at line 108 of file bma180.cpp.
Referenced by BMA180::init().
| #define HIGH_DUR_DIS_I2C (1<<0) |
Definition at line 102 of file bma180.cpp.
Referenced by BMA180::init().
| #define OFFSET_LSB1_RANGE_16G (6<<1) |
Definition at line 117 of file bma180.cpp.
Referenced by BMA180::set_range().
| #define OFFSET_LSB1_RANGE_1G (0<<1) |
Definition at line 112 of file bma180.cpp.
| #define OFFSET_LSB1_RANGE_2G (2<<1) |
Definition at line 113 of file bma180.cpp.
Referenced by BMA180::set_range().
| #define OFFSET_LSB1_RANGE_3G (3<<1) |
Definition at line 114 of file bma180.cpp.
Referenced by BMA180::set_range().
| #define OFFSET_LSB1_RANGE_4G (4<<1) |
Definition at line 115 of file bma180.cpp.
Referenced by BMA180::set_range().
| #define OFFSET_LSB1_RANGE_8G (5<<1) |
Definition at line 116 of file bma180.cpp.
Referenced by BMA180::set_range().
| #define OFFSET_LSB1_RANGE_MASK (7<<1) |
Definition at line 111 of file bma180.cpp.
Referenced by BMA180::set_range().
| #define OFFSET_T_READOUT_12BIT (1<<0) |
Definition at line 120 of file bma180.cpp.
Referenced by BMA180::init().
| #define REG0_WRITE_ENABLE 0x10 |
Definition at line 85 of file bma180.cpp.
Referenced by BMA180::init(), BMA180::set_lowpass(), and BMA180::set_range().
| #define SOFT_RESET 0xB6 |
Definition at line 88 of file bma180.cpp.
Referenced by BMA180::init().
| #define TCO_Z_MODE_MASK 0x3 |
Definition at line 105 of file bma180.cpp.
Referenced by BMA180::init().
| int bma180_main | ( | int | argc, |
| char * | argv[] | ||
| ) |
Definition at line 890 of file bma180.cpp.
References errx, bma180::info(), bma180::reset(), bma180::start(), and bma180::test().


Welcome to HELP, the Higher Education Learning Program! This project was created by Braden Ash, Ricardo Barraza, Jack Riley, and Noah Thomas for the University of Puget Sound’s Computer Science Capstone. The end goal of this project was to replace and update an online Biomechanics course created using a 1980s copy of Adobe Authorware. The current version of the system is up and running at helppugetsound.com, and can be tested by making a free account and enrolling in a demo class using the class code DEMO.
Note: this page is copied from the the github repo.
Due the the nature of the University of Puget Sound’s Occupational Therapy Program, students often found themselves needing review for a handful of introductory biomechanics topics. However, because each student needed to review a different topic, there was no way the instructor could refresh them on every topic.
Thus, the original Help! program was born. The instructor of this course created a multi-part review system covering all introductory topics essential to the students’ success in the program using Adobe Authorware. This multimedia study tool quizzed students on different biomechanical functions by asking them to watch certain clips of the Beatle’s movie Help! and analyze what was happening in their bodies.
This software was uploaded onto 8 Power Macintosh Computers. However, almost 30 year later, only one of these computers remains semi-functional.
In late Fall 2020, the instructor asked Computer Science students to develop a more modern and flexible version of this software, resulting in this project, the Higher Education Learning Program (HELP).
After taking all of the client’s needs into account, this project was developed with flexibility in mind - rather than content/helpally creating and populating a website, professors can dynamically create courses with chapters, sections, and questions. Each page can flexibility hold text, images, videos, and a quiz. Each quiz is populated with any combination of multiple choice, short answer, drag and drop, and point and click questions.
Users are immediately greeted with a dynamic home screen, highlighting some of the many use cases with this program. After entering the site, users are prompted to either create or login to an account. There are two account types: student and professor. Students can only enroll in classes, while professors can manage, create, and collaborate on these classes. This site is also equipped with password management, allowing users to reset their password via automated email.
| HELP Splash Screen | Login Page |
|---|---|
Professors and students are each welcomed to the app with a home screen, allowing them to view their list of classes, along with basic profile editing functionality. Every professor view is also populated with question mark blocks, showing tip popups explaining how to perform actions relevant to the content of the page. Professors can also access a full tutorial from the navbar at any time.
| Professor Home Page | Tip Popup Example |
|---|---|
Once a professor navigates to the class they want to edit, they are presented with the edit class page. Each class is made up of a set of chapters, which is made up of a set of sections. Each chapter and section must be published in order for students to be able to see that content. This allows professors to create content ahead of the time they want to roll it out to their students.
| Edit Class Page | Edit Chapter Page |
|---|---|
Professors can also edit sections. The section page is where the students will spend most of their time using the program, and as previously stated, holds a flexible amount of content. A section page is broken into 3 blocks: text, video, and quiz, in that order. Each section can hold an unlimited amount of content. A screenshot of the edit section page can be seen here, as the image is too long to be visible in this readme.
There are four different variations of question elements. These elements can be mixed and matched in a quiz element. When creating a new quiz element, professors are prompted with this popup window asking for basic question details.
After creating a question, professors can create the answers. Each question type can have multiple correct answers, and will not be visible if there are none. A screenshot of the edit question section page can be seen here, as the image is too long to be visible in this readme.
After populating a section, a professor can preview their work from a student’s point of view. This project allows for easy switching between professor and student views, ensuring that a professor’s published page will meet their expectations once it goes live. If a professor populated a page using the same data from the project screenshots, their section page preview would be populated like this:
As previously stated, there are four types of questions: Multiple Choice, Short Answer, Drag and Drop, and Point and Click. All of these are housed in the quiz box at the bottom of the section page. Once a student presses the start quiz button, the first question is presented. The student’s progess is automatically tracked throughout the quiz in a set of colored bubbles - grey = not taken, red = incorrect, orange = correct (second try or later), and green = correct (first try)
| Multiple Choice Question | Short Answer Question |
|---|---|
| Drag and Drop Question | Point and Click Question |
After submitting an answer to a question, the student is presented with a popup explaining why their answer was correct or incorrect. As this is a learning tool, it is important that students understand why their answer was marked the way it was, and are granted multiple tries to reach the right answer.
| Correct | Partially Correct | Incorrect |
|---|---|---|
Each class also has a custom glossary that allows students to look up words important to their course. This glossary is accessible from the navbar on any page, and professors can edit the glossary from the chapter homepage at any time.
| Glossary Creation | Published Glossary |
|---|---|
Flask - Python framework and boilerplate
SQLite - Database
Amazon Web Services - Web hosting
All creators worked together in all aspects of this project. However, each person had a few central focuses for this project.
Braden Ash - glossary, data translation and population, section page (text)
Ricardo Barraza - database manager, database integration, publishing and uploading, professor portal
Jack Riley - flask guru, account and form system, professor and student portal, web hosting, quiz development (drag and drop, point and click), tooltips
Noah Thomas - front end framework, section page (video, quiz) and professor integration, quiz development (multiple choice, short answer), tooltips, readme
David Chiu, our capstone professor
George Tomlin, our patient and optimistic client
University of Puget Sound Tech Services, ripping our copy of the film
Occupational Therapy and Math/CS Departments, for their continued support throughout this project’s development


Pattern languages in HCI: a critical review
Authors
A.M. Dearden and J. Finlay
Notes
Field of Study
Concepts
Quotations
References
Methodology


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A specialized lazy XML->SXML parser Is heavily based on continuations
A helper that forces all descendants of a given node or a nodeset
Returns the list containing of all members of the argument list except for the last member
Returns the common part of the seed
A monad-like handler Replaces the common part of the seed
Produces a lazy SXML document, which corresponds to reading a source document in a stream-wise fashion
A helper that forces all descendants of a given node or a nodeset
(define (lazy:force-descendants node) (cond ((lazy:promise? node) ; force it (lazy:force-descendants (force node))) ((pair? node) ; not null (for-each lazy:force-descendants node)) (else ; null or not pair #t ; nothing to be done )))
Returns the list containing of all members of the argument list except for the last member
(define (lazy:except-last lst) (if (or (null? lst) ; this shouldn't happen (null? (cdr lst))) '() (cons (car lst) (lazy:except-last (cdr lst)))))
Returns the common part of the seed
(define (lazy:seed-common seed) ((if (null? (cdr seed)) ; a short seed car caddr) seed))
A monad-like handler Replaces the common part of the seed
(define (lazy:replace-common seed new-common) (if (null? (cdr seed)) ; a short seed (list new-common) (list (car seed) (cadr seed) new-common (cadddr seed))))
Produces a lazy SXML document, which corresponds to reading a source document in a stream-wise fashion
(define (lazy:xml->sxml port namespace-prefix-assig) (let ((namespaces (map (lambda (el) (cons* #f (car el) (ssax:uri-string->symbol (cdr el)))) namespace-prefix-assig)) (RES-NAME->SXML (lambda (res-name) (string->symbol (string-append (symbol->string (car res-name)) ":" (symbol->string (cdr res-name))))))) ((lambda (result) ; We assume that nobody follows the document element (if (null? namespace-prefix-assig) (cons '*TOP* (lazy:except-last result)) (cons '*TOP* (cons `(@@ (*NAMESPACES* ,@(map (lambda (ns) (list (car ns) (cdr ns))) namespace-prefix-assig))) (lazy:except-last result))))) (call-with-current-continuation ; we grab the continuation to escape from parsing (lambda (result-k) ; seed ::= (list result-k state-k common-seed level) ; result-k - continuation on what to do with the current result portion ; state-k - continuation to return to SSAX state on this level of XML ; tree hierarchy ; common-seed - general seed information ; level - level of a current node in a tree hierarchy ((ssax:make-parser NEW-LEVEL-SEED (lambda (elem-gi attributes namespaces expected-content seed) ;(pp (cons elem-gi (cadddr seed))) (if (or (null? (cdr seed)) ; short seed (> (cadddr seed) 3)) ; deep level (list '()) ; work like a conventional SSAX parser (let ((attrs (attlist-fold (lambda (attr accum) (cons (list (if (symbol? (car attr)) (car attr) (RES-NAME->SXML (car attr))) (cdr attr)) accum)) '() attributes))) (call-with-current-continuation (lambda (new-level-k) ; how to parse next ((car seed) ; return the result (let ((elem-content ; A promise to continue parsing (call-with-current-continuation ; where to put the result (lambda (elem-k) (new-level-k (list ; now form a seed elem-k ; what to do with result new-level-k ; SSAX state on this level '() ; common-seed is empty (+ (cadddr seed) 1) ; increase level )))))) (append ; Previous string content (ssax:reverse-collect-str-drop-ws (caddr seed)) (list (cons (if (symbol? elem-gi) elem-gi (RES-NAME->SXML elem-gi)) (if (null? attrs) elem-content (cons (cons '@ attrs) elem-content))) ; The following siblings of this element (delay (call-with-current-continuation ; where to put the result (lambda (foll-k) ; First we force the parsing of the current element (lazy:force-descendants elem-content) ; Than continue parsing ((cadr seed) ; recover the parent level of nesting (list foll-k ; what to do with result (cadr seed) '() ; common-seed is empty (cadddr seed) ; the same level for siblings )))))))))))))) FINISH-ELEMENT (lambda (elem-gi attributes namespaces parent-seed seed) (if (null? (cdr seed)) ; a short seed (let ((common (ssax:reverse-collect-str-drop-ws (lazy:seed-common seed))) (attrs (attlist-fold (lambda (attr accum) (cons (list (if (symbol? (car attr)) (car attr) (RES-NAME->SXML (car attr))) (cdr attr)) accum)) '() attributes))) (lazy:replace-common parent-seed (cons (cons (if (symbol? elem-gi) elem-gi (RES-NAME->SXML elem-gi)) (if (null? attrs) common (cons (cons '@ attrs) common))) (lazy:seed-common parent-seed)))) ; Otherwise - just return the remaining character content ((car seed) ; continuation (ssax:reverse-collect-str-drop-ws (lazy:seed-common seed))))) CHAR-DATA-HANDLER (lambda (string1 string2 seed) ;(pp (list string1 string2 seed)) (lazy:replace-common seed (if (string-null? string2) (cons string1 (lazy:seed-common seed)) (cons* string2 string1 (lazy:seed-common seed))))) DOCTYPE (lambda (port docname systemid internal-subset? seed) (when internal-subset? (ssax:warn port "Internal DTD subset is not currently handled ") (ssax:skip-internal-dtd port)) (ssax:warn port "DOCTYPE DECL " docname " " systemid " found and skipped") (values #f '() namespaces seed)) UNDECL-ROOT (lambda (elem-gi seed) (values #f '() namespaces seed)) PI ((*DEFAULT* . (lambda (port pi-tag seed) (lazy:replace-common seed (cons (list '*PI* pi-tag (ssax:read-pi-body-as-string port)) (lazy:seed-common seed)))))) ) port (list ; form initial seed result-k ; put the result (lambda (seed) ; dummy top-level parser state that produces '() ((car seed) ; where to put the result nodeset '())) '() 1 ; level for the document element )))))))


AngularJS Movies
Add Movie
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{{ movie.year }}
{{ movie.description }}
Edit Movie
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Id: 90
Name: Daron Jefferson
Status: Alive
Species: Alien
Type: Cone-nippled alien
Gender: Male
OriginName: Unity's Planet
OriginUrl: https://rickandmortyapi.com/api/location/28
LocationName: Unity's Planet
LocationUrl: https://rickandmortyapi.com/api/location/28
Image: https://rickandmortyapi.com/api/character/avatar/90.jpeg
Episode: ['https://rickandmortyapi.com/api/episode/14']
Url: https://rickandmortyapi.com/api/character/90
Created: 2017-12-01T10:54:34.736Z


FEATURES
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This little exercise will take you through the basic git mechanisms you need to know about in order to be productive. By the end of this exercise you’ll be able to create and manage your own git repos
Note: you can do all of this stuff from the command line! You should be using linux. Open up a termanal and do the following:
git-basic-exercises
ls -a
. It should be emptygit init
. Then check ls -a
again. Can you spot the difference?git status
touch README.md
. This creates a new blank file. Then check ls -a
and git status
again.git log
. The output should make sense to yougit add
commandgit status
again.  This will open up a text editor. Type in some stuff and then press ctrl x
to exit. Then y
then enter
. This will save your changescat README.md
. This will print your file to the consolegit stats
again and make sure you understand it"second commit"
"third commit"
git log
. You should see all your commits there.   You can checkout a branch, a commit hash, or a tag. We didn’t explore tags here.
When you checkout a branch, you checkout the latest commit on that branch.
The real power of git is in branching. Branching is what allows big teams of developers to work on the same code base. Let’s explore branching a little bit.
git branch
This lists all your branches. Git makes a branch named master
by defaultmilkshake-flavours
. git is not too restrictive when it comes to naming our branches. It’s generally best to choose a name that has something to do with what the branch is for. Our branch is about milkshakesgit branch
. Notice the little *
.git branch
again and look at the *
. Can you see what it means? Try switching between the different branches and see how hings change.milkshake-flavours
branch then type in nano milkshakes.md
and write fill in a few flavours. Mmmm. save and exitgit status
tell you?"added initial flavours"
history
and check it out. If you say git log
it should only have three commitshistory > history.txt
. Can you guess what it does?"added history"
.  Let’s start with the milkshake branch
merge milkshake-flavours into master
git checkout master
git merge milkshake-flavours
Use ls
and git log
to see what this did
merge history into master
Use ls
and git log
to see what this did
As you can see a whole lot of changes have been made to the master branch
Now lets take a look at the other branches
git checkout history
git log
...
git checkout milkshake-flavours
git log
These branches were not effected by the merge!
In general if we want to merge branch X into branch Y:
git checkout Y
git merge X
This adds a commit to branch Y and doesn’t change branch X
history
. Use git log
to see whats up.Go to Github.com (using your browser of choice) and create a new public repository using the user interface. Name it git-basic-exercises
You will see a bunch of weird looking things. There is a section entitled “…or push an existing repository from the command line”. We have an existing repository and a command line. So this seems appropriate. Copy the commands from there and paste them into your terminal. this will push your changes to github.
Refresh your browser. Cool eh?
Now you should see a little dropdown box on github that says “Branch: master”. Click there. your other branches aren’t available.
git-basic-exercises
directory. Let’s get out of there. cd ../
git clone $THE_URL_YOU_JUST_COPIED
. It should look something like this: git clone https://github.com/Umuzi-org/tech-department
cd
into the tech-department directory that was just createdgit branch
and git log
git branch -a
. This shows the remote branchesproject/git-basic-exercises
on your local computer. You can do it, you’ll need to figure out howgit remote -v
We just covered the basics here. Please make sure you understand this stuff. It’s super important. Git might seem like a weird theoretical thing to a lot of you. It might seem completely unrelated to the actual job of writing code. But it’s not. Git makes teamwork on dev teams possible.  So learn it. Be comfortable with it. When we start working in teams later on all will be made clear.
If you are curious now, spend some time googling git branching stratergies. We use the feature branching stratergy here. We’ll cover it in depth later on in the course.


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Intro to server side languages
Overview
Practice several languages to interact with the system
Description
Using the information you have learned anser the questions below.
Instructions
- Use Python, Ruby, and Node lanuges to produce the following functionalities
- Create a grader
- Create a class "Grader"
- Create methods to output a valid grade
- Using the command line ask user a question for students name
- Using the command line ask user a question for assignment name
- Using the command line ask user a question for grade in numbers
- Return the letter grade for the assingment
Assign letter grades based on points earned. Using if/else/elseif statements, create a function that returns a letter grade based on the following point breakdowns when called:
100-90=A, 80-89=B, 79-70=C, 69-60=D, <60=F
To test your function, try it with these 5 point values and echo the result back out from the value returned from the function:
1. 94
2. 54
3. 89.9
4. 60.01
5. 102.1
Hint: Think about the order in which if/elseif/else evaluates your conditions. Do you test for an "A" condition first and work your way down, or test for "F" and work your way up?
-
Show errors in command line if there are any.
Rubric
| Python IO | 10.00% |
| Python Class Code | 10.00% |
| Python Comments/Output | 10.00% |
| Ruby IO | 10.00% |
| Ruby Class Code | 10.00% |
| Ruby Comments/Output | 10.00% |
| Node IO | 10.00% |
| Node Class Code | 10.00% |
| Node Comments/Output | 10.00% |
| Delivery 1 contains GIT & Video URL | 10.00% |
Deliverable
- You must submit a GIT repo and demo video for a credit.
- Submit a link to your assingment in your GIT repo.
- Submit a short/unlisted video link for your demo video in YouTube


Camera Demo App
(step 1) Upload a picture
(step 1) or, Use these samples
Input Image, Abs Pos (
)
Output Image, Abs Pos (
)
Ground Truth, Abs Pos (
)
(step 3) Buttons to load the image from same time stamp
Camera Name
Absolute Position
CameraRGB4
-1.3
CameraRGB2
-0.3
CameraRGB0
0.0
CameraRGB1
0.5
CameraRGB3
1.0
CameraRGB5
2.0
(step 2) tip: use arrow keys
Shift By
0


Fees (basic): {{student.fees | currency}}
Fees (with optional symbol): {{student.fees | currency : '€'}}
Fees (with optional symbol and fractionSize): {{student.fees | currency : "USD$" : 0}}


OmegA
Geopoliticus Child Watching the Birth of a New Man
Oh nothing, just the end of this world...
GLOBAL HUMAN POPULATION
"The bottom line for our species is that because of population growth and the fivefold economic expansion since 1950, the environmental demands of our economic system now fill the available environmental space of the planet. This has brought us to a historic transitional point in the evolutionary development of our species from living in a world of open frontiers to living in a full worldin a mere historical instant. We now have the option of adjusting ourselves to this new reality or destroying our ecological niche and suffering the consequences.
Our problem results from acting like cowboys on a limitless frontier when in truth we inhabit a living spaceship with a finely balanced life-support system."David C. Korton
"This is not a dress rehearsal for the apocalypse. This is not a pseudo-millenium. This is the real thing folks. This is not a test. This is the last chance before things become so dissipated that there is no chance for cohesiveness."Terence McKenna |
| ||||||
| Hopi elders speak of prior human epochs when man rose to great technological heights only to destroy himself. They believe it will happen again unless humans change. Variations on the theme of Noah's Flood run through the legends of nearly all ancient peoples. Equally common as the deluge myth is this additional forewarning: The next global house-cleaning will be by fire.John Hogue | |||||||
|
Pre-Colombian Hopi Prophecies from The Millennium Book of Prophecy by John Hogue:
"Before the time of the great Purification, they will make metal roads for iron horses and hang metal ropes in the air." "First they will bring back pieces of the Moon which will upset the balance and unleash disastrous forces." "Near the day of the Great Purification, there will be cobwebs spun back and forth in the sky." "The Purification will begin shortly after humans build a great house in the sky. By then there will be fires everywhere and greedy, selfish, power-mad leaders, internal wars."
|
We are at far more of a "turning point" than even the one Capra envisions; in possession of far more of a "web of reinforcement" than Baines could hope for; the morphogenetic-field potential is far higher than Sheldrake predicts; the groundswell documented by Ferguson is about to become a tsunami, with a capability to take the planet off hold and close the "vision gap" in a way that is perhaps more comprehensive than conceived by Barbara Marx Hubbard.Neil Freer
It ain't over 'til it's over.Yogi Berra
- Selections from The Akashic Record Player by Antero Alli wherein the Planetary Entity narrates Herstory about how She arranges meetings between uncertain humans at certain sites to perform Earth Rites for future myths.
- In The Critical Mass of Enlightenment examines how many enlightened people are needed to detonate mass liberation.
- The Book of Last Chances collects quotes about the human condition and it's future.
- Social Insects have been running successful urban civilizations for 100 million years.
- The Future of Mankind by Ven. Abbot Hsuan Hua
THE POLITICS OF EXTINCTION
WORLD SCIENTIST'S WARNING TO HUMANITY
- Immanentization Technology
- Stars and placental amniotes! And ye inhabitants of the ten thousand worlds! ...the ultimate Yoga which gives emancipation, which destroys the sense of separateness which is the root of Desire, is to be made by the concentration of every element of one's being, and annihilating it by intimate combustion with the universe itself.Aleister Crowley's Eight Lectures On Yoga: Yoga For Yahoos & Yoga For Yellowbellies
- The Clear White Light : When man allows his external thinking and action to settle into uncreative static conditions, pressures build up, and the undisciplined subconscious releases itself to anger, an emotion which renders a man blind to the existence of inner light in any degree.
T E C H N O S U R R E A L I S M
March 20, 1998 Dec 21, 2012
You can see 4 technologies that I call the GRIN technologies: Genetics, Robotics, Information technology and Nanotechnology, and all of them are following a curve of exponential change. You're seeing a curve that goes straight up...and you've never seen a curve of change like that in all of human history.RadicalEvolution
- Remotes
- Seven Bodies, Seven Chakras by Osho
- Meditation: The Way of Attainment of Genius or Godhead Considered as a Development of the Human Brain by Aleister Crowley
- Mind is a MythDisquieting conversations with the man called U.G.
- Vedic Cosmology & The Emerging Cosmos
- The Prophecy of Hermes Trismegistus
- What is Scenario Planning?
The final march of doom has begun. The earth is prepared for the ultimate devastation. The mighty engines of WAR are all aligned and brought together for the End. The scene is set. The Lord LUCIFER has sown the seeds of WAR, and now weeps to see them take root and flourish in the fertile ground of man's destructive nature. The Lord JEHOVAH decrees the End and the violence of the End. He prophesies the harvest of monumental slaughter. And I, the Lord SATAN, with My army of the damned, am come to reap that harvest, and to feed My furnace with the souls of the fearful.SATAN
- THE PROCESSChurch of the Final Judgement
- Dark Night of the Soul by St. John of the Cross
- The Second Coming by William Butler Yeats
- Actual Photographs of THE BATTLE OF ARMAGEDDON
- What doom we do not deliberately perpetrate upon ourselves will be visited up on us by our selfish UNWILLINGNESS to do what we KNOW can be done to save us from imminent disaster.Vomitus Maximus
The end of time is just another way of saying the beginning of immortality.
Genesis P-Orridge
Eschatological Magus Terence McKenna
Change more radical by magnitudes than anything that has gone before
looms immediately ahead.Terence McKenna
- H Y P E R B O R E A
- Behold The Final Illusion!
- The Eschaton: The Last Thing
- Novelty & Concrescence attempts to map the endtime with mathematical precision.
- The Millennial Meme Nest
- Local
- Esalen Institute's Sustainability Consciousness Conference.
- DAY ONE: The End of the World? transcript and RealAudio
Man has lived a long time the way he has lived [violently and unconsciously]. By the end of this century, a critical quantum leap is possible. Either man will die in a third world war or man will take a jump and will become a new man. Before that happens, a great Buddhafield is neededa field where we can create the future.Osho
When a seed
or an animal
or a man is ripe,
it must mature
to its next phase.
Or rot.Stewart Edward White
~:=|| ||=:~
Places to go, people to see
- Omega Nebula
- The Omega Female!
- Alignment 2012 with John Major Jenkins
- Planetary Pilgrims José & Lloydine Argüelles
- Ander's Omega Point and Singularity pages.
More than any time in history mankind faces a crossroads. One path leads to despair and utter hopelessness, the other to total extinction. Let us pray that we have the wisdom to choose correctly.Woody Allen


- Support additional information for metadata inside constructor property promotion (Daniel Espendiller)
- Add PromotedField support for column names completion (Daniel Espendiller)
- Support Doctrine column name completion for attributes (Daniel Espendiller)
- Fix #259 Incorrect Doctrine deprecation flagged on OpenApi attributes (Daniel Espendiller)
- targetEntity for Doctrine relations should be resolved to support same namespace (Daniel Espendiller)


Component configuration interfaces and XML-based implementations.
The org.apache.avalon.framework.configuration
package contains primarily:
- The Configurable interface, which a Component implements
if it needs to be configured with externally-specified data before it is initialized.
- The Configuration interface, an implementation of which
will be passed to Components that implement Configurable.
- The Reconfigurable interface, which Components implement if
they need to be reconfigured at runtime.
- Various classes providing the default XML-based implementation of Configuration. The mapping from XML to Configuration tree is
described in DefaultConfigurationBuilder.


In this post we show how to migrate off of any RDBMS, onto any other RDBMS. We use a case study of Oracle -> MySQL, but we can move between any 2 combinations (SQL Server -> Postgres, MySQL -> SQLite…etc.)
TL;DR? Jump to code snippet solution.
The New England Patriots Case Study
With NEP, I was responsible for projects spanning various fields, ranging from Web Development to Machine Learning. After learning that we kept the majority of our data in an Oracle 9i RDBMS, and learning that Oracle pulled support for the system in July 2010, naturally the first move to make was to migrate onto a different RDBMS, or to upgrade.
In short, we chose to migrate from Oracle onto MySQL as our target RDBMS. So began my journey to migrate off of a very outdated database, and onto a modern solution.
The Project Requirements
As most projects do, the project grew from a simple database migration, to a database migration requiring cleaning data, altering schema, identifying and dropping unused/legacy columns etc… We identified the following requirements when searching for a solution:
- No Loss of Information
- Data, schema, constraints and indexes all must be migrated without any loss of information.
- Automated Solution
- Avoid .sql scripts and manual scripting.
- ‘Push-button’ solution, rather than several small procedures.
- High Degree of Customizability.
- Adding custom rules for schema transformations.
- Adding custom rules for data transformations.
- Performance
- Fast enough to test multiple runs per day.
The Immediate Solutions Failed…
- MySQL Workbench involved a great deal of manual configuring, and no ‘automated’ way to migrate from Oracle -> MySQL.
- (Why would Oracle allow Enterprise -> Open-source migrations within their own product-line anyway?)
- DBConvert lacked support for Oracle versions before 10.x.x.
- (Pricing also starts at $150 for Personal use, $1000 for Enterprise use)
- A few Ruby gems (taps) lacked support for many of the Oracle column types, and the cx_Oracle driver in general.
The Solution
I decided to dust off an old college project, burn the midnight oil to revitalize it, and leverage it to solve this problem.
The project, etlalchemy, is an open-sourced Python application which sits atop SQLAlchemy, and allows ETL (Extract, Transform, Load) functionality between any 2 SQL databases. The tool presents a “Simple over Complex” solution to the problem, allowing you to Migrate any SQL Database with 4 Lines of Code. (More advanced features are also available).
To install the tool:
pip install etlalchemy
# On El Capitan:
### pip install --ignore-installed etlalchemy
To run the tool:
from etlalchemy import ETLAlchemySource, ETLAlchemyTarget
# Migrate from SQL Server onto PostgreSQL
src = ETLAlchemySource("mssql+pyodbc://user:passwd@DSN_NAME")
tgt = ETLAlchemyTarget("postgresql://user:passwd@hostname/dbname",
drop_database=True)
tgt.addSource(src)
tgt.migrate()
Since solving my problem with the first pass of etlalchemy, I have spent months adding support for PostgreSQL, MySQL, Oracle, SQL Server, and SQLite. This means that with 4 lines of code, you can do things like migrate from SQL Server onto MySQL, migrate from Oracle onto PostgreSQL, or in my case migrate Oracle onto MySQL. Another helpful usecase is to migrate a remote MySQL database onto a local SQLite database to test an application on your local machine.
Happy Database Migrating!


Becky and Mike
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|
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Here she is, the bride to be, Becky
Rebecca Theresa Hren was born at Euclid General Hospital on April
12, 1979 in Euclid, Ohio. Becky attended the Euclid City Schools
from kindergarten until she graduated in 1997. While there she was
involved in multitudes of activities including cheerleading and
swim team. After graduation Becky attended Ohio Northern University
in Ada, Ohio. She graduated in 2003 with a PharmD (Doctor of Pharmacy)
degree. Becky accepted a clinical pharmacist position with Lake
Hospital System and has been there since the beginning of June.
Her office is located at Lake East in Painesville and that is where
she does a majority of her work with the physicians, nurses and
other pharmacists.
Michael Ohlsen (better known as Mick to his family, Mojo or Mohlsen
to his buds and as Jimmy to the Hren family [do not ask]) has an
obvious identity crisis going on. Mike was born on June 29, 1977
in Meadville, Pennsylvania. He lived in Meadville for 10 years before
his family packed up and headed to Wooster, Ohio. There Mike finished
his schooling and graduated in 1996 from Wooster High School. From
there Mike was off to Ohio Northern University to attain his Electrical/Computer
Science Engineering degree. Mike currently works for an engineering
firm called Fenetech in Aurora, Ohio. It is there that he utilizes
all his nerdy computer skills to crank out new software. In Mike’s
spare time he enjoys watching and playing hockey, playing on the
numerous computers he has at home along with networking the house,
getting the most unbelievable deals online, and going out with Becky.
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It was during Becky's freshman year and Mike's sophomore
year that they met. It was early March of 1998, the first weekend
of Spring quarter that they met at a sorority/fraternity party. Beck
is a Delta Zeta and Mike is a member of Delta Sigma Phi. Mike and
Becky agree that they met in the above way, but do not ask the two
when their first kiss was because you will get two completely different
answers! |
|


--- title: BioNetVisA workshop 2021 ---
#
BioNetVisA workshop brings together different actors of network biology from database providers, networks creators, computational biologists, biotech companies involved in data analysis and modeling to experimental biologists, clinicians that use systems biology approaches. The participants are exposed to the different paradigms of network biology and the latest achievements in the field.
### MotivationThe goal of BioNetVisA workshop is to build a discussion around various approaches for biological knowledge formalisation, data integration and analysis; compatibility between different methods and biological networks resources available the field; applicability for concrete research and clinical projects depending on scientific question and type of high-throughput data.
The BioNetVisA workshop aims at identifying bottlenecks and proposing short- and long-term objectives for the community as discussing questions about accessibility of available tools for wide range of user in every-day standalone application in biological and clinical labs. In addition, the possibilities for collective efforts by academic researchers, clinicians, biotech companies and future development directions in the field will be discussed during the round table panel.
### BioNetVisA 2020 Program| 8:30 - 9:00 Registration |
| Session 1 |
| 9:00 - 9:30 Henning Hermjakob EMBL-EBI, Cambridge, UK |
| 9:30 - 10:00 Åsmund Flobak NTNU, Trondheim, NO |
| 10:00 - 10:15 Talk selected from abstracts |
10:15 - 1045: Coffee break
| Session 2 |
| 10:45 - 11:15 Laura Cantini IBENS – ENS, Paris, FR |
| 11:15 - 11:45 Valentina Boeva ETH, Zurich, CH |
| 11:45 - 12:00 Talk selected from abstracts |
| 12:00 - 12:15 Talk selected from abstracts |
12:15 - 13:30: Lunch
| Session 3 |
| 13:30 - 14:00 Alexander Kel neXplain, Wolfenbüttel, DE |
| 14:00 - 14:30 Thomas Helikar University of Nebraska, Nebraska, US |
| 14:30 - 15:00 Rupert W Overall Technische Universität Dresden, DES |
| 15:00 - 15:15 Talk selected from abstracts |
| 15:30 - 15: 45 Talk selected from abstracts |
| 15:45 - 16:00 Round table |
17:00: Start bc2 (Welcome words and lecture)
16:30 - 22:00 bc2 Welcome drinks and "party"
| August 1 | Abstracts submission deadline |
| August 5 | Selected speaker's notification |
| September 5 | Registration deadline |
| September 13 | BioNetVisA 2021 workshop |
Graphical representation of biological knowledge
Molecular interaction and pathway databases
Comprehensive signalling networks
Networks annotation and curation
High-throughput data visualization, analysis and interpretation in the context of networks
Multi-scale networks (genome, epigenome, transcriptome, proteome, metabolome, lipidome..)
Contextualization of networks (species, diseases, developmental stages…)
Networks of inter-cellular communication
Network modelling
Machine learning/Artificial Intelligence approaches in network biology
Basic research and clinical application of networks
Microbiome and networks
Single-cell data and network inference
Networks for drug repositioning and disease coomorbidity
We invite to submit your abstract for a talk or a poster in the topics described above.
The submission deadline is on August 1st 2021
Submitted abstracts will be reviewed by the scientific program committee and a notification of acceptance for a talk or a poster will be provided to the corresponding author by August 5th, 2021
Abstract format:
Title
List of authors (the first author is the presenting autor)
Affiliations
Abstract text in unstructured format (maximum 300 words)
## Submission process
The link below will take you to the EasyChair submission page. Once logged, click on the 'Submission' tab to start the submission process. Enter authors, title without HTML elements, abstract up to 300 words, keywords, and indicate three-five relevant topics.
To assist us with creating the abstract booklet, please upload the same abstract as a word document in the section called "Upload Paper" using this TEMPLATE
When the form is adequately filled out, press the 'Submit' button. You will receive an email from the conference "EasyChair". This email is solely a notification that EasyChair for BioNetVisA2019 has received the abstract.
##Submit your abstract here
Please note that all registrations to the workshop and accommodation arrangements have to be done through the [BC]2 registration webpage
### Venue
University of Basel
Kollegienhaus
Petersplatz 1
4001 Basel, Switzerland
### Organising committee
Emmanuel Barillot (Institut Curie, France)
Hioraki Kitano (Laboratory for Disease Systems Modeling, RIKEN Center for Integrative Medical Sciences, Japan)
Inna Kuperstein (Institut Curie, France)
Cristobal Monraz Gomez (Institut Curie, France)
Andrei Zinovyev (Institut Curie, France)
Samik Ghosh (Systems Biology Institute, Tokyo, Japan)
Robin Haw (Ontario Institute for Cancer Research, Canada)
Alfonso Valencia (Barcelona Supercomputing Center, Barcelona, Spain)
bionetvisa@curie.fr


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vignettes/rstudio_ide.Rmd
The current daily builds of RStudio IDE include experimental support for the reticulate package, including:
Support for executing reticulated Python chunks within R Notebooks.
Line-by-line execution of Python code using the reticulate repl_python()
function.
Sourcing Python scripts using the reticulate source_python()
function.
Code completion and inline help for Python.
Display of matplotlib plots within both notebook and console execution modes.
A note about the philosophy behind Python tools within RStudio: these tools are not intended for standalone Python work but rather explicitly aimed at the integration of Python into R projects (and as such are closely tied to the reticulate package).
There are many IDEs available for doing data science with Python including JupyterLab, Rodeo, Spyder, and Visual Studio Code, and we strongly recommend using one of them for Python-only projects. However, if you are using reticulated Python within an R project then RStudio provides a set of tools that we think you will find extremely helpful.
You can download the current daily build of RStudio for various platforms here:
Note that RStudio daily builds are intended for testing purposes, and are not recommended for general use. If you use the daily build to try out the new features please report bugs at https://github.com/rstudio/rstudio/issues.
Al of the features described below require that you have previously installed the reticulate package, which you can do as follows:
R Notebooks have been enhanced to support executing Python chunks using the reticulate Python engine. For example:
You can execute code from Python scripts line-by-line using the Run button (or Control+Enter) in the same way as you execute R code line-by-line. RStudio will automatically switch into reticulate’s repl_python()
mode whenever you execute lines from a Python script:
Type exit
from the Python REPL to exit back into R (RStudio will also automatically switch back to R mode whenever you execute code from an R script).
Click the editor’s Source Script button within a Python source file to execute a script using reticulate’s source_python()
function:


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Lorem Ipsum is simply dummy text of the printing and typesetting industry. Lorem Ipsum has been the industry's standard dummy text ever since the 1500s, when an unknown printer took a galley of type and scrambled it to make a type specimen book. It has survived not only five centuries, but also the leap into electronic typesetting... Learn More.
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Keeping the Faith (2000) 5.0 stars out of 5.0 stars
Cast: Ben Stiller, Edward Norton, Jenna Elfman, Eli Wallach, Anne Bancroft, Brian George, Ron Rifkin, Milos Forman, Rena Sofer, Holland Taylor Written by: Stuart Blumberg Directed by: Edward Norton Running Time: 128 minutes
Barring the obvious comparisons to any jokes, priest Brian (Edward Norton, making his directorial debut), and rabbi Jacob (Ben Stiller), both fall for their grade school chum Anna Reilly (Jenna Elfman) when she blows into town on a business trip. Brian believes Anna has fallen in love with him over the course of the few weeks she's been in town when in truth, she has actually started seeing Jacob. Jacob is happy with their noncommittal relationship at first, but when Anna starts to get serious, he begins to have doubts about what his parishioners and mother will think about his relationship with a non-Jewish girl. Can Brian forgive Jacob for lying to him about the relationship he has been in? Can Anna forgive Jacob for placing his career above their relationship? Will Jacob's congregation and mother understand and accept that he's in love with a gentile?
Every once and a while, a film somehow manages to capture my frame of mind perfectly and for the entire running length of said film, I am completely in tune with the message being conveyed. Keeping the Faith was just such a movie (Instinct is another good example of one). Although I'm not personally embroiled in a struggle over a girl with a friend of mine, I was somehow able to relate to all of these characters' struggles in my own personal way. I won't bore anyone with the details but suffice to say, the theme of choice is a major one in the film and I have been faced with several MAJOR life altering choices of my own in the last two months.
The performances are remarkably solid in this film. Edward Norton has quickly become one of my favorite actors (and certainly one of the best of the newer crop) and here he certainly doesn't disappoint, even getting to show off a little bit of his slapstick ability. The scene where Anna and Jacob's relationship is revealed to Norton's character is utterly amazing, and really shows off his ability as an actor. Ben Stiller is always reliable as a comedic actor and here it is no different, but we also get a chance to see his rare dramatic side (which oddly still contains a hint of comedy). The always gorgeous Jenna Elfman gets a chance to shine as well, with a deftly balanced role as the hard edged business woman that still remembers her childhood hanging out with the guys and longs to rekindle that spirit again. All three actors share such a camaraderie and natural chemistry in this film that it almost seems as if they did spend their childhoods together.
The supporting cast turns in pretty decent performances as well. Eli Wallach plays the understanding mentor to Stiller's rabbi Jacob character, Lisa Edelstien plays the rough and tumble date that Jacob has been set up on (most of the scenes of which are shown in the trailer, but all of which occur fairly early on in the film), Anne Bancroft is perfect as Jacob's understanding but imperfect mother, and Ron Rifkin (the heavy in films like The Negotiator and, to a lesser extent, Boiler Room) plays the head of a board of rabbis that will either make or break Jacob's career in the synagogue. Perhaps the biggest surprise comes from the appearance of director Milos Forman (who directed Norton in The People vs. Larry Flynt) as a wise priest who teaches Brian to decide what's best for himself and his faith.
Despite the romantic comedy clichés Keeping the Faith seems trapped in, the screenplay remains fairly intelligent. None of the emotions seem forced, and the comedy certainly doesn't (despite a pretty awful joke towards the end of the film involving a woman's comment about confessions "these days"). Although it may date the film in the long run, it is also very topical. There are several in-jokes about recent films (released within the last five years) and countless other modern pop culture references scattered throughout.
I found Keeping the Faith to be an extremely good film. Who knows, depending on the way things turn out in the next few years I may look back on this movie and feel totally different about it. For now though, I find it to be incredibly charming and intelligent, and for once I actually agree with everyone who says it would make a good date film. [PG-13]
Reviewed by Brian Matherly -<EMAIL_ADDRESS>The Jacksonville Film Journal - http://www.jaxfilmjournal.com/
The review above was posted to the
rec.arts.movies.reviews newsgroup (de.rec.film.kritiken for German reviews).
The Internet Movie Database accepts no responsibility for the contents of the
review and has no editorial control. Unless stated otherwise, the copyright
belongs to the author.
Please direct comments/criticisms of the review to relevant newsgroups.
Broken URLs inthe reviews are the responsibility of the author.
The formatting of the review is likely to differ from the original due
to ASCII to HTML conversion.
Related links: index of all rec.arts.movies.reviews reviews


--- layout: minimal title: "About me" permalink: /about/index.html description: "Some description about LI Xiang..." ---
I am a student in HKUST, and my major is computer engineering.
simultaneously localization and mapping(SLAM), autonomous vehicle(AV), brain-computer interface(BCI),neuromorphic computing


About Me
Welcome! Now that you know some random things about me, I can tell you a bit more about where I'm from, what I do, and what my interests are.
My name is Esther Suk. I am a former public health professional from Seattle, Washington with 6+ years in customer service who made the jump to software development to expand my skill set. My passion has always been to drive business through client and patient experience. I'm looking to apply development skills to use an innovative, user-centric approach to solve problems. I believe that problem solving should be organic, information-based, and iterative. My experience in qualitative research academically and globally remains one of my strongest assets. In my spare time, you'll find me cooking, at a live comedy show, at a concert, or ofcourse, spending time with my dogs.
Top Ten Places I want to Visit


Administrators can add users within an organization if they have their first name, last name, role, and Business BCeID.
Please confirm that all details you entered are correct by reading through the summary below.


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---
layout: archive
title: "Teaching"
permalink: /teaching/
author_profile: true
---
{% assign teaching_posts_grouped_by_venue = site.teaching | group_by: "venue" %}
{% assign imperial_posts = site.teaching | where: 'venue', "Imperial College London, Department of Infectious Disease Epidemiology" %}
{% if imperial_posts.size > 0 %}
Imperial College London, Department of Infectious Disease Epidemiology
{% for post in imperial_posts %}
{% include archive-single.html %}
{% endfor %}
{% endif %}
{% for venue_group in teaching_posts_grouped_by_venue %}
{% unless venue_group.name == "Imperial College London, Department of Infectious Disease Epidemiology" %}
{{ venue_group.name }}
{% assign posts_sorted_by_date = venue_group.items | sort: 'date' | reverse %}
{% for post in posts_sorted_by_date %}
{% include archive-single.html %}
{% endfor %}
{% endunless %}
{% endfor %}


Integer part of division of two Real numbers
div(x, y)
Returns the algebraic quotient x/y
with any
fractional part discarded (also known as truncation toward zero).
[Note: this is defined for / in C99; in C89 the result for
negative numbers is implementation-defined, so the standard
function div()
must be used.] Result and
arguments shall have type Real or Integer. If either of the
arguments is Real the result is Real otherwise Integer.
[Note, outside of a when clause state events are triggered when the return value changes discontinuously.]
div(13,6) = 2


Gateway
BOT
04-Sep-18 02:32 AM
[dscrdeql] <Smoky Satoshi> Test
[dscrdeql] <Smoky Satoshi> Active
[dscrdeql] <Smoky Satoshi> Lvl 2
[dscrdeql] <Smoky Satoshi> Need lvl 2 for rain?
[dscrdeql] <Linkara6669-Mod> hey hey peeps!
[dscrdeql] <Linkara6669-Mod> how's it going today?
[dscrdeql] <Linkara6669-Mod> i am on my last overnight shift! yay! lol
[dscrdeql] <Smoky Satoshi> Gravryard. Yuk
[dscrdeql] <c2k> @Smoky Satoshi yes you need to be level 2 for rain
[dscrdeql] <Smoky Satoshi> Ok
[dscrdeql] <Smoky Satoshi> No worries
[dscrdeql] <c2k> you keep chatting and you will be there quickly
[dscrdeql] <c2k> usuallyhappens in the first hour or so
[dscrdeql] <Smoky Satoshi> No spamming on my part
[dscrdeql] <c2k> find a room with some peeps and talk about the project, bitcoin, etc
[dscrdeql] <c2k> u will level up fast
[dscrdeql] <Smoky Satoshi> I heard that komodo ia doing good
[dscrdeql] <c2k> komodo is amazing
[dscrdeql] <c2k> are you new to komodo?
[dscrdeql] <Smoky Satoshi> I never hearf of it till today
[dscrdeql] <c2k> great project with an amazing lead dev in jl777
[dscrdeql] <c2k> they do dICO's, have 2 DEX's, and a growing ecosystem
[dscrdeql] <Smoky Satoshi> Is it platform?
[dscrdeql] <Smoky Satoshi> Ahh ok
[dscrdeql] <Smoky Satoshi> So like eth or eos
[dscrdeql] <c2k> check out the website for more info. reallyactive discord
[dscrdeql] <c2k> like eth but much better
[dscrdeql] <c2k> they can do many many more transactions per second
[dscrdeql] <c2k> cheap to transfer and super fast
[dscrdeql] <Smoky Satoshi> Ok
[dscrdeql] <Smoky Satoshi> K
[dscrdeql] <c2k> took me a few months to learn about everythig because they have so much goin on
[dscrdeql] <Smoky Satoshi> You dev?
[dscrdeql] <c2k> ru in the komodo discord yet?
[dscrdeql] <Smoky Satoshi> No. Not yet
[dscrdeql] <c2k> no not a dev. but been involved with kmd since last yr
[dscrdeql] <Smoky Satoshi> Send invite please?
[dscrdeql] <c2k> spend a little time reading the whitepaper. thats the "easy" part i guess
[dscrdeql] <c2k> their DEX is very forward although can be a little clunkuy to use. its not that intuitive yet but 100% anonymous
[dscrdeql] <c2k> and if you hold KMD in their Agama wallet you often get airdrops
[dscrdeql] <c2k> its a growing ecosystem. if you re looking for a very forward thinking and visionary ecosystem i think u will like it a lot
[dscrdeql] <Smoky Satoshi> I was in here this morning. And bought about 125 kmd
[dscrdeql] <Smoky Satoshi> The price looked good to me
[dscrdeql] <c2k> when you want to see your level you can check in off-topic or DM the Tipsy(eqli) bot.
bype "?level" to check your level and "?bal" to check your balance
both without """"
[dscrdeql] <c2k> 125 kmd is a good start
[dscrdeql] <c2k> did u put it in the agama wallet?
[dscrdeql] <Smoky Satoshi> Yes
[dscrdeql] <Smoky Satoshi> So you say it have airdrop?
[dscrdeql] <c2k> good. you get the 5% rewards there
[dscrdeql] <Smoky Satoshi> 5%? Like staking?
[dscrdeql] <c2k> the latest airdrop was for Chainzilla
[dscrdeql] <c2k> yes 5% rewards for staking
[dscrdeql] <Smoky Satoshi> Hmmmm
[dscrdeql] <c2k> claim maybe 1x per week and it compounds
[dscrdeql] <Smoky Satoshi> When was airdrop
[dscrdeql] <Smoky Satoshi> And how to claim?
[dscrdeql] <c2k> aug 15th record date and aug 30th airdrop date
[dscrdeql] <c2k> no more claim for them.
[dscrdeql] <c2k> BUT, you can still get in on bounties
[dscrdeql] <c2k> they do one every day or 2
[dscrdeql] <c2k> sent you invite if you want to look into it
[dscrdeql] <Smoky Satoshi> You confused me
[dscrdeql] <Smoky Satoshi> I have to claim 5% komodo?
[dscrdeql] <c2k> once in agama it accrues the reward automatically
[dscrdeql] <c2k> you will see what youre "earning" in a green box
[dscrdeql] <Smoky Satoshi> How often
[dscrdeql] <c2k> whenever you log in you can see it accumulating
[dscrdeql] <Smoky Satoshi> Let me check in a few minutes..
[dscrdeql] <Smoky Satoshi> Be right back
[dscrdeql] <c2k> you will see a green box below your balance
[dscrdeql] <c2k> it says "claim now"
[dscrdeql] <Smoky Satoshi> Sweet..
[dscrdeql] <c2k> today was actually a big day for kmd
(edited)
[dscrdeql] <c2k> apparently there is a big wall buyer around of 100btc
[dscrdeql] <c2k> so it looks like u got in at a good time
[dscrdeql] <c2k> agama is a multi-wallet
[dscrdeql] <c2k> if you have other coins you can put them in there also...all with the same key
[dscrdeql] <c2k> some of the other kmd ecosystem coins actuallyhave the same address. but if you send or buy chainzilla for instance and use the same address they hit the appropriate wallet...
[dscrdeql] <c2k> just so u know
[dscrdeql] <Jellysmash> Hey guys @c2k @linkara6669
[dscrdeql] <c2k> hey there @Jellysmash


{% extends "bootstrap/base.html" %} {% import "bootstrap/wtf.html" as wtf %}
Android Application Statistics.
IOS Application Statistics.


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|
ArkGameFrame
v0.1.0
ArkGameFraime is a lightweight, fast, scalable, distributed module and plugin framework to create a game server easily. Greatly inspired by OGRE and Bigworld.
|
#include <algorithm>
#include <ctype.h>
#include "NFConfigPlugin.h"
#include "NFCElementModule.h"
#include "NFCClassModule.h"


Overview
I am broadly interested in understanding and solving problems related to developing software applications, from embedded software-controlled devices and mobile applications to large software-intensive systems. My objective is to study and improve software engineering techniques that boost the productivity of software developers while preserving the quality (performance, security, reliability, usability, maintainability) of the resulting software products. My work is shaped by observations from empirical studies and industrial experience with real-world systems. I have studied software development in a variety of domains, from bioinformatics to telecommunications. I am interested in improving techniques for different levels of expertise, from educating novice student programmers to supporting veteran software engineers. I have received funding from federal as well as industrial sources.
Understanding Software Evolution
Successful software is continuously modified over time in order to maintain its usefulness – this phenomenon is known as software evolution. My work is mainly on understanding the factors that make software, especially large software systems, easily modifiable and extensible, and evaluating development techniques that facilitate long term software development. My contributions include approaches for studying software history through analysis of software repositories, borrowing techniques from data mining, statistical modeling, graph theory, and data visualization. These analyses have served to provide a better understanding of how long-lived software products have changed over time as well as evaluating the effectiveness and limitations of various reengineering technologies such as software product line engineering and aspect-oriented programming.
Modeling Software Reliability and Security
With the increasing dependence on software controlled applications, software reliability and security have become paramount concerns. My contributions to software reliability include statistical models for predicting software faults and failures, and Petri-net models of software architecture for reliability and capacity analysis. My contributions to software security include classification models of software vulnerability reports to improve categorization and understanding of software security weaknesses and formal specification of legal requirements for security compliance analysis.
Computing Education Research
Educating future software engineers starts with a well-laid foundation in computer science. Industry demands for software engineers continue to outstrip what universities are able to graduate due to insufficient enrollment. Improving the pipeline of students pursuing university degrees that prepare them to be software engineers must deal with two related problems: revitalizing the K-12 computer science education curriculum and preparing teachers to teach K-12 computer science. My research looks at new approaches for CS curriculum design that focus on programming as a problem solving tool rather than programming for its own sake, and how to shift teacher attitudes from focusing on computing technology to focusing on a problem in need of a computational solution.


Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
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C
calculateTFIDFForAllWords()
- Method in class nlp.
TFIDFHandler
Calculate the tf*idf value for each word and store it into its
MyDocument
object where it belongs to.
compareTo(Object)
- Method in class nlp.
TagWithTFIDF
Compare two objects with their score values.
ComponentRegistry
- Class in
registry
A registry class for various components in Overherd.
CONTENT_ANALYZED
- Static variable in class registry.
ValueRegistry
Make it true if the lengthy content analysis is done, so it'll only process once.
CONVERSATION_KEYWORD_TAB_VIEW
- Static variable in class registry.
ValueRegistry
To keep track of which "mode" the author-topic view's content viewer currently is.
CONVERSATION_SENTENCE_TAB_VIEW
- Static variable in class registry.
ValueRegistry
CONVERSATION_TEXT_TAB_VIEW
- Static variable in class registry.
ValueRegistry
To keep track of which "mode" the author-topic view's content viewer currently is.
countConversationInstance(String)
- Method in class ui.authormap.data.
UserConversationMap
Counts and returns the number of conversation this student had with otherUser.
countConversationInstances()
- Method in class ui.authormap.data.
UserConversationMap
Counts and returns the number of conversations this student had with all others.
countUsersTalkedTo()
- Method in class ui.authormap.data.
UserConversationMap
Counts and returns the number of students this student talked to.
createAndShowGUI(String)
- Method in class ui.treemap.
MainUI
Initialize and set up the main GUI.
createChart(XYDataset)
- Static method in class ui.chart.
TimeChart
createConversationMatrix()
- Method in class ui.authormap.viz.
AuthorTopicViz
Creates a matrix of conversation, so each student is mapped to a list of other students with conversatoin content
createDataSet()
- Method in class ui.chart.
TimeChart
Build a dataset to be used to create the chart If associatedTreeMap is not set, create an empty dataset.
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
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B
C
D
E
F
G
H
I
K
L
M
N
P
R
S
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U
V


@import backend.membership.api.MemberDto @import backend.auth.AuthContext @import backend.common.types.member.{Owner, StandardMember} @import helper._ @(member: MemberDto)(implicit assetsFinder: AssetsFinder, request: MessagesRequestHeader, context: AuthContext) @main( ViewCommonData( title = s"Member ${member.name}", breadCrumbs = Seq( BreadCrumb("Membership", Some(routes.MembershipController.index.url)), BreadCrumb(member.name) ) ), assetsFinder) {
| Member ID | @member.id | |
| Name | @member.name | Change name |
| @member.email | Change email | |
| Role | @member.role | @if(context.currentMemberRole == Owner) { @if(member.role == StandardMember) { @helper.form(action = routes.MembershipController.makeMemberAnOwner(member.id)) { @CSRF.formField } } else { @if(member.id != context.currentMemberId) { @helper.form(action = routes.MembershipController.makeMemberAStandardMember(member.id)) { @CSRF.formField } } } } |
| Became Member At | @member.becameMemberAt |


Two men arrested and firearm seized in Dublin
by By Digital Desk staffTwo men have been arrested and a firearm has been seized by gardaí in Dublin.
Gardaí said a premises in the Clondalkin area was searched yesterday as a result of an intelligence-led operation.
The search was carried out by members of An Garda Síochána attached to the Garda National Drugs and Organised Crime Bureau (GNDOCB), supported by Crime and Security Section, the Emergency Response Unit (ERU) and the DMR.
Gardaí said two men, aged in their 20s and 30s were arrested.
The said a loaded firearm and ammunition were also seized.
Gardaí said both males are detained pursuant to the provisions of Section 30 of the Offences Against The State Act 1939/98 at Clondalkin Garda Station.
"This is yet another successful intervention by the Garda Síochána in a potential threat to life incident, involving the seizure of a loaded firearm and the arrest of suspects," said Assistant Commissioner John O’Driscoll of Special Crime Operations.


A short simple informative message. It can
be multiline if you need it
A short simple informative message. It can
be multiline if you need it
A short simple informative message. It can
be multiline if you need it
A short simple informative message. It can
be multiline if you need it


How to Fix Frozen App Store Issues On Your MAC
by Karanpreet SinghJust like Android’s Google Play Store and Windows Store, Mac also has an App store from where we can find and download apps. Installing apps from the Mac App Store is an easy process and it usually takes just a few clicks. However, just like every other app store, the Mac App Store also has few bugs.
Recently, lots of Mac users have reported that they were experiencing an unusual error message while using the App store. They claimed that the App store gets stuck at a point for no reason. Although it doesn’t happen all the time, still it’s always best to fix the issue.
Whether apps fail to download, you get errors while installing apps, or even the app store is stuck, below we are going to share some easy workaround that could help you deal with the most common issues of Mac App Store. So, in this article, we are going to share some of the best methods to fix Frozen app store issues on Mac computer.
Contents:
How to Fix Frozen App Store Issues On Your MAC
The method that had been shared in this article is not focused only on fixing the frozen app store issue, but it will also help you deal with the most common Mac App store problems and issues. So, let’s check out some of the best methods to fix Mac App store problems 2019.
#1 Force Quit App (Using Force Quit Window)
In this method, we are going to force quit the Mac App Store to fix frozen app store issues on Mac. Not just the frozen app store, but it will also help you fix most of the App store related problems on Mac computer.
Step 1. Make sure that the App Store is still running and if it so then proceeds to the process
Step 2. Just press up the “Command + Option” keys from your keyboard which will launch the Force Quit Applications Window.
Step 3. Choose “App Store” from the list of the app if it appears through this window and then after that click on the Force Quit button. This will close up the App store immediately and therefore you can launch it again where it would run perfectly.
That’s it, you are done! Now just restart your Mac computer to fix frozen app store issues on your Mac computer 2019.
#2 Force Quit App ( From the Dock)
Well, this is another method to force quit app from Mac computers. Follow some of the simple steps given below to force quit an app from the dock.
Step 1. First of all, make sure that the App Store is still running and if it so then proceeds to the process
Step 2. Press and Hold down the “Option” key on your keyboard and right-click on the App Store Icon from the Dock
Step 3. You would see that the Quit button is replaced by the Force Quit Button. Just click on it to close up the app.
After that, you can easily run up the App store perfectly again
#3 Kill App Store Process
Well, if the force quit method doesn’t show the app store on the list, then you can consider this method. This process will let you know how to kill the app store process.
Step 1. Launch up the Activity Monitor on your Mac screen. Click or select up the CPU tab from there to go to the CPU options.
Step 2. When you will reach the next screen just find out the App Store option and then select it from there.
After selection click on the X button placed on the above of the panel, confirm the prompt and the App will force quit and therefore you can easily open it again.
#4 Delete Cache Files of App Store
Outdated cache files might be another reason behind the frozen App store on Mac. So, in this method, we are going to delete the cache files of the app store to fix the frozen app store issue.
Step 1. Launch of the Terminal app on the Mac. Type up the Command ” open STMPDIR../c/ ” and press enter.
Step 2. The temp folder would open up will number of folders, just find out the one named “com.apple.appstore” and move it to trash.
Just force quit the app if required and then run it again.
So, this article is all about how to fix frozen app store issues on your Mac. By following these methods, you can fix up the Frozen App store issue of the Mac device. I hope this article helped you! Share it with your friends also. If you have any doubts related to this, let us know in the comment box below.


ora.Rd
This function wraps limma::kegga()
to perform biased overrepresntation
analysis over gene set collection stored in a GeneSetDb (gsd
) object. Its
easiest to use this function when the biases and selection criteria are
stored as columns of the input data.frame dat
.
ora( gsd, dat, selected = "significant", groups = NULL, feature.bias = NULL, universe = NULL, restrict.universe = FALSE, plot.bias = FALSE, ..., as.dt = FALSE, .pipelined = FALSE )
| gsd | The GeneSetDb |
|---|---|
| dat | A data.frame with feature-level statistics. Minimally, this should
have a |
| selected | Either the name of a logical column in |
| groups | Encodes groups of features that we can use to test selected
features individual, as well as "all" together. This can be specified by:
(1) specifying a name of a column in |
| feature.bias | If |
| universe | Defaults to all elements in |
| restrict.universe | See same parameter in |
| plot.bias | See |
A data.frame of pathway enrichment. The last N colums are enrichment
statistics per pathway, grouped by the groups
parameter. P.all
are the
stats for all selected features, and the remaingin P.*
columns are for
the features specifed by groups
.
In principle, this test does what goseq
does, however I found that
sometimes calling goseq would throw errors within goseq::nullp()
when
calling makesplines
. I stumbled onto this implementation when googling
for these errors and landing here:
https://support.bioconductor.org/p/65789/#65914
The meat and potatoes of this function's code was extracted from
limma::kegga()
, written by Gordon Smyth and Yifang Hu.
Note that the BiasedUrn CRAN package needs to be installed to support biased enrichment testing
Young, M. D., Wakefield, M. J., Smyth, G. K., Oshlack, A. (2010). Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biology 11, R14. http://genomebiology.com/2010/11/2/R14
dgestats <- exampleDgeResult("human", "ensembl") gdb <- getMSigGeneSetDb("h", "human", "ensembl") # Run enrichmnent without accounting for any bias nobias <- ora(gdb, dgestats, selected = "selected", groups = "direction", feature.bias = NULL) # Run enrichment and account for gene length lbias <- ora(gdb, dgestats, selected = "selected", feature.bias = "effective_length") # plot length bias with DGE status plot_ora_bias(dgestats, "selected", "effective_length")# induce length bias and see what is the what ............................... biased <- dgestats[order(dgestats$pval),] biased$effective_length <- sort(biased$effective_length, decreasing = TRUE) plot_ora_bias(biased, "selected", "effective_length")etest <- ora(gdb, biased, selected = "selected", groups = "direction", feature.bias = "effective_length")


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Tari Protocol Discussion 39
Tari Digital Assets Network
Read moreUnderstanding RAIN_IDs and their role in namespace registration
Read moreUnderstanding the mechanics of namespace registration and asset creation
Read moreArchival nodes, pruned nodes, and understanding pruning horizons
Read moreNaming conventions for VN committees, and node syncing proposals
Read moreCut-throughs for blockchain consensus, and tax implications for privacy coins
Read moreBuilding communication networks for the different components of the Tari ecosystem
Read moreValidator node fees and achieving consensus with merkle-root checkpoints
Read moreAchieving reliable consensus with second layer validator nodes.
Read moreDo range proofs need their own merkle roots in the transaction kernel?
Read moreA Counterparty type model for second layer instructions and the value of base layer primitives.
Read moreSecond layer validator nodes and their role in executing digital asset instructions.
Read moreSpeed, decentralization, and security trade-offs on the Tari protocol's second layer.
Read moreTools for Monero mining pools, wire protocol choices, threading models, and more.
Read moreUse cases for private digital assets on public networks and MimbleWimble implementation ideas.
Read moreDesirable Tari protocol features and the must-have requirements for digital assets and their tokens.
Read moreThe first of many Tari protocol architecture discussions on Freenode in
Read more