Experiment types in ArrayExpress
These are the different experiment types that are currently reposited in ArrayExpress.
| Experiment Type | Definition (EFO term accession) | Example |
|---|---|---|
| 4C | EFO_0007690 | E-MTAB-2180 |
| antigen profiling | EFO_0000747 | E-MTAB-3606 |
| ATAC-seq | EFO_0007045 | E-MTAB-3972 |
| Bisulfite-seq | EFO_0003753 | E-MTAB-1042 |
| Capture-C | EFO_0007691 | E-MTAB-4845 |
| ChIP-chip by array | EFO_0002760 | E-MTAB-2804 |
| ChIP-chip by SNP array | EFO_0002764 | E-GEOD-22306 |
| ChIP-chip by tiling array | EFO_0002762 | E-MTAB-1402 |
| ChIP-seq | EFO_0002692 | E-MTAB-3631 |
| CLIP-seq | EFO_0003143 | E-MTAB-1371 |
| comparative genomic hybridization by array | EFO_0000749 | E-MTAB-2293 |
| DNA-seq | EFO_0002693 | E-MTAB-3109 |
| FAIRE-seq | EFO_0004428 | E-MTAB-3199 |
| genotyping by array | EFO_0002767 | E-MTAB-3729 |
| genotyping by high throughput sequencing | EFO_0002771 | E-MTAB-1794 |
| GRO-seq | EFO_0005227 | E-MTAB-3626 |
| Hi-C | EFO_0007693 | E-MTAB-2414 |
| MeDIP-seq | EFO_0003749 | E-MTAB-3051 |
| metabolomic profiling | EFO_0000752 | E-TABM-290 |
| methylation profiling by array | EFO_0002759 | E-MTAB-3709 |
| methylation profiling by high throughput sequencing | EFO_0002761 | E-MTAB-3181 |
| microRNA profiling by array | EFO_0000753 | E-MTAB-3303 |
| microRNA profiling by high throughput sequencing | EFO_0002896 | E-MTAB-3251 |
| MNase-seq | EFO_0003751 | E-MTAB-2671 |
| proteomic profiling by array | EFO_0002765 | E-MTAB-1245 |
| proteomic profiling by mass spectrometer | EFO_0002766 | E-MTAB-869 |
| RIP-chip by array | EFO_0005517 | E-MTAB-3881 |
| Ribo-seq | EFO_0008891 | E-MTAB-8039 |
| RIP-seq | EFO_0005310 | E-MTAB-3195 |
| RNA-seq of coding RNA | EFO_0003738 | E-MTAB-1147 |
| RNA-seq of coding RNA from single cells | EFO_0005684 | E-MTAB-2805 |
| RNA-seq of non coding RNA | EFO_0003737 | E-MTAB-2206 |
| RNA-seq of non coding RNA from single cells | EFO_0005685 | |
| RNA-seq of total RNA | EFO_0009653 | E-MTAB-8118 |
| tiling path by array | EFO_0001031 | E-MTAB-3506 |
| transcription profiling by array | EFO_0002768 | E-MTAB-2133 |
| transcription profiling by MPSS | EFO_0002942 | E-GEOD-50020 |
| transcription profiling by RT-PCR | EFO_0002943 | E-MTAB-3152 |
| transcription profiling by SAGE | EFO_0002941 | E-GEOD-30069 |
| transcription profiling by tiling array | EFO_0002769 | E-MTAB-2241 |
| translation profiling | EFO_0001033 | E-MTAB-3583 |
| whole chromosome random sequencing | EFO_0004160 | E-MTAB-2888 |


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