| 1 | /* =========================================================== | |
| 2 | * JFreeChart : a free chart library for the Java(tm) platform | |
| 3 | * =========================================================== | |
| 4 | * | |
| 5 | * (C) Copyright 2000-2008, by Object Refinery Limited and Contributors. | |
| 6 | * | |
| 7 | * Project Info: http://www.jfree.org/jfreechart/index.html | |
| 8 | * | |
| 9 | * This library is free software; you can redistribute it and/or modify it | |
| 10 | * under the terms of the GNU Lesser General Public License as published by | |
| 11 | * the Free Software Foundation; either version 2.1 of the License, or | |
| 12 | * (at your option) any later version. | |
| 13 | * | |
| 14 | * This library is distributed in the hope that it will be useful, but | |
| 15 | * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY | |
| 16 | * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public | |
| 17 | * License for more details. | |
| 18 | * | |
| 19 | * You should have received a copy of the GNU Lesser General Public | |
| 20 | * License along with this library; if not, write to the Free Software | |
| 21 | * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, | |
| 22 | * USA. | |
| 23 | * | |
| 24 | * [Java is a trademark or registered trademark of Sun Microsystems, Inc. | |
| 25 | * in the United States and other countries.] | |
| 26 | * | |
| 27 | * ------------------ | |
| 28 | * HistogramType.java | |
| 29 | * ------------------ | |
| 30 | * (C) Copyright 2004-2008, by Object Refinery Limited and Contributors. | |
| 31 | * | |
| 32 | * Original Author: David Gilbert (for Object Refinery Limited); | |
| 33 | * Contributor(s): -; | |
| 34 | * | |
| 35 | * Changes | |
| 36 | * ------- | |
| 37 | * 05-Mar-2004 : Version 1 (DG); | |
| 38 | * | |
| 39 | */ | |
| 40 | ||
| 41 | package org.jfree.data.statistics; | |
| 42 | ||
| 43 | import java.io.ObjectStreamException; | |
| 44 | import java.io.Serializable; | |
| 45 | ||
| 46 | /** | |
| 47 | * A class for creating constants to represent the histogram type. See Bloch's | |
| 48 | * enum tip in 'Effective Java'. | |
| 49 | */ | |
| 50 | public class HistogramType implements Serializable { | |
| 51 | ||
| 52 | /** For serialization. */ | |
| 53 | private static final long serialVersionUID =<PHONE_NUMBER>251997727L; | |
| 54 | ||
| 55 | /** Frequency histogram. */ | |
| 56 | public static final HistogramType FREQUENCY | |
| 57 | = new HistogramType("FREQUENCY"); | |
| 58 | ||
| 59 | /** Relative frequency. */ | |
| 60 | public static final HistogramType RELATIVE_FREQUENCY | |
| 61 | = new HistogramType("RELATIVE_FREQUENCY"); | |
| 62 | ||
| 63 | /** Scale area to one. */ | |
| 64 | public static final HistogramType SCALE_AREA_TO_1 | |
| 65 | = new HistogramType("SCALE_AREA_TO_1"); | |
| 66 | ||
| 67 | /** The type name. */ | |
| 68 | private String name; | |
| 69 | ||
| 70 | /** | |
| 71 | * Creates a new type. | |
| 72 | * | |
| 73 | * @param name the name. | |
| 74 | */ | |
| 75 | private HistogramType(String name) { | |
| 76 | this.name = name; | |
| 77 | } | |
| 78 | ||
| 79 | /** | |
| 80 | * Returns a string representing the object. | |
| 81 | * | |
| 82 | * @return The string. | |
| 83 | */ | |
| 84 | public String toString() { | |
| 85 |
1
1. toString : mutated return of Object value for org/jfree/data/statistics/HistogramType::toString to ( if (x != null) null else throw new RuntimeException ) → NO_COVERAGE |
return this.name; |
| 86 | } | |
| 87 | ||
| 88 | /** | |
| 89 | * Tests this type for equality with an arbitrary object. | |
| 90 | * | |
| 91 | * @param obj the object to test against. | |
| 92 | * | |
| 93 | * @return A boolean. | |
| 94 | */ | |
| 95 | public boolean equals(Object obj) { | |
| 96 | ||
| 97 |
1
1. equals : negated conditional → KILLED |
if (obj == null) { |
| 98 |
1
1. equals : replaced return of integer sized value with (x == 0 ? 1 : 0) → NO_COVERAGE |
return false; |
| 99 | } | |
| 100 | ||
| 101 |
1
1. equals : negated conditional → SURVIVED |
if (obj == this) { |
| 102 |
1
1. equals : replaced return of integer sized value with (x == 0 ? 1 : 0) → NO_COVERAGE |
return true; |
| 103 | } | |
| 104 | ||
| 105 |
1
1. equals : negated conditional → KILLED |
if (!(obj instanceof HistogramType)) { |
| 106 |
1
1. equals : replaced return of integer sized value with (x == 0 ? 1 : 0) → NO_COVERAGE |
return false; |
| 107 | } | |
| 108 | ||
| 109 | HistogramType t = (HistogramType) obj; | |
| 110 |
1
1. equals : negated conditional → SURVIVED |
if (!this.name.equals(t.name)) { |
| 111 |
1
1. equals : replaced return of integer sized value with (x == 0 ? 1 : 0) → NO_COVERAGE |
return false; |
| 112 | } | |
| 113 | ||
| 114 |
1
1. equals : replaced return of integer sized value with (x == 0 ? 1 : 0) → KILLED |
return true; |
| 115 | ||
| 116 | } | |
| 117 | ||
| 118 | /** | |
| 119 | * Returns a hash code value for the object. | |
| 120 | * | |
| 121 | * @return The hashcode | |
| 122 | */ | |
| 123 | public int hashCode() { | |
| 124 |
1
1. hashCode : replaced return of integer sized value with (x == 0 ? 1 : 0) → NO_COVERAGE |
return this.name.hashCode(); |
| 125 | } | |
| 126 | ||
| 127 | /** | |
| 128 | * Ensures that serialization returns the unique instances. | |
| 129 | * | |
| 130 | * @return The object. | |
| 131 | * | |
| 132 | * @throws ObjectStreamException if there is a problem. | |
| 133 | */ | |
| 134 | private Object readResolve() throws ObjectStreamException { | |
| 135 |
1
1. readResolve : negated conditional → KILLED |
if (this.equals(HistogramType.FREQUENCY)) { |
| 136 |
1
1. readResolve : mutated return of Object value for org/jfree/data/statistics/HistogramType::readResolve to ( if (x != null) null else throw new RuntimeException ) → KILLED |
return HistogramType.FREQUENCY; |
| 137 | } | |
| 138 |
1
1. readResolve : negated conditional → NO_COVERAGE |
else if (this.equals(HistogramType.RELATIVE_FREQUENCY)) { |
| 139 |
1
1. readResolve : mutated return of Object value for org/jfree/data/statistics/HistogramType::readResolve to ( if (x != null) null else throw new RuntimeException ) → NO_COVERAGE |
return HistogramType.RELATIVE_FREQUENCY; |
| 140 | } | |
| 141 |
1
1. readResolve : negated conditional → NO_COVERAGE |
else if (this.equals(HistogramType.SCALE_AREA_TO_1)) { |
| 142 |
1
1. readResolve : mutated return of Object value for org/jfree/data/statistics/HistogramType::readResolve to ( if (x != null) null else throw new RuntimeException ) → NO_COVERAGE |
return HistogramType.SCALE_AREA_TO_1; |
| 143 | } | |
| 144 |
1
1. readResolve : mutated return of Object value for org/jfree/data/statistics/HistogramType::readResolve to ( if (x != null) null else throw new RuntimeException ) → NO_COVERAGE |
return null; |
| 145 | } | |
| 146 | ||
| 147 | } | |
| 148 | ||
Mutations | ||
| 85 |
1.1 |
|
| 97 |
1.1 |
|
| 98 |
1.1 |
|
| 101 |
1.1 |
|
| 102 |
1.1 |
|
| 105 |
1.1 |
|
| 106 |
1.1 |
|
| 110 |
1.1 |
|
| 111 |
1.1 |
|
| 114 |
1.1 |
|
| 124 |
1.1 |
|
| 135 |
1.1 |
|
| 136 |
1.1 |
|
| 138 |
1.1 |
|
| 139 |
1.1 |
|
| 141 |
1.1 |
|
| 142 |
1.1 |
|
| 144 |
1.1 |


This is the only one of Kuwait's islands to be surrounded by deep water. A small island just 1 mile long and a third of a mile wide, it is uninhabited except for the officials. At one time it was a centre for pearl fishing.
It is now possible to clear into Kuwait at the port on this small island off the coast of Kuwait as there are both Customs and Coast Guard posts here.
Last updated July 2008.
The dock consists of a long jetty. Fuel is available.


TMWriteFile Code Example
long session_handle;
unsigned char state_buffer[15360];
unsigned char write_buffer[500];
short len,file_handle;
/* session_handle set from a call to TMExtendedStartSession */
...
/* get the unique registration number of the device to communicate with using TMFirst,TMNext,TMRom... */
...
/* file_handle set from call to TMCreateFile */
...
/* create the message to write to 'file_handle' */
sprintf(write_buffer,"This is a test");
/* write the file */
len = TMWriteFile(session_handle, state_buffer, file_handle, write_buffer, strlen(write_buffer));
if (len > 0)
{
/* file was written */
...
}
else
{
/* error writing file */
...
}
/* close the opened file with a call to TMCloseFile */
...
/* close the session with a call to TMEndSession */
...


Copyright (c) 1995 Paul Sijben
Aboyne is played on a 5x5 hexagonal board with the following setup.
|
| An example The marked stones are blocked. It it's Red's turn, he can capture the marked blue stone by jumping the non-marked red stone over the marked one. If it's Blue's turn, he can also capture the marked red stone using one of the two possible jumps with capture available. In fact, after that capture, Red does not have valid moves, his only stone is blocked! |
| An endgame
Blue's turn. The marked red stone blocks the two adjacent blue stones. If Blue moves to [1], Red replies moving the non marked stone to [2], blocking the Blue player and winning (in fact it also blocked himself, but it was his turn to move...). Blue should play to [3] and then to [4] in order to capture the marked red stone. Then, he will have a winning position. Red only non-blocked stone does not have enough mobility to counter attack this tactic. |
Some words for the author: Aboyne is a game of tactics. You have to be careful in moving your pieces because if they get too close to your opponent’s you will not be able to move them. You can think of every piece as a centre of its own force field. Once captured in the force field, a piece will not be able to get away. But this works in both ways! Also this force field helps you when you want to jump over you own pieces.
The term Aboyne is taken from "The deeper meaning of Liff." by Douglas Adams and John Lloyd. They define aboyne as:
Aboyne(v) to beat an expert at a game of skill by playing so appallingly that none of his clever tactics or strategies are of any use to him.
Anyone playing this game a few times, and from this experience deriving tactics, will soon experience the motivations for choosing this title.


three.js Hello world
This should show rotation cube wireframe;
It is using three.js (https://threejs.org/) from https://cdnjs.cloudflare.com/ajax/libs/three.js/r71/three.min.js


{% load humanize %}
With Proof of Distributed Computing, an alternative to the standard Proof of Work, miners work on solving problems for the Rosetta@Home project. They are not only getting coins, they also help making the world a little bit better.
| {{ next_superblock }} Next Superblock |
{{ next_budget|intcomma }} Budget |
{{ team_members }} Team members |
| Pos. | Username | Machines | RAC | Total Procs |
|---|---|---|---|---|
| {{ forloop.counter }}. | {{ entry.rosettauser.username }} | {{ entry.machine_count }} | {{ entry.rac|intcomma }} | {{ entry.total_procs }} |


Strive to create custom templates with responsive designs with advanced pre-processing using sass or less.
React, Redux, Angular and all the other various frameworks, libraries and technologies related to them.
Unit and E2E Testing. Good with frameworks like Jasmine - karma, Cypress and Jest
API development using Node Js, Express with toolset including Docker, Bluemix, Azure & Jenkins
TBD
TBD
TBD
TBD


A simple GroupMe bot building and hosting module.
- Source:
- See:
Methods
(static) command(name, descopt, sepopt, respond) → {*}
Adds a command in the form of '/ [arguments]' for the bot to look for in messages and respond to.
Returns the module itself to allow for builder pattern.
Returns the module itself to allow for builder pattern.
Parameters:
| Name | Type | Attributes | Description |
|---|---|---|---|
name |
string | A name for the command which will be called as follows: '/name'. | |
desc |
string |
<optional> |
A description of the command to be added. |
sep |
string |
<optional> |
A RegExp or string to separate the command arguments. |
respond |
commandRespond | A callback which uses the bot to respond to a user command message. |
Returns:
- Type
- *
(static) config(id) → {*}
Configures the module with the ID of the bot.
Returns the module itself to allow for builder pattern.
Returns the module itself to allow for builder pattern.
Parameters:
| Name | Type | Description |
|---|---|---|
id |
string | The GroupMe ID of the bot. |
Returns:
- Type
- *
(static) feature(descopt, check, respond) → {*}
Adds a feature to the bot.
Returns the module itself to allow for builder pattern.
Returns the module itself to allow for builder pattern.
Parameters:
| Name | Type | Attributes | Description |
|---|---|---|---|
desc |
string |
<optional> |
A description of the feature to be added. |
check |
check | A callback which checks if a message should be responded to by the bot. | |
respond |
respond | A callback which uses the bot to respond to a message and which is only called if 'check' returned true. |
Returns:
- Type
- *
(static) help() → {*}
Adds a '/help' command which displays all of the bot's commands and its other described features.
Returns the module itself to allow for builder pattern.
Returns the module itself to allow for builder pattern.
Returns:
- Type
- *
(static) listen(args)
Parameters:
| Name | Type | Description |
|---|---|---|
args |
Arguments, such as a simple port number, passed to the 'listen' function of the 'Server' provided by 'http.createServer'. |
(static) pattern(descopt, pattern, respond) → {*}
Adds a regular expression pattern or literal string for the bot to look for in messages and respond to.
Returns the module itself to allow for builder pattern.
Returns the module itself to allow for builder pattern.
Parameters:
| Name | Type | Attributes | Description |
|---|---|---|---|
desc |
string |
<optional> |
A description of the feature to be added. |
pattern |
RegExp | string | A regular expression pattern or literal string for the bot to look for in messages. | |
respond |
patternRespond | A callback which uses the bot to respond to a message if the pattern matches in it. |
Returns:
- Type
- *
(static) random(name, descopt, supply) → {*}
Adds a command in the form of '/ [arguments]' for the bot to look for in messages and respond to.
Great for querying random quotes or frequently changing input.
Returns the module itself to allow for builder pattern.
Great for querying random quotes or frequently changing input.
Returns the module itself to allow for builder pattern.
Parameters:
| Name | Type | Attributes | Description |
|---|---|---|---|
name |
string | A name for the command which will be called as follows: '/name'. | |
desc |
string |
<optional> |
A description of the command to be added. |
supply |
Array.<string> | stringSupplier | A string array to randomly pick a string from or a string supplier to get a string from for the bot to send. |
Returns:
- Type
- *
(static) send(message, imageUrlopt, cbopt)
Sends a message as the bot to its GroupMe chat.
Parameters:
| Name | Type | Attributes | Description |
|---|---|---|---|
message |
string | A message to send as the bot to its GroupMe chat. | |
imageUrl |
string |
<optional> |
An image URL to send as an attachment with the bot's message. |
cb |
send |
<optional> |
A callback which receives the potential error result of sending a GroupMe bot message. |
(static) use(plugins)
Uses an arbitrary number of plugins.
Parameters:
| Name | Type | Description |
|---|---|---|
plugins |
Array.<Plugin> | An array of plugins. |
Type Definitions
check(message) → {boolean}
A callback which checks if a message should be responded to by the bot.
Parameters:
| Name | Type | Description |
|---|---|---|
message |
Message | The message which was sent by a user. |
Returns:
- Type
- boolean
commandRespond(message)
A callback which uses the bot to respond to a user command message.
Parameters:
| Name | Type | Description |
|---|---|---|
message |
Message | The message which was sent by a user. |
|
Array.<string> | An array of the whitespace separated arguments provided by user after the command. |
Message
A GroupMe message object.
Go to the GroupMe website for more information.
Go to the GroupMe website for more information.
Type:
- Object
Properties:
| Name | Type | Description |
|---|---|---|
attachments |
Array | Array of URLs attached to the message. |
avatar_url |
string | Avatar URL of the user which sent the message. |
created_at |
number | Number indicating when the message was sent. |
group_id |
string | ID of the group where the message was sent. |
id |
string | ID of the message. |
name |
string | Name of the user which sent the message. |
sender_id |
string | |
sender_type |
string | Will always be user (bot does not respond to other bots). |
source_guid |
string | |
system |
boolean | |
text |
string | Actual text of the message. |
user_id |
string | ID of the user which sent the message. |
patternRespond(message)
A callback which uses the bot to respond to a message and pattern matches in it.
Parameters:
| Name | Type | Description |
|---|---|---|
message |
Message | The message which was sent by a user. |
|
RegExpMatchArray | An array of the pattern matches in the message sent by the user. |
Plugin
A plugin.
Type:
- Object
Properties:
| Name | Type | Description |
|---|---|---|
name |
string | A name for the plugin. |
fn |
function | A function to add to the module's members the module as `this`. |
respond(message)
A callback which uses the bot to respond to a message.
Parameters:
| Name | Type | Description |
|---|---|---|
message |
Message | The message which was sent by a user. |
send(erropt)
A callback which receives the potential error result of sending a GroupMe bot message.
Parameters:
| Name | Type | Attributes | Description |
|---|---|---|---|
err |
Error |
<optional> |
Error object indicating why the message could not be sent or undefined if it sent successfully. |
stringSupplier() → {string}
A callback which supplies a message for the bot to send.
Returns:
- Type
- string


Joseph Nix
Self-absorbed Zen/Taoist student
Avatar: Primordial (2)
A creepy feeling.
Focus
| Component |
Focus |
| Paradigm |
Creation is Divine and Alive/It’s All Good |
| Practice |
Martial Arts |
| Instruments |
Artwork, Bodywork, Eye Contact, Meditation, Ordeals and Exertions |
Attributes
| Physical |
Mental |
Social |
| d10 |
d8 |
d6 |
Distinctions
- Tradition: Akashayana
- “Hold the Middle Way” (aka “Perfectionism”) - Nix often gets too focused on “getting it right” and gets stuck, resisting what is or what he wants. Sometimes he finds the balance but more often it is a series of personal struggles against perfectionism.
- “Entranced by Inaction” (aka “Procrastination”) - Nix claims to get drawn too far into the formless and seduced by emptiness and inaction. Most people call it procrastination.
- Dojo Member - Nix does most of his learning and teaching at a nondescript (strangely generic) dojo/meditation center. He isn’t the most charismatic teacher there, but other than the head instructor, Mifune (his mentor), he’s the clearly the most advanced practitioner.
Skills
| Skill |
Trait |
Specialties |
| Academics |
d4 |
| Art |
d6 |
| Athletics |
d8 |
| Cosmology |
d4 |
| Craft |
d4 |
| Drive |
d4 |
| Etiquette |
d4 |
| Fight |
d10 |
| Focus |
d10 |
| Influence |
d6 |
| Investigation |
d4 |
| Occult |
d6 |
| Science |
d4 |
Medicine d6 |
| Shoot |
d4 |
| Stealth |
d4 |
| Streetwise |
d4 |
| Subterfuge |
d6 |
| Survival |
d4 |
| Technology |
d4 |
Arete
d10
Spheres
| Sphere |
Trait |
| Correspondence |
d4 |
| Entropy |
d4 |
| Forces |
d4 |
| Life |
d4 |
| Matter |
d4 |
| Mind |
d10 |
| Prime |
d8 |
| Spirit |
d8 |
| Time |
d4 |
Backgrounds
Arcane d6, Demesne d6, Mentor d6, Resources d6
Questions & Answers
- What was your awakening like?
- Nix was on a solo weekend meditation retreat on a personal quest for deeper levels of asceticism (but lets keep it in perspective, he’s a white dude from San Francisco). He was in some distress from recently breaking up with his long-term girlfriend (she kept disrupting his “Zen”). Somehow, despite his self-absorption and half-assed idea of “emptiness”, he found his way into his Demesne and a local spirit led him to the astral seat of the Akashic Brotherhood.
- Who was the first to find you and teach you about Magick?
- When he came out of his trance, he “found” his way to a local dojo and met a low-ranking Akashic Brother who took him on as a student.
- Do you still have a relationship with them?
- Yes, but now Nix helps teach at the Dojo too
- Do you know any other Mages in SF?
- No one else yet, he’s pretty self absorbed right now.
- How much do you know about other Mages?
- How much do you know about the Reality War?
- It exists. He knows about the reality war to the same degree most Americans know about the war in Afghanistan.
- How much are you involved in the Reality War?
- Why are you in San Francisco right now?
- That’s where Nix grew up and where the dojo is.


BEST IN SHOW A film review by Steve Rhodes Copyright 2000 Steve Rhodes RATING (0 TO ****): *** 1/2
Beatrice, lying sad and limp on her psychiatrist's couch, is emotionally devastated. After walking into her parents bedroom and witnessing, well, you know, she hasn't been the same sense. Her parents, Meg (Parker Posey) and Hamilton Swan (Michael Hitchcock), two type-A yuppie lawyers, are actually her owners -- not that they'd admit it -- since Beatrice is a dog. Of the three, Beatrice is by far the sanest.
In an age in which comedies seem to come only in two flavors, mean and meaner (or crude and cruder), Christopher Guest's BEST IN SHOW is a delightful change of pace. It's a good-spirited comedy that gets laughs the old-fashioned way with sweetness and charm. Guest, whose specialty is mockumentaries, acted in THIS IS SPINAL TAP and acted in, directed and co-wrote WAITING FOR GUFFMAN, which he does again for BEST IN SHOW.
This fake documentary about the world of competitive dog shows is, of course, not really about the dogs but about their owners. With a terrific ensemble cast, many of whom appeared in WAITING FOR GUFFMAN, the story moves from one hilarious episode to another. Although Christopher Guest and Eugene Levy are credited as the writers, the press notes say that most of the lines were purposely improvised, which adds to the mock authenticity.
Guest plays Harlan Pepper, a good olde boy from Pinenut, North Carolina, whose obsession with nut-naming used to drive his mother, well, nuts. His dog, Hubert, is a Bloodhound who bears a resemblance to his owner. Or is it the other way round? Actually this is a trait common to most of the dogs and their owners in BEST IN SHOW.
Beatrice, a tall, thin Weimaraner, looks like her tall, lanky owners except that she doesn't have matching braces like they do. Meg and Hamilton are clothes horses and catalog fanatics, whose favorite game is to take the latest L.L. Bean catalog and try to name all of the new items in less than five minutes. As Meg puts it gushingly, "We are so lucky to have been raised among catalogs!"
No one can play the hyperactive bitch role with more charm and grace than Posey, who may be best known for her role as Tom Hank's live-in girlfriend in YOU'VE GOT MAIL. Her best performance, however, was probably her office rebel in CLOCKWATCHERS, a great black satire on cubicle life.
A wealthy, non-talking octogenarian named Leslie Ward Cabot (Patrick Cranshaw) and his cheesy, younger wife, Sherri Ann (Jennifer Coolidge), are proud owners of the two-time Best in Show champion, Rhapsody in White, a Standard Poodle with an outlandish haircut. Sherri Ann, with her bee-stung lips and jumbo-sized breasts, brags about all of things that she and her husband have to talk and to not talk about.
In order to ensure that they'll win the crown again, Sherri has hired professional handler Christy Cummings (Jane Lynch). Christy tells us about her family. Her father was the disciplinarian, whereas her mother's role was to give "unconditional love," which she did until she committed suicide in 1981.
The beauty of the casting is the way that the actors don't seem like actors at all but just ordinary folks. And the most ordinary of the lot is the movie's co-writer Eugene Levy, who plays Gerry Fleck, a gregarious bad-dresser. Gerry, ironically, makes his living as a menswear salesman. He was nicknamed "looper" in school for his tendency to walk in loops since he literally has two left feet.
Gerry and his wife, Cookie (Catherine O'Hara), have a Norwich Terrier. Every guy Cookie runs into seems to have had a liaison with her at some time. ("I banged a lot of waitresses in my day, but you were the best," a man tells her in front of her embarrassed husband at a cocktail party. She smiles, slightly bemused, and the guy walks away.)
When everyone finally gets to the big show, the commentary is provided by a smooth talking Brit, Trevor Beckwith (Jim Piddock), and his obnoxious sidekick, Buck Laughlin (Fred Willard). With everything from sports analogies to proctology analogies, Buck successfully drives his companion and the audience crazy. At our press screening, one of the critics got so into it that he yelled, "Oh shut-up!" to Buck. BEST IN SHOW is the kind of movie that has you forgetting that it is a movie.
I don't want to give too much away, but the winner of the big show is a real dog. After the canine equivalent of the big game ending, the movie has an extended epilogue that is perhaps the best part of the picture. But with a film this funny, it is hard to pick favorites.
BEST IN SHOW runs a fast 1:30. It is rated PG-13 for language and sex-related material and would be fine for kids around 11 and up.
Email<EMAIL_ADDRESS>Web: http://www.InternetReviews.com
The review above was posted to the
rec.arts.movies.reviews newsgroup (de.rec.film.kritiken for German reviews).
The Internet Movie Database accepts no responsibility for the contents of the
review and has no editorial control. Unless stated otherwise, the copyright
belongs to the author.
Please direct comments/criticisms of the review to relevant newsgroups.
Broken URLs inthe reviews are the responsibility of the author.
The formatting of the review is likely to differ from the original due
to ASCII to HTML conversion.
Related links: index of all rec.arts.movies.reviews reviews


San Diego's Premier Hackathon.
UCSD's dankest coffee cart.
Seamless facial recognition checkouts.
Stunning photographic inspiration.
Anonymous Venmo for Bitcoin.
Uber for tutors.
All your search bars on one page


|
Boys
(C. Hugo/P.Williams) |
|
For whatever reason, I feel like I've been wanting you all my life.   Not tryin' to sound conceited but me and you were meant to be You're a sexy guy, I'm a nice girl Let's turn this dance floor into our own little nasty world CHORUS - repeat Tonight let's fly, boy have no fear There's no time to lose And next week, you may not see me here So boy just make your move CHORUS - repeat Come with me, let's fly into the night Boy, tonight is ours Keep lovin' me, make sure you hold me tight Let's head for the stars CHORUS - repeat Can't live with 'em Can't live without 'em |
|
|


The purpose of running a simulation is to acquire performance metrics. Akita uses a tracing system to allow users to extract desired performance metrics from the simulator.
Ticking is a solution that can simplify event-driven simulator design. It provides a cycle-based simulation development experience while can still maintain the performance of event-driven simulation.
So far, we have introduced the essential elements of the Akita simulation framework. This time we use the existing concept to implement a small simulation.
In the last blog, we introduced events and event engines in Akita. In this blog, we introduce another group of concepts: components, ports, and connections.
The goal of Akita is to create a reusable computer architecture framework. With Akita, developers can fast prototype their hardware design.


|
Content Rating
Rate content based on objective content.
|
Public Member Functions | |
| def | setUpClass (cls) |
| def | tearDownClass (cls) |
| def | test_args_none (self) |
| def | test_arg_user_id (self) |
| def | test_arg_default (self) |
| def | test_args_user_id_and_default (self) |
Public Attributes | |
| cat1 | |
| cat2 | |
| cat3 | |
| cat4 | |
| cat5 | |
| user1 | |
| user2 | |
| user_storage1 | |
| user_storage2 | |
Definition at line 9 of file test_categories.py.


Fork me on GitHub
Live Demos of Tiny QWERTY Soft Keyboards
Usage instructions
- ZoomBoard keyboard:
- Tap/Click once on a key and the keyboard will enlarge the tapped area. Tap/Click again on the desired key to enter the character.
- Callout keyboard:
- Press/Click a key and a callout will inform you about the character that will be entered. Release the key to enter the character.
- ZShift keyboard:
- Press/Click a key and a zoomed callout will inform you about the character that will be entered. Release the key to enter the character.
Common shortcuts
- Swipe Up over the keyboard or Press the Up arrow key
- to change keyboard layout forward.
- Swipe Down over the keyboard or Press the Down arrow key
- to change keyboard layout backward.
- Swipe Right over the keyboard or Press the Right arrow key
- to enter a space.
- Swipe Left over the keyboard or Press the Left arrow key
- to delete the previous character.
- Tap/Click on the upper part of the screen or Press the Enter key
- to submit the entered text. Actually nothing gets submitted... it's just a demo.


Outcome
This method supports the outcome Text alternatives available.
Platform
- All web platforms
Technology
- HTML
- CSS
- ARIA
- ePub
Input aspects for testing
- DOM tree
- Accessibility tree
- CSS styling
Summary
Decorative images don’t add information to the content of a page. Text values for these types of images would add audible clutter to screen reader output or could distract users if the topic is different from that in adjacent text. Merely omitting the alternative text can cause problems as some screen readers will try to repair the omission by reading the image filename. Whether to treat an image as decorative or informative is a judgment that only the author can make, based on the reason for including the image on the page.
How it solves user need
Explicitly marking an image as decorative will cause assistive technology to skip over the image as if it didn’t exist on the page. This reduces time and fatigue needed to listen to descriptions of decorative images or long cryptic file names.
When To Use
Decorative images don’t add information to the content of a page. For example, the information provided by the image might already be given using adjacent text, or the image might be included to make the website more visually attractive.
In these cases, a null (empty) alt
text should be provided (alt=""
) so that they can be ignored by assistive technologies, such as screen readers. Text values for these types of images would add audible clutter to screen reader output or could distract users if the topic is different from that in adjacent text. Leaving out the alt
attribute is also not an option because when it is not provided, some screen readers will announce the file name of the image instead.
Whether to treat an image as decorative or informative is a judgment that only the author can make, based on the reason for including the image on the page. Images may be decorative when they are:
- A background behind textual content;
- Visual styling such as borders, spacers, and corners;
- Supplementary to link text to improve its appearance or increase the clickable area;
- Illustrative of adjacent text but not contributing information (“eye-candy”);
- Identified and described by surrounding text.


---
title: "Get a Quote!"
layout: default
noindex: true
sitemap: false
---
What are Mail Merge Shipments?
- Input your Product Dimensions to get a Fixed-Per-Item estimate (no hidden fees)
- Upload your Spreadsheet of Mail Recipients
-
After Uploading you can do one of each:
- Download PDF shipping labels
- Order Labels to be printed and Shipped to you!
- Ship us your stuff and we'll take care of everything!
-
Lets Get Started!


TOWN AND COUNTRY ----------------
Porter Stoddard (Warren Beatty) is a successful architect married to successful fabric designer Ellie (Diane Keaton) for twenty-five years. They and best friends Mona (Goldie Hawn) and Griffin (Garry Shandling) are about to face marital crises in a film most well known for its torturous path to the screen, "Town and Country."
"Town and Country" has a pedigree befitting it's title with an all star cast photographed by Oscar nominated cinematographer William Fraker and mouthing the words of screenwriter Buck Henry ("The Graduate") under the direction of Peter Chelsom ("Funny Bones"). After years of reports of budget overruns and reshoots and the racking up twelve different release dates, the media has been prepped for Beatty's next "Ishtar." So, is it that bad? The answer is no. But it's not very good either.
The major problem with "Town and Country" is that it's unstructured and random. Stoddard is immediately established as a philanderer, having just bedded a flaky cellist (Nastassja Kinski). Next scene finds him and Ellie celebrating their anniversary in Paris with Mona and Griffin. Then Mona spies Griffin hustling a redhead into a motel and begins divorce proceedings (Buck Henry cameos as both couples' divorce lawyer).
Ellie thinks she's overeacting, but sends Porter to support Mona on a trip to check out her family's Mississippi manse. The two childhood friends end up in bed together, making us wonder why they'd never become a couple to begin with. Back home, their second coupling is interrupted by Ellie bursting in to tell Mona she thinks Porter's cheating on her.  The four friends, along with every woman Porter's dallied with, all end up back in New York City somewhat happily ever after.
Although the film begins promisingly, resembling a Woody Allen take on New York City wasps, too many strands drift off into nowhere.  After an amusing early scene that has Porter overhearing three bouts of lovemaking while in search of a nocturnal snack, the six supporting players are dropped except for an out-of-nowhere appearance by the formerly forgotten son. Porter's romantic misadventures with women (other than Mona) are equally mishandled. Once the marital discord begins, the film seems as if it was editted with a machete, stopping and starting, never regaining its rhythm.
While Beatty gets off a few tart observations, his character is mostly passive and bemused. Maybe we're supposed to feel sympathy for an adulterer who doesn't initiate his own sex romps? Keaton's Ellie has a trusting nature that's a result of her own self involvement resulting in an unlikeable character. Hawn smartly recycles her mature sex kitten wives of "The Out of Towners" and "The First Wives' Club" while Shandling's relegated to true second banana status. Kinski is bland and unmotivated. Andie MacDowell takes a weirdly unappealing role and does what she can with the screenplay's most bizarre subplot, which finds Charlton Heston as her rifle toting, billionaire daddy and Marian Seldes as her alcoholic, wheelchair-bound, foul-mouthed mother. Heston and Seldes are fun, as is Jenna Elfman as a Sun Valley bait and tackle salesgirl who brings Porter and Griffin to a Halloween party.
Oscar nominatored cinematographer William Fraker gives the film a nice look, but director Chelsom shows none of the quirkily and blackly humorous depth he brought to films like "Hear My Song" and "Funny Bones." The script is this film's weakest link - it's telling that most of the (few) laughs come from old-fashioned physical slapstick and the sight of Beatty in a bear suit.
While "Town and Country" isn't exactly painful to sit through, it mostly just lays there.
C-
For more Reeling reviews visit www.reelingreviews.com
<EMAIL_ADDRESS><EMAIL_ADDRESS>========== X-RAMR-ID: 28725 X-RT-AuthorID: 1487 X-RT-TitleID: 1107209 X-RT-RatingText: C-
The review above was posted to the
rec.arts.movies.reviews newsgroup (de.rec.film.kritiken for German reviews).
The Internet Movie Database accepts no responsibility for the contents of the
review and has no editorial control. Unless stated otherwise, the copyright
belongs to the author.
Please direct comments/criticisms of the review to relevant newsgroups.
Broken URLs inthe reviews are the responsibility of the author.
The formatting of the review is likely to differ from the original due
to ASCII to HTML conversion.
Related links: index of all rec.arts.movies.reviews reviews


How long users slept at a time.
{% endblock %}


{% extends 'admin/master.html' %} {% block body %}
This is the admin menu of LightSheet Pipeline. To go back to the landing page, please click here.


When opening Word, Excel, and Powerpoint files, the files will move to Microsoft OneDrive before opening in Microsoft 365


Client Status Discovery Service (CSDS)¶
service.status.v2.ClientStatusRequest¶
[service.status.v2.ClientStatusRequest proto]
Request for client status of clients identified by a list of NodeMatchers.
{
"node_matchers": []
}
- node_matchers
(type.matcher.NodeMatcher) Management server can use these match criteria to identify clients. The match follows OR semantics.
service.status.v2.PerXdsConfig¶
[service.status.v2.PerXdsConfig proto]
Detailed config (per xDS) with status.
{
"status": "...",
"listener_config": "{...}",
"cluster_config": "{...}",
"route_config": "{...}",
"scoped_route_config": "{...}"
}
- status
- listener_config
(admin.v2alpha.ListenersConfigDump)
Only one of listener_config, cluster_config, route_config, scoped_route_config may be set.
- cluster_config
(admin.v2alpha.ClustersConfigDump)
Only one of listener_config, cluster_config, route_config, scoped_route_config may be set.
- route_config
(admin.v2alpha.RoutesConfigDump)
Only one of listener_config, cluster_config, route_config, scoped_route_config may be set.
- scoped_route_config
(admin.v2alpha.ScopedRoutesConfigDump)
Only one of listener_config, cluster_config, route_config, scoped_route_config may be set.
service.status.v2.ClientConfig¶
[service.status.v2.ClientConfig proto]
All xds configs for a particular client.
{
"node": "{...}",
"xds_config": []
}
- node
(core.Node) Node for a particular client.
- xds_config
service.status.v2.ClientStatusResponse¶
[service.status.v2.ClientStatusResponse proto]
{
"config": []
}
- config
(service.status.v2.ClientConfig) Client configs for the clients specified in the ClientStatusRequest.
Enum service.status.v2.ConfigStatus¶
[service.status.v2.ConfigStatus proto]
Status of a config.
- UNKNOWN
(DEFAULT) Status info is not available/unknown.
- SYNCED
Management server has sent the config to client and received ACK.
- NOT_SENT
Config is not sent.
- STALE
Management server has sent the config to client but hasn’t received ACK/NACK.
- ERROR
Management server has sent the config to client but received NACK.


*Please fill out all details accurately.
One Way Trip
Return Trip
ORIGIN
*Origin is required
*Origin must be at least 3 characters long
*Enter a valid origin
DESTINATION
*Destination is required
*Destination must be at least 3 characters long
*Enter a valid destination
STOPOVER POINTS
*Stopover point is required
*Stopover must be at least 3 characters long
*Enter a valid Stopover
START DATE
*Date is required
START TIME
*Time is required
RETURN TIME
*Return time is required


Algorithms can save more detailed messaging to log files for later analysis using Log(string message)
. At the end of the backtest a link will be presented to view your results. In live trading a log viewer lets you view log results while the algorithm is running. Because of data vendor limitations price information cannot be recorded in logs.
Because of vendor limitations free users are capped to 10kb of logs per backtest, with a maximum of 3Mb per day. Users with a subscription can generate up to 100kb of logs per backtest.
Log("Additional detailed logging messages");
self.Log("Additional detailed logging messages")
this.Log("Additional detailed logging messages")


14 November 2005
The Ministry of Public Health in Thailand has confirmed a further case of human infection with H5N1 avian influenza. The case is an 18-month-old boy from a suburb of Bangkok. He developed symptoms on 1 November and was hospitalized on 5 November. He remains in good condition.
This is the fourth laboratory-confirmed case in Thailand this year. Since January 2004, Thailand has reported 21 cases, of which 13 were fatal.


TWIN PEAKS: FIRE WALK WITH ME A film review by Chuck Dowling Copyright 1996 Chuck Dowling
NO STARS - C:Sheryl Lee, Ray Wise, Kiefer Sutherland, Kyle MacLachlin, Madchen Amick, Dana Ashbrook, David Bowie, Eric DaRe, Miguel Ferrer, Heather Graham, Chris Issac, Moira Kelly, Peggy Lipton, James Marshall, Jurgen Prochnow, Harry Dean Stanton, Lenny von Dohlen, Grace Zabriskie, Frank Silva, Walter Olkewicz, Al Strobel.
I was a big fan of the ABC television series, and most likely the only one according to the ratings. (Well, my mom watched it too but we both watched it on the same TV so that really doesn't count now does it?) I was also one of the first in line the day the film opened. After watching it, I can safely say that I have never come out of a theater angry, as I did that day. Not disappointed, but angry. The first twenty minutes of the film were quite promising, but after that it's one of the worst films of all time, regardless if you are a fan of the TV show or not.
The TV show was really all about a murder in a small town and the investigation which followed. The show lasted a year and a half, and the final episode ended with a cliffhanger. So when It was announced that a feature film was being made, I was more than overjoyed. Well guess what, the film turns out to be a prequel to the TV show and just shows in detail (and I do mean detail) the events that happened the week before the murder. These are events that we already knew about and were satisfied with the way they were presented. There was no reason to make this film about those events. What writer/ director /creator David Lynch should have done is to continue on with the show from the final episode instead of retreading on familiar material.
Halfway through this mess, the film seems to jump forward in time, but then again not really. Anyway, a reference is made to the cliffhanger ending and you would think that would mean that eventually, before the film is over, that plot line will be resolved. It's not. It's not even really mentioned again. I think Lynch slipped that scene into the film so that the audience wouldn't walk out, that bastard.
Twin Peaks:Fire Walk With Me is loaded with contradictions from the TV show, and unnecessary language, violence, nudity, and sex. The hero of the TV series, cool FBI agent Dale Cooper (MacLachlin) is reduced to a mere cameo. The only good thing about the film is the score. This was easily the worst film from all of 1992. It was even booed when it was shown at the Cannes Film Festival, and deservedly so.
There are many other problems I had with the film, but thay are all plot specific and only people who watched both the show and the film would understand them. If your interested, email me at<EMAIL_ADDRESS>and I'll discuss them with you in detail.
-- Chuck Dowling
Please visit my movie reviews web site at http://users.southeast.net/~chuckd21/ You'll be glad you did.
The review above was posted to the
rec.arts.movies.reviews newsgroup (de.rec.film.kritiken for German reviews).
The Internet Movie Database accepts no responsibility for the contents of the
review and has no editorial control. Unless stated otherwise, the copyright
belongs to the author.
Please direct comments/criticisms of the review to relevant newsgroups.
Broken URLs inthe reviews are the responsibility of the author.
The formatting of the review is likely to differ from the original due
to ASCII to HTML conversion.
Related links: index of all rec.arts.movies.reviews reviews


During my career I wore many hats. From Researcher, working on photonics for telecoms, to Sales Engineer to now Front End Developer. I also lived in Europe, Japan and the US where I currently am with my wife, our cat and our two dachshunds.
If I am not working, I enjoy sailing, travelling or discovering new restaurants with my wife. Feel free to ask me anything you like. Download my resume if you like.


{% extends "basic.html" %} {% block pageTitle %} You’ll have to start again {% endblock %} {% block pageContent %}
We have reset your application because you did not do anything for 30 minutes. We did this to keep your information secure.
If you don’t want to start again, you can return to GOV.UK.


NAVO Registry Publishing Interface - Password Recovery
Using the NAVO registry publishing interface, you can publish new and modify existing VO resources, representing data services, catalogs, archive institutions, and many other astronomical data concepts. This system manages resources hosted at the VO registry at Space Telescope Science Institute. Resources in this registry are accessible by search tools and VO client software througout the IVOA. For more information, check the publishing help page or the main VAO web page.
If you have forgotten your password, you may request a temporary password by contacting the US VOA Community Support page. You can then change it using the form below.
Acknowledging VAO
© 2013 VAO, LLC
© 2013 VAO, LLC


miRNAs rice miRNA sRNAs expression osa-miR-p sequences Arabidopsis mature miRNA*s Osg osa-miR Figure RNA RNAs analysis signatures tissues genes protein Star used expressed using showed (Table corresponding gene seeds (.%) S). novel target genome identified precursors small {border-style Cell abundance microRNAs repetitive antisense levels px;} targets #ffffff;} Plant seed LINK Res. Table addition, different highly loci Acids Nucleic study total Biol. conserved Bartel hybridization including miR miRNAs. microRNA osa-miR, profiles sRNA suggesting candidate chip indicates matched microarray normalized sequence transcripts DNA accumulation cell containing indicated involved low miRNAs, preferentially sequencing tested AGO EST Expression Supplementary abundances annotated embryo functions known level obtained plant plants precursor predicted previously proteins relative siRNAs signature Carrington analyzed biogenesis generated high higher locus mRNAs match probes px; qPCR rRNA represented roles sequences, strands tissues. {font-family Chen Dev. Expressed Identification MPSS Nat. S), Science Wang Zhu accumulated bar cleavage consistent data family font-size matching number numbers osa-MIRp regulation results revealed seeds. similar transcribed ARF Analysis B). Genes Genet. MFE Small auxin clusters copper database described development development. distinct double; duplex generate lower miRNA* miRNA*s. natural osa-miRb patterns polymerase pri-miRNAs ratio repeats reported scale seedlings shown signals silencing suggested tandem transposable transposon unique various (osa-miR, (version A), GeneChip® High Hypothetical Luo Mol. RT-PCR Sunkar TIGR Zhang Zhou annotation border-color border-width calculated candidates check contain correlated correlation detection diverse elegans elements extracted families function guide hybridization. identification identify interspersed leaf library mRNA miRBase mouse multiple new osa-miR) performed phylogenetic positive produce program rRNAs, reaction reference regulate regulating regulatory repeat response resulting rice, secondary seeds, set signal snRNAs solid; specific structures targeted times transcript transcription {font-style {font-weight (Log). -nt A). Acad. AtAGO ClustalW Comparison Further, Genomic Kasschau Lee Natl PCR Physiol. Proc. Rice Sci. USA Xie Xue abundant according account accumulations acid analysis. bold bona cDNA comparing complex courier; criteria detected development, developmental differential directed em; endosperm expressions factors fide fraction functional genomic grouped help hits homeostasis hotspots hypothetical important inhibitor loci, million orientation originate originated osa-MIRq osa-miR-p. osa-miRj paired polyadenylated precursors, prediction present processes produces proposed pt;} real-time recent registered repeat-associated report respectively. reversely sRNAs, sense sequenced sequences. series siRNA sites stable study, tRNAs, tissue tolerance values –).


| 0 |
xxbos = xxmaj laborintus xxup ii ( 2012 recording ) = \n▁\n▁ xxmaj laborintus xxup ii is a 2012 album by xxmaj belgian orchestra xxmaj ictus xxmaj ensemble , vocal group xxmaj nederlands xxmaj kamerkoor and xxmaj american vocalist xxmaj mike xxmaj patton . xxmaj it is a recording of the 1965 work of the same name by xxmaj italian composer xxmaj luciano xxmaj berio , which featured lyrics taken from fellow |
= xxmaj laborintus xxup ii ( 2012 recording ) = \n▁\n▁ xxmaj laborintus xxup ii is a 2012 album by xxmaj belgian orchestra xxmaj ictus xxmaj ensemble , vocal group xxmaj nederlands xxmaj kamerkoor and xxmaj american vocalist xxmaj mike xxmaj patton . xxmaj it is a recording of the 1965 work of the same name by xxmaj italian composer xxmaj luciano xxmaj berio , which featured lyrics taken from fellow xxmaj |
| 1 |
xxmaj hot 100 , and 22 on the r & b / hip - hop xxmaj singles chart . xxmaj it also reached number six on the xxmaj adult xxmaj contemporary chart , while reaching a peak of 39 on the xxmaj adult xxmaj pop xxmaj songs chart . xxmaj in xxmaj canada , the song debuted at number 98 on the xxup rpm xxmaj singles chart , on the xxmaj july |
hot 100 , and 22 on the r & b / hip - hop xxmaj singles chart . xxmaj it also reached number six on the xxmaj adult xxmaj contemporary chart , while reaching a peak of 39 on the xxmaj adult xxmaj pop xxmaj songs chart . xxmaj in xxmaj canada , the song debuted at number 98 on the xxup rpm xxmaj singles chart , on the xxmaj july 22 |
| 2 |
a blacksmith shop . \n▁\n▁ = = = xxmaj establishment = = = \n▁\n▁ xxmaj the dates of the earliest church can not be verified , but a church building may have been constructed at the site of xxmaj old xxmaj pine xxmaj church as early as around 1814 , and possibly as early as 1792 . \n▁ xxmaj on xxmaj september 24 , 1838 , xxmaj william xxunk and his wife |
blacksmith shop . \n▁\n▁ = = = xxmaj establishment = = = \n▁\n▁ xxmaj the dates of the earliest church can not be verified , but a church building may have been constructed at the site of xxmaj old xxmaj pine xxmaj church as early as around 1814 , and possibly as early as 1792 . \n▁ xxmaj on xxmaj september 24 , 1838 , xxmaj william xxunk and his wife , |
| 3 |
featured xxunk ' xxmaj dirty # # # # # # # in the remix for " xxmaj fantasy . " xxmaj they feared the sudden change was completely left field for her music , and worried it would jeopardize the album 's success . xxmaj in an interview with xxmaj entertainment xxmaj weekly , xxmaj carey openly spoke of her issues with xxmaj columbia : " xxmaj everybody was like ' |
xxunk ' xxmaj dirty # # # # # # # in the remix for " xxmaj fantasy . " xxmaj they feared the sudden change was completely left field for her music , and worried it would jeopardize the album 's success . xxmaj in an interview with xxmaj entertainment xxmaj weekly , xxmaj carey openly spoke of her issues with xxmaj columbia : " xxmaj everybody was like ' xxmaj |
| 4 |
. xxmaj on the right - hand wall , an altar dedicated to the xxmaj virgin of the xxmaj confidence is decorated with numerous churrigueresque figurines xxunk away in niches , columns and top pieces . \n▁\n▁ = = = = xxmaj chapel of the xxmaj holy xxmaj angels and xxunk = = = = \n▁\n▁ xxmaj the xxmaj chapel of the xxmaj holy xxmaj angels and xxunk ( xxmaj spanish : |
xxmaj on the right - hand wall , an altar dedicated to the xxmaj virgin of the xxmaj confidence is decorated with numerous churrigueresque figurines xxunk away in niches , columns and top pieces . \n▁\n▁ = = = = xxmaj chapel of the xxmaj holy xxmaj angels and xxunk = = = = \n▁\n▁ xxmaj the xxmaj chapel of the xxmaj holy xxmaj angels and xxunk ( xxmaj spanish : xxmaj |
| 5 |
plot to assassinate him and sent into exile . xxmaj in the novel , the xxmaj general remembers that he had once appointed xxmaj santander to govern xxmaj colombia because he believed him to be an effective and brave soldier . xxmaj he formerly regarded xxmaj santander as " his other self , and perhaps his better self " , but by the time of the events in xxmaj the xxmaj general |
to assassinate him and sent into exile . xxmaj in the novel , the xxmaj general remembers that he had once appointed xxmaj santander to govern xxmaj colombia because he believed him to be an effective and brave soldier . xxmaj he formerly regarded xxmaj santander as " his other self , and perhaps his better self " , but by the time of the events in xxmaj the xxmaj general in |
| 6 |
- xxunk . \n▁ xxwrep 3 xxunk describes the condition : \n▁ xxmaj strange is the madness of those into whom demon foxes enter . xxmaj sometimes they run naked shouting through the streets . xxmaj sometimes they lie down and xxunk at the mouth , and xxunk as a fox xxunk . xxmaj and on some part of the body of the possessed a moving xxunk appears under the skin , |
xxunk . \n▁ xxwrep 3 xxunk describes the condition : \n▁ xxmaj strange is the madness of those into whom demon foxes enter . xxmaj sometimes they run naked shouting through the streets . xxmaj sometimes they lie down and xxunk at the mouth , and xxunk as a fox xxunk . xxmaj and on some part of the body of the possessed a moving xxunk appears under the skin , which |
| 7 |
different as well , and was now one - piece and striped . \n▁\n▁ = = xxmaj return = = \n▁\n▁ xxmaj from her introduction to until 1967 , xxmaj midge was marketed as xxmaj barbie 's original best friend , but no dolls were sold for about 20 years until 1988 , when xxmaj california xxmaj dream xxmaj midge was sold as part of a beach line , which used the |
as well , and was now one - piece and striped . \n▁\n▁ = = xxmaj return = = \n▁\n▁ xxmaj from her introduction to until 1967 , xxmaj midge was marketed as xxmaj barbie 's original best friend , but no dolls were sold for about 20 years until 1988 , when xxmaj california xxmaj dream xxmaj midge was sold as part of a beach line , which used the " |
| 8 |
xxup ii 's world . xxmaj each of the four stages — wasteland , caves , dungeon , and inner xxunk — is a series of interconnected rooms , populated by monsters , traps , and items . xxmaj the game displays one room at a time in a flick - screen manner : as the protagonist leaves a room , the screen is updated to display the next . xxmaj the |
ii 's world . xxmaj each of the four stages — wasteland , caves , dungeon , and inner xxunk — is a series of interconnected rooms , populated by monsters , traps , and items . xxmaj the game displays one room at a time in a flick - screen manner : as the protagonist leaves a room , the screen is updated to display the next . xxmaj the connections |


---
layout: post
title: 2/3
date: '2013-02-03T22:18:00.001-07:00'
author: Jacob .
tags:
modified_time: '2013-02-03T22:18:29.236-07:00'
thumb: https://lh4.googleusercontent.com/-uANcUyFFPNs/UQ9Eo94Jz-I/AAAAAAAAEN0/DgcV0_ZHHvM/s72-c/blogger-image--1340057885.jpg
blogger_id: tag:blogger.com,1999:blog-6400085873105072120.post-3263184350177584232
blogger_orig_url: http://www.svlark.com/2013/02/23.html
---
It was a big tiling day. I really think it makes a big difference in the appeal of the kitchen even without doing anything else.


{{details.high_qual}}
{{details.city}},{{details.state}}
{{details.dob }}
Some text..
Some other text..
Interests
News W3Schools Labels Games Friends Games Friends Food Design Art Photos
Hey!
People are looking at your profile. Find out who.
Upcoming Events:
Holiday
Friday 15:00
Info


The analysis of macromolecular structures often requires a comprehensive definition of atomic neighborhoods. Such a definition can be based on the Voronoi diagram of balls, where each ball represents an atom of some van der Waals radius. Voronota is a software tool for finding all the vertices of the Voronoi diagram of balls. Such vertices correspond to the centers of the empty tangent spheres defined by quadruples of balls. Voronota is especially suitable for processing three-dimensional structures of biological macromolecules such as proteins and RNA.
Since version 1.2 Voronota also uses the Voronoi vertices to construct inter-atom contact surfaces and solvent accessible surfaces. Voronota provides tools to query contacts, generate contacts graphics, compare contacts and evaluate quality of protein structural models using contacts.
Voronota is developed by Kliment Olechnovic (kliment.olechnovic@bti.vu.lt).
Currently there are two expansions of Voronota: Voronota-JS and Voronota-GL.
The expansions need to be built separately in their subdirectories. Alternatively, they can be built by appending -DEXPANSION_JS=ON
and -DEXPANSION_GL=ON
to the CMake command call.
The expansions have separate separate dedicated documentation pages.
Voronota-JS expansion is located in the 'expansion_js' subdirectory of the Voronota package.
Voronota-JS provides a way to write JavaScript scripts for the comprehensive analysis of macromolecular structures, including the Voronoi tesselation-based analysis. Currently, the Voronota-JS package contains several executables:
Voronota-GL expansion is located in the 'expansion_gl' subdirectory of the Voronota package
Voronota-GL is a visual tool for the comprehensive interactive analysis of macromolecular structures, including the Voronoi tesselation-based analysis.
Download the latest archive from the official downloads page: https://github.com/kliment-olechnovic/voronota/releases.
The archive contains ready-to-use statically compiled 'voronota' program for 64 bit Linux systems. This executable can be rebuilt from the provided source code to work on any modern Linux, macOS or Windows operating systems.
On Ubuntu 18.04 and newer it is possible to install Voronota using 'apt' command:
sudo apt install voronota
On Windows 10 operating system the easiest way to run Voronota is to use Windows Subsystem for Linux (WSL).
Voronota has no required external dependencies, only a standard-compliant C++ compiler is needed to build it.
You can build using CMake for makefile generation. Starting in the directory containing "CMakeLists.txt" file, run the sequence of commands:
cmake ./
make
Alternatively, to keep files more organized, CMake can be run in a separate "build" directory:
mkdir build
cd build
cmake ../
make
cp ./voronota ../voronota
For example, "voronota" executable can be built from the sources in "src" directory using GNU C++ compiler:
g++ -O3 -o voronota $(find ./src/ -name '*.cpp')
To allow the usage of OpenMP when calling the "calculate-vertices-in-parallel" command, the "-fopenmp" flag needs to be set when building.
When building using C++ compiler directly, just add "-fopenmp":
g++ -O3 -fopenmp -o voronota $(find ./src/ -name '*.cpp')
When using CMake, set the CMAKE_CXX_FLAGS variable:
cmake -DCMAKE_CXX_FLAGS="-fopenmp" ./
make
To allow the usage of MPI when calling the "calculate-vertices-in-parallel" command, you can use mpic++ compiler wrapper and define "ENABLE_MPI" macro when buiding:
mpic++ -O3 -DENABLE_MPI -o voronota ./$(find ./src/ -name '*.cpp')
Voronota can be built with either modern C++ compilers or pre-C++11 compilers that support C++ Technical Report 1 (TR1) features. The voronota code has preprocessor-based checks to find out if C++ TR1 namespace is available and needs to be used. If compilation fails, it may mean that these checks failed. To troubleshoot this, try setting the value of the "USE_TR1" macro to 0 (to not use TR1 and to rely on C++11 standard) or 1 (to use TR1) when compiling, for example:
g++ -O3 -DUSE_TR1=1 -o voronota $(find ./src/ -name '*.cpp')
or
g++ -O3 -std=c++11 -DUSE_TR1=0 -o voronota $(find ./src/ -name '*.cpp')
Here is a basic example of computing Voronoi vertices for a structure in a PDB file:
./voronota get-balls-from-atoms-file < input.pdb > balls.txt
./voronota calculate-vertices < balls.txt > vertices.txt
The first command reads a PDB file "input.pdb" and outputs a file "balls.txt" that contains balls corresponding to the atoms in "input.pdb" (by default, Voronota ignores all heteroatoms and all hydrogen atoms when reading PDB files: this behavior can be altered using command-line options). The second command reads "balls.txt" and outputs a file "vertices.txt" that contains a quadruples and empty tangent spheres that correspond to the vertices of the Voronoi diagram of the input balls. The formats of "balls.txt" and "vertices.txt" are described below.
In "balls.txt" the line format is "x y z r # comments". The first four values (x, y, z, r) are atomic ball coordinates and radius. Comments are not needed for further calculations, they are to assist human readers. For example, below is a part of some possible "balls.txt":
28.888 9.409 52.301 1.7 # 1 A 2 SER N
27.638 10.125 52.516 1.9 # 2 A 2 SER CA
26.499 9.639 51.644 1.75 # 3 A 2 SER C
26.606 8.656 50.915 1.49 # 4 A 2 SER O
27.783 11.635 52.378 1.91 # 5 A 2 SER CB
27.69 12.033 51.012 1.54 # 6 A 2 SER OG
In "vertices.txt" the line format is "q1 q2 q3 q4 x y z r". The first four numbers (q1, q2, q3, q4) are numbers of atomic records in "balls.txt", starting from 0. The remaining four values (x, y, z, r) are the coordinates and the radius of an empty tangent sphere of the quadruple of atoms. For example, below is a part of some possible "vertices.txt":
0 1 2 3 27.761 8.691 51.553 -0.169
0 1 2 23 28.275 9.804 50.131 0.588
0 1 3 1438 24.793 -3.225 60.761 14.047
0 1 4 5 28.785 10.604 50.721 0.283
0 1 4 1453 30.018 10.901 55.386 1.908
0 1 5 23 28.544 10.254 50.194 0.595
Taking the "balls.txt" file described in the previous section, here is a basic example of computing inter-atom contacts:
./voronota calculate-contacts < balls.txt > contacts.txt
In "contacts.txt" file the line format is "b1 b2 area". The first two numbers (b1 and b2) are numbers of atomic records in "balls.txt", starting from 0. If b1 does not equal b2, then the 'area' value is the area of contact between atoms b1 and b2. If b1 equals b2, then the 'area' value is the solvent-accessible area of atom b1. For example, below is a part of some possible "contacts.txt":
0 0 35.440
0 1 15.908
0 2 0.167
0 3 7.025
0 4 7.021
0 5 0.624
0 23 2.849
0 25 0.008
0 26 11.323
0 1454 0.021
1 1 16.448
1 2 11.608
1 3 0.327
1 4 14.170
1 5 0.820
1 6 3.902
1 23 0.081
2 2 3.591
2 3 11.714
2 4 0.305
2 5 2.019
Here is a basic example of computing annotated inter-atom contacts:
./voronota get-balls-from-atoms-file --annotated < input.pdb > annotated_balls.txt
./voronota calculate-contacts --annotated < annotated_balls.txt > annotated_contacts.txt
In "annotated_contacts.txt" the line format is "annotation1 annotation2 area distance tags adjuncts [graphics]". The strings 'annotation1' and 'annotation2' describe contacting atoms, the 'area' value is the area of contact between the two atoms, the 'distance' value is the distance between the centers of the contacting atoms. If 'annotation2' contains string "solvent", then the 'area' value is the solvent-accessible area of the atom described by 'annotation1'. The remaining part of the line is used by Voronota querying and drawing commands that are not covered in this section.
Each atomic descriptor in the above text can be transformed into a space-separated list (chainID resSeq iCode serial altLoc resName name) using "voronota expand-descriptors" command:
cat annotated_contacts.txt | voronota expand-descriptors | column -t > expanded_table_of_contacts.txt
Below is a part of some possible "expanded_table_of_contacts.txt":
A 2 . 1 . SER N A 2 . 2 . SER CA 15.908 1.456 . .
A 2 . 1 . SER N A 2 . 3 . SER C 0.167 2.488 . .
A 2 . 1 . SER N A 2 . 4 . SER O 7.025 2.774 . .
A 2 . 1 . SER N A 2 . 5 . SER CB 7.021 2.486 . .
A 2 . 1 . SER N A 2 . 6 . SER OG 0.624 3.159 . .
A 2 . 1 . SER N A 5 . 24 . GLU CB 2.849 4.628 . .
A 2 . 1 . SER N A 5 . 26 . GLU CD 0.008 4.792 . .
A 2 . 1 . SER N A 5 . 27 . GLU OE1 11.323 3.932 . .
A 2 . 1 . SER N A 194 . 1501 . LEU CD2 0.021 5.465 . .
A 2 . 1 .
A 2 . 2 . SER CA A 2 . 3 . SER C 11.608 1.514 . .
A 2 . 2 . SER CA A 2 . 4 . SER O 0.327 2.405 . .
A 2 . 2 . SER CA A 2 . 5 . SER CB 14.170 1.523 . .
A 2 . 2 . SER CA A 2 . 6 . SER OG 0.820 2.430 . .
A 2 . 2 . SER CA A 3 . 7 . LYS N 3.902 2.371 . .
A 2 . 2 . SER CA A 5 . 24 . GLU CB 0.081 4.954 . .
A 2 . 2 .
The "voronota query-contacts" command can be used to query and manipulate computed annotated contacts. For example, below is the command that selects contacts that probably correspond to salt bridges:
cat annotated_contacts.txt | voronota query-contacts --match-first 'R<ASP,GLU>&A<OD1,OD2,OE1,OE2,OXT>' --match-second 'R<ARG,HIS,LYS>&A<NH1,NH2,ND1,NE2,NZ>' --match-max-dist 4.0
The support/generate-arguments-for-query-contacts.html file in the Voronota package provides a graphical interface for generating sets of arguments for the "voronota query-contacts" command: it serves as an interactive documentation. A similar interface for the "voronota query-balls" command is provided by the support/generate-arguments-for-query-balls.html file.
The list of all available Voronota commands is displayed when executing Voronota without any parameters.
Command help is shown when "--help" command line option is present, for example:
./voronota calculate-vertices --help
Using "--help" option without specific command results in printing help for all commands:
./voronota --help
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--annotated flag to enable annotated mode
--include-heteroatoms flag to include heteroatoms
--include-hydrogens flag to include hydrogen atoms
--multimodel-chains flag to read multiple models in PDB format and rename chains accordingly
--input-format string input format, variants are: 'pdb' (default), 'mmcif', 'detect'
--radii-file string path to radii configuration file
--default-radius number default atomic radius
--only-default-radius flag to make all radii equal to the default radius
--hull-offset number positive offset distance enables adding artificial hull balls
--help flag to print usage help to stdout and exit
file in PDB or mmCIF format
list of balls
default mode line format: 'x y z r # atomSerial chainID resSeq resName atomName altLoc iCode'
annotated mode line format: 'annotation x y z r tags adjuncts'
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--print-log flag to print log of calculations
--exclude-hidden-balls flag to exclude hidden input balls
--include-surplus-quadruples flag to include surplus quadruples
--link flag to output links between vertices
--init-radius-for-BSH number initial radius for bounding sphere hierarchy
--check flag to slowly check the resulting vertices (used only for testing)
--help flag to print usage help to stdout and exit
list of balls (line format: 'x y z r')
list of Voronoi vertices, i.e. quadruples with tangent spheres (line format: 'q1 q2 q3 q4 x y z r')
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--method string * parallelization method name, variants are: 'simulated'
--parts number * number of parts for splitting, must be power of 2
--print-log flag to print log of calculations
--include-surplus-quadruples flag to include surplus quadruples
--link flag to output links between vertices
--init-radius-for-BSH number initial radius for bounding sphere hierarchy
--help flag to print usage help to stdout and exit
list of balls (line format: 'x y z r')
list of Voronoi vertices, i.e. quadruples with tangent spheres (line format: 'q1 q2 q3 q4 x y z r')
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--annotated flag to enable annotated mode
--probe number probe radius
--exclude-hidden-balls flag to exclude hidden input balls
--step number curve step length
--projections number curve optimization depth
--sih-depth number spherical surface optimization depth
--add-mirrored flag to add mirrored contacts to non-annnotated output
--draw flag to output graphics for annotated contacts
--tag-centrality flag to tag contacts centrality
--tag-peripherial flag to tag peripherial contacts
--old-contacts-output string file path to output spherical contacts
--volumes-output string file path to output constrained cells volumes
--help flag to print usage help to stdout and exit
list of balls
default mode line format: 'x y z r'
annotated mode line format: 'annotation x y z r tags adjuncts'
list of contacts
default mode line format: 'b1 b2 area'
annotated mode line format: 'annotation1 annotation2 area distance tags adjuncts [graphics]'
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--match string selection
--match-not string negative selection
--match-tags string tags to match
--match-tags-not string tags to not match
--match-adjuncts string adjuncts intervals to match
--match-adjuncts-not string adjuncts intervals to not match
--match-external-annotations string file path to input matchable annotations
--invert flag to invert selection
--whole-residues flag to select whole residues
--drop-atom-serials flag to drop atom serial numbers from input
--drop-altloc-indicators flag to drop alternate location indicators from input
--drop-tags flag to drop all tags from input
--drop-adjuncts flag to drop all adjuncts from input
--set-tags string set tags instead of filtering
--set-dssp-info string file path to input DSSP file
--set-adjuncts string set adjuncts instead of filtering
--set-external-adjuncts string file path to input external adjuncts
--set-external-adjuncts-name string name for external adjuncts
--rename-chains flag to rename input chains to be in interval from 'A' to 'Z'
--guess-chain-names flag to assign input chain names based on residue numbering
--renumber-from-adjunct string adjunct name to use for input residue renumbering
--renumber-positively flag to increment residue numbers to make them positive
--reset-serials flag to reset atom serial numbers
--set-seq-pos-adjunct flag to set normalized sequence position adjunct
--set-ref-seq-num-adjunct string file path to input reference sequence
--ref-seq-alignment string file path to output alignment with reference
--seq-output string file path to output query result sequence string
--chains-summary-output string file path to output chains summary
--chains-seq-identity number sequence identity threshold for chains summary, default is 0.9
--help flag to print usage help to stdout and exit
list of balls (line format: 'annotation x y z r tags adjuncts')
list of balls (line format: 'annotation x y z r tags adjuncts')
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--match-first string selection for first contacting group
--match-first-not string negative selection for first contacting group
--match-second string selection for second contacting group
--match-second-not string negative selection for second contacting group
--match-min-seq-sep number minimum residue sequence separation
--match-max-seq-sep number maximum residue sequence separation
--match-min-area number minimum contact area
--match-max-area number maximum contact area
--match-min-dist number minimum distance
--match-max-dist number maximum distance
--match-tags string tags to match
--match-tags-not string tags to not match
--match-adjuncts string adjuncts intervals to match
--match-adjuncts-not string adjuncts intervals to not match
--match-external-first string file path to input matchable annotations
--match-external-second string file path to input matchable annotations
--match-external-pairs string file path to input matchable annotation pairs
--no-solvent flag to not include solvent accessible areas
--ignore-dist-for-solvent flag to ignore distance for solvent contacts
--ignore-seq-sep-for-solvent flag to ignore sequence separation for solvent contacts
--no-same-chain flag to not include same chain contacts
--no-poly-bonds flag to not include peptide and nucleic polymerization bonds
--invert flag to invert selection
--drop-tags flag to drop all tags from input
--drop-adjuncts flag to drop all adjuncts from input
--set-tags string set tags instead of filtering
--set-hbplus-tags string file path to input HBPLUS file
--set-distance-bins-tags string list of distance thresholds
--inter-residue-hbplus-tags flag to set inter-residue H-bond tags
--set-adjuncts string set adjuncts instead of filtering
--set-external-adjuncts string file path to input external adjuncts
--set-external-adjuncts-name string name for external adjuncts
--set-external-means string file path to input external values for averaging
--set-external-means-name string name for external means
--renaming-map string file path to input atoms renaming map
--inter-residue flag to convert input to inter-residue contacts
--inter-residue-after flag to convert output to inter-residue contacts
--summing-exceptions string file path to input inter-residue summing exceptions annotations
--summarize flag to output only summary of matched contacts
--summarize-by-first flag to output only summary of matched contacts by first identifier
--preserve-graphics flag to preserve graphics in output
--help flag to print usage help to stdout and exit
list of contacts (line format: 'annotation1 annotation2 area distance tags adjuncts [graphics]')
list of contacts (line format: 'annotation1 annotation2 area distance tags adjuncts [graphics]')
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--drawing-for-pymol string file path to output drawing as pymol script
--drawing-for-jmol string file path to output drawing as jmol script
--drawing-for-scenejs string file path to output drawing as scenejs script
--drawing-for-chimera string file path to output drawing as chimera bild script
--drawing-name string graphics object name for drawing output
--default-color string default color for drawing output, in hex format, white is 0xFFFFFF
--adjunct-gradient string adjunct name to use for gradient-based coloring
--adjunct-gradient-blue number blue adjunct gradient value
--adjunct-gradient-red number red adjunct gradient value
--adjuncts-rgb flag to use RGB color values from adjuncts
--random-colors flag to use random color for each drawn contact
--alpha number alpha opacity value for drawing output
--use-labels flag to use labels in drawing if possible
--help flag to print usage help to stdout and exit
list of contacts (line format: 'annotation1 annotation2 area distance tags adjuncts graphics')
list of contacts (line format: 'annotation1 annotation2 area distance tags adjuncts graphics')
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--potential-file string * file path to input potential values
--ignorable-max-seq-sep number maximum residue sequence separation for ignorable contacts
--inter-atom-scores-file string file path to output inter-atom scores
--atom-scores-file string file path to output atom scores
--depth number neighborhood normalization depth
--help flag to print usage help to stdout and exit
list of contacts (line format: 'annotation1 annotation2 conditions area')
global scores
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--default-mean number default mean parameter
--default-sd number default standard deviation parameter
--means-and-sds-file string file path to input atomic mean and sd parameters
--mean-shift number mean shift in standard deviations
--external-weights-file string file path to input external weights for global scoring
--smoothing-window number window to smooth residue quality scores along sequence
--atom-scores-file string file path to output atom scores
--residue-scores-file string file path to output residue scores
--help flag to print usage help to stdout and exit
list of atom energy descriptors
weighted average local score
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--input-file-list flag to read file list from stdin
--input-contributions string file path to input contact types contributions
--input-fixed-types string file path to input fixed types
--input-seq-pairs-stats string file path to input sequence pairings statistics
--potential-file string file path to output potential values
--probabilities-file string file path to output observed and expected probabilities
--single-areas-file string file path to output single type total areas
--contributions-file string file path to output contact types contributions
--multiply-areas number coefficient to multiply output areas
--toggling-list string list of toggling subtags
--help flag to print usage help to stdout and exit
list of contacts (line format: 'annotation1 annotation2 conditions area')
line of contact type area summaries (line format: 'annotation1 annotation2 conditions area')
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--target-contacts-file string * file path to input target contacts
--inter-atom-scores-file string file path to output inter-atom scores
--inter-residue-scores-file string file path to output inter-residue scores
--atom-scores-file string file path to output atom scores
--residue-scores-file string file path to output residue scores
--depth number local neighborhood depth
--smoothing-window number window to smooth residue scores along sequence
--smoothed-scores-file string file path to output smoothed residue scores
--ignore-residue-names flag to consider just residue numbers and ignore residue names
--residue-level-only flag to output only residue-level results
--detailed-output flag to enable detailed output
--chains-renaming-file string file path to input chains renaming
--remap-chains flag to calculate optimal chains remapping
--remap-chains-log flag output remapping progress to stderr
--remapped-chains-file string file path to output calculated chains remapping
--help flag to print usage help to stdout and exit
list of model contacts (line format: 'annotation1 annotation2 area')
global scores (atom-level and residue-level)
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--pdb-output string file path to output query result in PDB format
--pdb-output-b-factor string name of adjunct to output as B-factor in PDB format
--pdb-output-template string file path to input template for B-factor insertions
--add-chain-terminators flag to add TER lines after chains
--help flag to print usage help to stdout and exit
list of balls (line format: 'annotation x y z r tags adjuncts')
list of balls (line format: 'annotation x y z r tags adjuncts')
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--clash-distance number clash distance threshold in angstroms, default is 3.0
--min-seq-sep number minimum residue sequence separation, default is 2
--init-radius-for-BSH number initial radius for bounding sphere hierarchy
--help flag to print usage help to stdout and exit
list of balls (line format: 'annotation x y z r')
list of clashes (line format: 'annotation1 annotation2 distance min-distance-between-balls')
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--interactive flag for interactive mode
--exit-on-first-failure flag to terminate script when a command fails
--max-unfolding number maximum level of output unfolding, default is 6
--help flag to print usage help to stdout and exit
script as plain text
output of script execution
Name Type Description
------------------------------- ------ ---- ------------------------------------------------------------------------
--help flag to print usage help to stdout and exit
any text containing atom descriptors
text with each atom descriptor expanded to 'chainID resSeq iCode serial altLoc resName name'
'voronota-voromqa' script is an implementation of VoroMQA (Voronoi diagram-based Model Quality Assessment) method using Voronota. The script interface is presented below:
Basic options:
--input | -i string input structure file in PDB or mmCIF format
--input-filter-query string input atoms filtering query parameters
--output-atom-scores string output text file with atom scores
--output-atom-scores-pdb string output PDB file with atom scores as B-factors
--output-residue-scores string output text file with residue scores
--output-residue-scores-pdb string output PDB file with residue scores as B-factors
--output-residue-scores-plot string output PNG image file with residue scores plot, requires R
--help | -h flag to display help message and exit
Advanced options:
--cache-dir string path to cache directory
--smoothing-window number residue scores smoothing window size, default is 5
--atoms-query string atoms query parameters to define selection
--contacts-query string contacts query parameters to define selection
--output-selected-scores string output text file with selected atom scores
--reference-sequence string sequence file or string for residue renumbering
--output-sequence-alignment string output text file with sequence alignment
--print-header flag to print output header
--multiple-models flag to handle multiple models in PDB file
--score-inter-chain flag to output inter-chain interface scores
--list-all-options flag to display list of all command line options and exit
Standard output (one line):
{input file path} {global score} {number of residues} {number of atoms} [ {selection score} {number of selected atoms} ]
All options of 'voronota-voromqa' script, in alphabetical order:
--add-hydrogens string command to add hydrogens
--atoms-query string atoms query parameters to define selection
--cache-dir string path to cache directory
--contacts-query string contacts query parameters to define selection
--energy-input-potential string path to custom potential file
--energy-input-statistics string path to custom energy statistics file
--energy-mode string energy mode name
--help flag to display help message and exit
--highlight-selection-in-plot flag to highlight selection in plot
--input-filter-query string input atoms filtering query parameters
--input-is-list flag to treat input as a list of files
--input-is-structure flag to treat input as a PDB file
--input string input structure file in PDB format
--more-logging flag to enable more logging
--multiple-energy-modes string list of energy modes
--multiple-models flag to handle multiple models in PDB file
--mutation-goal string three-letter residue code
--mutation-query string atoms query parameters to define residues to mutate
--neglect-SAS flag to discard solvent-accessible surface
--no-multiple-energy-modes flag to not use multiple energy modes
--no-split-into-models flag to not split input into separate models
--no-use-slurm flag to not use Slurm
--options-for-calculating-contacts string custom options for calculating contacts
--output-atom-depth-values string output file with atom depth values
--output-atom-energies string output file with atom energy values
--output-atom-scores-pdb string output PDB file with atom scores as B-factors
--output-atom-scores string output text file with atom scores
--output-balls string output file with balls
--output-contacts-map-svg string output file with contact map image
--output-contacts string output file with contacts
--output-cutting-suggestions string output file with chain cutting suggestions
--output-directory-for-global-scores string output directory for global scores
--output-residue-scores-for-CAMEO string output file with output for CAMEO
--output-residue-scores-like-for-CASP string output file with output like for CASP
--output-residue-scores-pdb string output PDB file with residue scores as B-factors
--output-residue-scores-plot string output PNG image file with residue scores plot, requires R
--output-residue-scores string output text file with residue scores
--output-scores-for-CASP-log string output file with logs generated in CASP mode
--output-scores-for-CASP-pdb string output file with structure generated in CASP mode
--output-scores-for-CASP string output file with scores generated in CASP mode
--output-screenshot string output file with screenshot
--output-selected-scores string output text file with selected atom scores
--output-selected-scores-by-residue string output text file with selected scores summed by residue
--output-sequence-alignment string output text file with sequence alignment
--output-summary-for-potential string output file with statistics of contact
--print-clash-score-of-contacts-selection flag to print clash score of contacts selection
--print-energy-of-contacts-selection flag to print energy of contacts selection
--print-header flag to print output header
--print-horizontally flag to print output horizontally
--print-vertically flag to print output vertically
--probe-radius number probe radius for defining contacts
--processors number maximum number of processors to use
--rebuild-sidechains string command to rebuild side-chains
--reference-sequence string sequence file or string for residue renumbering
--reinterpret-SAS flag to interpret solvent as hydrophobic atoms
--sbatch-parameters string parameters for sbatch when using slurm
--score-inter-chain flag to output inter-chain interface scores
--screenshot-background string screenshot background color
--screenshot-height number screenshot image height
--screenshot-width number screenshot image width
--small-plot flag to generate smaller residue scores plot
--smoothing-window number residue scores smoothing window size, default is 5
--split-into-models string path to directory for storing extracted models
--strip-rotamers flag to remove sidechains
--surface-craving-atoms-energies-output string output text file with surface frustration results
--surface-craving-atoms-energies-pdb string output PDB file with surface frustration results
--surface-craving-atoms-output-pdb string output PDB file with atom scores as B-factors
--surface-craving-atoms-output string output text file with atom scores
--surface-craving-depth-value number depth for surface frustration calculation, default is 3
--surface-craving-residues-output-pdb string output PDB file with residue scores as B-factors
--surface-craving-residues-output string output text file with residue scores
--w-surface-craving-residues-output-pdb string output PDB file with residue scores as B-factors
--w-surface-craving-residues-output string output text file with residue scores
--tag-peripheral-contacts flag to tag peripheral contacts
--unteaching-dir string path to directory with potential-defining files
--use-slurm string path to directory to use for Slurm logs
'voronota-cadscore' script is an implementation of CAD-score (Contact Area Difference score) method using Voronota. The script interface is presented below:
Basic options:
--input-target | -t string * input target structure file in PDB or mmCIF format
--input-model | -m string * input model structure file in PDB format
--input-filter-query string input atoms filtering query parameters
--filter-model-by-target flag to filter model residues by the set of target residue IDs
--output-residue-scores string output text file with residue scores
--output-residue-scores-pdb-t string output target PDB file with residue scores as B-factors
--output-residue-scores-pdb-m string output model PDB file with residue scores as B-factors
--smoothing-window number residue scores smoothing window size, default is 0
--contacts-query string contacts query parameters
--contacts-query-inter-chain flag to consider only inter-chain contacts
--contacts-query-by-code string contacts query code, possible codes are AA, AS, SS, AM, MM, MS
--use-all-query-codes flag to output global scores for all query codes, one line per code
--cache-dir string path to cache directory
--output-header flag to output header before result line
--help | -h flag to display help message and exit
Advanced options:
--ignore-residue-names flag to consider just residue numbers and ignore residue names
--enable-site-based-scoring flag to enable site-based scoring
--multiple-models flag to handle multiple models in PDB file as an assembly
--input-model-chains-renaming input text file with renaming rules for chains
--remap-chains flag to automatically rearrange chain names for higher scores
--remap-chains-output string output file with chain names rearrangement
--neighborhood-depth number number of layers to for per-residue scoring, default is 0
--old-regime flag to calculate areas as in pre-Voronota CAD-score
Standard output (one line):
{target file path} {model file path} {query code} {number of residues} {global score} {target total area} {corresponding model total area}
[ {site-based number of residues} {site-based global score} {site-based target total area} {corresponding site-based model total area} ]
'voronota-contacts' script provides a way for calculating and querying interatomic contacts with just one command (without the need to construct a pipeline from 'voronota' calls).
Basic options:
--input | -i string * input structure file in PDB or mmCIF format
--input-filter-query string input atoms filtering query parameters
--contacts-query string contacts query parameters
--contacts-query-additional string additional, preceeding query parameters, default is '--match-min-seq-sep 1'
--cache-dir string path to cache directory
--sum-at-end flag to print sum of areas as the last line in output
--tsv-output flag to output table in tab-separated values format with header
--help | -h flag to display help message and exit
Advanced options:
--output-drawing string output file with drawing script for PyMol
--drawing-parameters string drawing parameters
--wireframe-drawing flag to draw wireframe representation of contacts
--multiple-models flag to handle multiple models in PDB file
--use-hbplus flag to run 'hbplus' to tag H-bonds
Standard output (multiple lines):
{contacting atom} {contacting atom} {contact area} {distance between atoms centers} {tags} {adjunct values}
'voronota-volumes' script provides a way for calculating and querying atomic volumes with just one command (without the need to construct a pipeline from 'voronota' calls).
Basic options:
--input | -i string * input structure file in PDB or mmCIF format
--input-filter-query string input atoms filtering query parameters
--cache-dir string path to cache directory
--sum-at-end flag to print sum of areas as the last line in output
--help | -h flag to display help message and exit
Advanced options:
--atoms-query string atoms query parameters
--per-residue flag to output per-residue results
--multiple-models flag to handle multiple models in PDB file
Standard output (multiple lines):
{name} {volume}
'voronota-pocket' script provides a way for identifying and describing pockets, cavities and channels using the Voronoi tessellation vertices.
Options:
--input | -i string * input structure file in PDB or mmCIF format
--input-filter-query string input atoms filtering query, default is '--match-tags-not het'
--probe-min number scanning probe radius minimum, default is 2.0
--probe-max number scanning probe radius maximum, default is 30.0
--buriedness-core number buriedness minimum for pocket start, default is 0.7
--buriedness-rim number buriedness maximum for pocket end, default is 0.4
--subpockets number number of sorted subpockets to include, default is 999999
--tangent-leeway number tangent sphere radius expansion for atom checks, default is 0.5
--tangent-radius-min number tanget sphere radius minimum, default is 1.4
--tetrahedron-edge-max number tetrahedron edge maximum, default is 999999
--voxelization-factor number voxelization factor, default is 1.0
--output-atoms string file to output analyzed atoms with annotations
--output-buriedness-pdb string file to output PDB file with buriedness in b-factors
--output-pocketness-pdb string file to output PDB file with pocketness in b-factors
--output-vertices string file to output Voronoi vertices of pocket
--output-voxels-pdb string file to output voxels as PDB file
--draw-tetrahedrons string file to output PyMol script for drawing pocket tetrahedrons
--draw-spheres string file to output PyMol script for drawing pocket spheres
--output-log string file to output detailed log on calculations
--output-header flag to output header before result line
--help | -h flag to display help message and exit
Standard output (one line):
{input file} {max buriedness} {all atoms} {all vertices} {pocket atoms} {pocket vertices} {volume of pocket tetrahedrons}
Suggested parameters
for pocket analysis:
--probe-min 2 --probe-max 30 --buriedness-core 0.7 --buriedness-rim 0.4
for large channel analysis:
--probe-min 5 --probe-max 30 --buriedness-core 0.8 --buriedness-rim 0.6
Other suggestions:
For large pockets or channels the spheres drawing option may
produce very large files (too large for PyMol).
'voronota-membrane' script provides a way for fitting a membrane for a protein struture using VoroMQA-based surface frustration analysis.
Options:
--input | -i string * input structure file in PDB or mmCIF format
--input-filter-query string input atoms filtering query, default is ''
--membrane-width number membrane width, default is 30.0
--output-atoms string file to output analyzed atoms with annotations
--output-membraneness-pdb string file to output PDB file with membraneness in b-factors
--output-log string file to output detailed log on calculations
--output-header flag to output header before result line
--help | -h flag to display help message and exit
Standard output (one line):
{input file} {membrane fitting score} {direction x} {direction y} {direction z} {center projection}


Duration:
ms
Transition-Duration:
ms
Animation-Duration:
ms
Timer:
Transitions:
Animations:
Apply
Prev
Next
Clear Marker


I've been experimenting with adding a two row display to an Arduino Uno R3 to show the power being currently diverted and the total so far for the day. Using a simple press button the display will show the total for yesterday and the running total for today.
The display I'm using is the Sainsmart 2 row x 16 character display with a few push buttons for input. A minor modification makes the 'Select' switch suitable for a digital input on the A0 input.
The display uses 6 digital pins some of which clash with the original pin allocation in Robin's code so these have been changed and are commented in the source code.
The mode select is now digital pin 2 and the triac drive is from digital pin 3
One restriction of the first release is that the dump load must be greater than the maximum PV output - this suits my installation which is 2.3kWp and a standard 3kW immersion heater.
Power measurement is performed by counting cycles where the triac is on and the bucket is not overflowing. The power rating of the dump load needs to be entered in the code (currently 2750W) and conversion factors are used to display current power in kW and total energy dumped in kWh.
The way the Anti-flicker works does cause the current power to fluctuate unless it is heavily averaged. I've use a rolling average scheme to give a 1 second update rate of the latest 20 second average which to me gives an acceptable performance.
A couple of photos show the default display and the optional comparison between the total yesterday with todays running total.
Adding Power display to Robin's PV diverter
Submitted by 9fingers on Fri, 05/04/2013 - 20:15I've been experimenting with adding a two row display to an Arduino Uno R3 to show the power being currently diverted and the total so far for the day. Using a simple press button the display will show the total for yesterday and the running total for today.
The display I'm using is the Sainsmart 2 row x 16 character display with a few push buttons for input. A minor modification makes the 'Select' switch suitable for a digital input on the A0 input.
The display uses 6 digital pins some of which clash with the original pin allocation in Robin's code so these have been changed and are commented in the source code.
The mode select is now digital pin 2 and the triac drive is from digital pin 3
One restriction of the first release is that the dump load must be greater than the maximum PV output - this suits my installation which is 2.3kWp and a standard 3kW immersion heater.
Power measurement is performed by counting cycles where the triac is on and the bucket is not overflowing. The power rating of the dump load needs to be entered in the code (currently 2750W) and conversion factors are used to display current power in kW and total energy dumped in kWh.
The way the Anti-flicker works does cause the current power to fluctuate unless it is heavily averaged. I've use a rolling average scheme to give a 1 second update rate of the latest 20 second average which to me gives an acceptable performance.
A couple of photos show the default display and the optional comparison between the total yesterday with todays running total.


Enter patients hospital identification number here to begin
Continue
Body Tag
*
Place Of Death
Date Of Death
Input Format: mm/dd/yyyy
First Name
Other Names
Date of Birth
Input Format: mm/dd/yyyy
Gender
-Select-
Male
Female
Body Depositor Contact Information Section
First Name
Other Names
Address
Relationship
-Select-
Spouse
Father
Mother
Sister
Brother
Uncle
Aunt
Grandparent
Niece
Nephew
Phone Number
Family Member/Next of Kin Contact Information Section
First Name
Other Names
Address
Relationship
-Select-
Spouse
Father
Mother
Sister
Brother
Uncle
Aunt
Grandparent
Niece
Nephew
Phone Number
Submit


75-year-old woman dies in single-vehicle collision in Down
The woman was travelling on the A1 southbound when the collision occurred.
by Stephen McDermottA 75-YEAR-OLD woman has been killed in single-vehicle road collision in Co Down.
The woman was travelling on the A1 southbound this afternoon, when the collision happened between Banbridge and Dromore shortly before 12:45pm.
The PSNI are appealing to anyone who was travelling on the motorway in the area this afternoon and who may have seen a red Citroen C1, which the woman was travelling in, before the collision.
They are also urging anyone with dash-cam footage who could assist with their inquiries to contact them.
The stretch of motorway between Banbridge and Dromore remains closed in both directions while police continue to investigate the circumstances of the collision.


Sports Education Science and technologies Environment