| RFmarkerDetector | Multivariate Analysis of Metabolomics Data using Random Forests |
| rfml | MarkLogic NoSQL Database Server in-Database Analytics for R |
| Rfmtool | Fuzzy Measure Tools for R |
| rfoaas | R Interface to 'FOAAS' |
| RFOC | Graphics for Spherical Distributions and Earthquake Focal Mechanisms |
| RForcecom | Data Integration Feature for Force.com and Salesforce.com |
| rfordummies | Code Examples to Accompany the Book "R for Dummies" |
| rforensicbatwing | BATWING for calculating forensic trace-suspect match probabilities |
| rForest | Forest Inventory and Analysis |
| RFormatter | R Source Code Formatter |
| rfPermute | Estimate Permutation p-Values for Random Forest Importance Metrics |
| RFreak | R/FrEAK interface |
| rFSA | Feasible Solution Algorithm for Finding Best Subsets and Interactions |
| rFTRLProximal | FTRL-Proximal Algorithm |
| rfUtilities | Random Forests Model Selection and Performance Evaluation |
| RGA | A Google Analytics API Client |
| Rga4gh | An Interface to the GA4GH API |
| rgabriel | Gabriel Multiple Comparison Test and Plot the Confidence Interval on Barplot |
| rgam | Robust Generalized Additive Model |
| rGammaGamma | Gamma convolutions for methylation array background correction |
| Rgb | The R Genome Browser |
| rgbif | Interface to the Global 'Biodiversity' Information Facility 'API' |
| RGBM | LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network Reconstruction |
| Rgbp | Hierarchical Modeling and Frequency Method Checking on Overdispersed Gaussian, Poisson, and Binomial Data |
| RGCCA | Regularized and Sparse Generalized Canonical Correlation Analysis for Multiblock Data |
| rgcvpack | R Interface for GCVPACK Fortran Package |
| rgdal | Bindings for the Geospatial Data Abstraction Library |
| RGENERATE | Tools to Generate Vector Time Series |
| RGENERATEPREC | Tools to Generate Daily-Precipitation Time Series |
| RGenetics | R packages for genetics research |
| rgenoud | R Version of GENetic Optimization Using Derivatives |
| rgeoapi | Get Information from the GeoAPI |
| rgeolocate | IP Address Geolocation |
| rgeos | Interface to Geometry Engine - Open Source (GEOS) |
| rgexf | Build, Import and Export GEXF Graph Files |
| rggobi | Interface Between R and 'GGobi' |
| rgho | Access WHO Global Health Observatory Data from R |
| RGIFT | Create quizzes in GIFT Format |
| rgl | 3D Visualization Using OpenGL |
| rglobi | R Interface to Global Biotic Interactions |
| Rglpk | R/GNU Linear Programming Kit Interface |
| rglwidget | 'rgl' in 'htmlwidgets' Framework |
| Rgnuplot | R Interface for Gnuplot |
| rGoodData | GoodData API Client Package |
| RGoogleAnalytics | R Wrapper for the Google Analytics API |
| RGoogleAnalyticsPremium | Unsampled Data in R for Google Analytics Premium Accounts |
| RGoogleFit | R Interface to Google Fit API |
| RgoogleMaps | Overlays on Static Maps |
| rgp | R genetic programming framework |
| rgpui | UI for the RGP genetic programming framework |
| rgr | Applied Geochemistry EDA |
| RGraphics | Data and Functions from the Book R Graphics, Second Edition |
| rgrass7 | Interface Between GRASS 7 Geographical Information System and R |
| rGroovy | Groovy Language Integration |
| RGtk2 | R Bindings for Gtk 2.8.0 and Above |
| RGtk2Extras | Data frame editor and dialog making wrapper for RGtk2 |
| rgw | Goodman-Weare Affine-Invariant Sampling |
| RH2 | DBI/RJDBC interface to h2 Database |
| rhandsontable | Interface to the 'Handsontable.js' Library |
| rHealthDataGov | Retrieve data sets from the HealthData.gov data API |
| RHMS | Hydrologic Modelling System for R Users |
| rhnerm | Random Heteroscedastic Nested Error Regression |
| rhoR | Rho for Inter Rater Reliability |
| rhosp | Side Effect Risks in Hospital : Simulation and Estimation |
| Rhpc | Permits *apply() Style Dispatch for 'HPC' |
| RHPCBenchmark | Benchmarks for High-Performance Computing Environments |
| RhpcBLASctl | Control the Number of Threads on 'BLAS' |
| rHpcc | Interface between HPCC and R |
| RHRV | Heart Rate Variability Analysis of ECG Data |
| RHT | Regularized Hotelling's T-square Test for Pathway (Gene Set) Analysis |
| ri | ri: R package for performing randomization-based inference for experiments |
| RI2by2 | Randomization Inference for Treatment Effects on a Binary Outcome |
| RIA | Radiomics Image Analysis Toolbox for Grayscale Images |
| riceware | A Diceware Passphrase Implementation |
| rich | Computes and Compares Species Richnesses |
| ridge | Ridge Regression with Automatic Selection of the Penalty Parameter |
| RidgeFusion | R Package for Ridge Fusion in Statistical Learning |
| ridigbio | Interface to the iDigBio Data API |
| Ridit | Ridit Analysis (An extension of the Kruskal-Wallis Test.) |
| riem | Accesses Weather Data from the Iowa Environment Mesonet |
| rif | Client for 'Neuroscience' Information Framework 'APIs' |
| RIFS | Random Iterated Function System (RIFS) |
| RImageJROI | Read 'ImageJ' Region of Interest (ROI) Files |
| RImagePalette | Extract the Colors from Images |
| RImpala | Using Cloudera 'Impala' Through 'R' |
| rinat | Access iNaturalist Data Through APIs |
| rindex | Indexing for R |
| ring | Circular / Ring Buffers |
| RInno | An Installation Framework for Shiny Apps |
| RInside | C++ Classes to Embed R in C++ Applications |
| RInSp | R Individual Specialization (RInSp) |
| rintrojs | Wrapper for the 'Intro.js' Library |
| rio | A Swiss-Army Knife for Data I/O |
| rioja | Analysis of Quaternary Science Data |
| Rip46 | Utils for IP4 and IP6 Addresses |
| ripa | R Image Processing and Analysis |
| rIsing | High-Dimensional Ising Model Selection |
| RiskPortfolios | Computation of Risk-Based Portfolios |
| riskR | Risk Management |
| riskRegression | Risk Regression Models and Prediction Scores for Survival Analysis with Competing Risks |
| risksetROC | Riskset ROC curve estimation from censored survival data |
| riskSimul | Risk Quantification for Stock Portfolios under the T-Copula Model |
| RISmed | Download Content from NCBI Databases |
| Ritc | Isothermal Titration Calorimetry (ITC) Data Analysis |
| rite | The Right Editor to Write R |
| ritis | Integrated Taxonomic Information System Client |
| RItools | Randomization Inference Tools |
| riv | Robust instrumental variables estimator |
| riverdist | River Network Distance Computation and Applications |
| rivernet | Read, Analyze and Plot River Networks |
| riverplot | Sankey or Ribbon Plots |
| rivervis | River Visualisation Tool |
| Rivivc | In vitro in vivo correlation linear level A |
| rivr | Steady and Unsteady Open-Channel Flow Computation |
| RJaCGH | Reversible Jump MCMC for the Analysis of CGH Arrays |
| rjade | A Clean, Whitespace-Sensitive Template Language for Writing HTML |
| RJafroc | Analysis of Data Acquired Using the Receiver Operating Characteristic Paradigm and Its Extensions |
| rjags | Bayesian Graphical Models using MCMC |
| rJava | Low-Level R to Java Interface |
| RJDBC | Provides access to databases through the JDBC interface |
| rje | Miscellaneous useful functions |
| rjmcmc | Reversible-Jump MCMC Using Post-Processing |
| rJPSGCS | R-interface to Gene Drop Simulation from JPSGCS |
| Rjpstatdb | R interface of the Gateway to Advanced and User-friendly Statistics Service |
| RJSDMX | R Interface to SDMX Web Services |
| rjson | JSON for R |
| rjsonapi | Consumer for APIs that Follow the JSON API Specification |
| RJSONIO | Serialize R objects to JSON, JavaScript Object Notation |
| RJSplot | Interactive Graphs with R |
| rjstat | Read and Write 'JSON-stat' Data Sets |
| rJython | R interface to Python via Jython |
| rkafka | Using Apache 'Kafka' Messaging Queue Through 'R' |
| rkafkajars | External Jars Required for Package 'rkafka' |
| RKEA | R/KEA Interface |
| RKEAjars | R/KEA Interface Jars |
| RKEEL | Using Keel in R Code |
| RKEELdata | Datasets from KEEL for it Use in RKEEL |
| RKEELjars | Java Executable .jar Files for 'RKEEL' |
| rKIN | (Kernel) Isotope Niche Estimation |
| RKlout | Fetch Klout Scores for Twitter Users |
| rknn | Random KNN Classification and Regression |
| Rknots | Topological Analysis of Knotted Proteins, Biopolymers and 3D Structures |
| rkt | Mann-Kendall Test, Seasonal and Regional Kendall Tests |
| rkvo | Read Key/Value Pair Observations |
| Rlab | Functions and Datasets Required for ST370 class |
| Rlabkey | Data Exchange Between R and LabKey Server |
| rLakeAnalyzer | Lake Physics Tools |
| rlang | Functions for Base Types and Core R and 'Tidyverse' Features |
| rlas | Read and Write 'las' and 'laz' Binary File Formats Used for Remote Sensing Data |
| rld | Analyze and Design Repeated Low-Dose Challenge Experiments |
| Rlda | Bayesian LDA for Mixed-Membership Clustering Analysis |
| rLDCP | Text Generation from Data |
| rleafmap | Interactive Maps with R and Leaflet |
| rlecuyer | R Interface to RNG with Multiple Streams |
| Rlibeemd | Ensemble Empirical Mode Decomposition (EEMD) and Its Complete Variant (CEEMDAN) |
| rLiDAR | LiDAR Data Processing and Visualization |
| rLindo | R Interface to LINDO API |
| Rlinkedin | Access to the LinkedIn API via R |
| rlist | A Toolbox for Non-Tabular Data Manipulation |
| rlm | Robust Fitting of Linear Model |
| rlo | Utilities for Writing to 'LibreOffice Writer' Documents |
| Rlof | R Parallel Implementation of Local Outlier Factor(LOF) |
| RLogicalOps | Process Logical Operations |
| RLRsim | Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Models |
| RLT | Reinforcement Learning Trees |
| rLTP | R Interface to the 'LTP'-Cloud Service |
| RLumModel | Solving Ordinary Differential Equations to Understand Luminescence |
| RLumShiny | 'Shiny' Applications for the R Package 'Luminescence' |
| rly | 'Lex' and 'Yacc' |
| RM.weights | Weighted Rasch Modeling and Extensions using Conditional Maximum Likelihood |
| RM2 | Revenue Management and Pricing Package |
| rmaf | Refined Moving Average Filter |
| RMallow | Fit Multi-Modal Mallows' Models to ranking data |
| Rmalschains | Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R |
| rmapshaper | Edit 'GeoJSON' and Spatial Objects |
| RmarineHeatWaves | Detect Marine Heat Waves and Marine Cold Spells |
| RMark | R Code for Mark Analysis |
| rmarkdown | Dynamic Documents for R |
| rmatio | Read and Write Matlab Files |
| RMAWGEN | Multi-Site Auto-Regressive Weather GENerator |
| RMC | Functions for fitting Markov models |
| rmcfs | The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery |
| rmcorr | Repeated Measures Correlation |
| rmdformats | HTML Output Formats and Templates for 'rmarkdown' Documents |
| rmdHelpers | Helper Functions for Rmd Documents |
| rmdshower | 'R' 'Markdown' Format for 'shower' Presentations |
| RMediation | Mediation Analysis Confidence Intervals |
| rmeta | Meta-analysis |
| rmetasim | An Individual-Based Population Genetic Simulation Environment |
| rmgarch | Multivariate GARCH Models |
| rminer | Data Mining Classification and Regression Methods |
| Rmisc | Rmisc: Ryan Miscellaneous |
| Rmixmod | Supervised, Unsupervised, Semi-Supervised Classification with MIXture MODelling (Interface of MIXMOD Software) |
| RmixmodCombi | Combining Mixture Components for Clustering |
| RMixpanel | API for Mixpanel |
| RMKdiscrete | Sundry Discrete Probability Distributions |
| rmngb | Miscellaneous Collection of Functions for Medical Data Analysis |
| RMOA | Connect R with MOA for Massive Online Analysis |
| RMOAjars | External jars required for package RMOA |
| RMongo | MongoDB Client for R |
| Rmosek | The R-to-MOSEK Optimization Interface |
| rmp | Rounded Mixture Package. Performs Probability Mass Function Estimation with Nonparametric Mixtures of Rounded Kernels |
| Rmpfr | R MPFR - Multiple Precision Floating-Point Reliable |
| Rmpi | Interface (Wrapper) to MPI (Message-Passing Interface) |
| rmpw | Causal Mediation Analysis Using Weighting Approach |
| rMR | Importing Data from Loligo Systems Software, Calculating Metabolic Rates and Critical Tensions |
| RMRAINGEN | RMRAINGEN (R Multi-site RAINfall GENeretor): a package to generate daily time series of rainfall from monthly mean values |
| rms | Regression Modeling Strategies |
| rms.gof | Root-mean-square goodness-of-fit test for simple null hypothesis |
| rmsfact | Amazing Random Facts About the World's Greatest Hacker |
| RMThreshold | Signal-Noise Separation in Random Matrices by using Eigenvalue Spectrum Analysis |
| RMTstat | Distributions, Statistics and Tests derived from Random Matrix Theory |
| rmumps | Wrapper for MUMPS Library |
| rmutil | Utilities for Nonlinear Regression and Repeated Measurements Models |
| RMySQL | Database Interface and 'MySQL' Driver for R |
| RNAseqNet | Log-Linear Poisson Graphical Model with Hot-Deck Multiple Imputation |
| rnaseqWrapper | Wrapper for several R packages and scripts to automate RNA-seq analysis |
| RNAstructureModuleMiner | RNA Secondary Structure Comparison and Module Mining |
| rnaturalearth | World Map Data from Natural Earth |
| rnaturalearthdata | World Vector Map Data from Natural Earth Used in 'rnaturalearth' |
| RnavGraph | Using Graphs as a Navigational Infrastructure |
| RnavGraphImageData | Some image data used in the RnavGraph package demos |
| RNaviCell | Visualization of High-Throughput Data on Large-Scale Biological Networks |
| RNCBIEUtilsLibs | EUtils libraries for use in the R environment |
| RNCEP | Obtain, Organize, and Visualize NCEP Weather Data |
| rncl | An Interface to the Nexus Class Library |
| RND | Risk Neutral Density Extraction Package |
| RndTexExams | Build and Grade Multiple Choice Exams with Randomized Content |
| RNeo4j | Neo4j Driver for R |
| rneos | XML-RPC Interface to NEOS |
| rnetcarto | Fast Network Modularity and Roles Computation by Simulated Annealing (Rgraph C Library Wrapper for R) |
| RNetCDF | Interface to NetCDF Datasets |
| RNetLogo | Provides an Interface to the Agent-Based Modelling Platform NetLogo |
| RNewsflow | Tools for Analyzing Content Homogeneity and News Diffusion using Computational Text Analysis |
| RNeXML | Semantically Rich I/O for the 'NeXML' Format |
| rngSetSeed | Seeding the Default RNG with a Numeric Vector |
| rngtools | Utility functions for working with Random Number Generators |
| rngWELL | Toolbox for WELL Random Number Generators |
| rngwell19937 | Random number generator WELL19937a with 53 or 32 bit output |
| RNHANES | Facilitates Analysis of CDC NHANES Data |
| RNifti | Fast R and C++ Access to NIfTI Images |
| RNiftyReg | Image Registration Using the 'NiftyReg' Library |
| rNMF | Robust Nonnegative Matrix Factorization |
| rnn | Recurrent Neural Network |
| rnoaa | 'NOAA' Weather Data from R |
| rNOMADS | An Interface to the NOAA Operational Model Archive and Distribution System |
| rnpn | Interface to the National 'Phenology' Network 'API' |
| RNRCS | Download NRCS Data |
| rnrfa | UK National River Flow Archive Data from R |
| roadoi | Find Free Versions of Scholarly Publications via the oaDOI Service |
| roahd | Robust Analysis of High Dimensional Data |
| ROAuth | R Interface For OAuth |
| RobAStBase | Robust Asymptotic Statistics |
| RobAStRDA | Interpolation Grids for Packages of the 'RobASt' - Family of Packages |
| robCompositions | Robust Estimation for Compositional Data |
| robcor | Robust Correlations |
| robeth | R functions for robust statistics |
| robets | Forecasting Time Series with Robust Exponential Smoothing |
| robfilter | Robust Time Series Filters |
| RobLox | Optimally Robust Influence Curves and Estimators for Location and Scale |
| RobLoxBioC | Infinitesimally robust estimators for preprocessing omics data |
| robmed | (Robust) Mediation Analysis |
| robotstxt | A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler' Permissions Checker |
| RobPer | Robust Periodogram and Periodicity Detection Methods |
| robreg3S | Three-Step Regression and Inference for Cellwise and Casewise Contamination |
| RobRex | Optimally robust influence curves for regression and scale |
| RobRSVD | Robust Regularized Singular Value Decomposition |
| RObsDat | Data Management for Hydrology and Beyond Using the Observations Data Model |
| robumeta | Robust Variance Meta-Regression |
| robust | Port of the S+ "Robust Library" |
| RobustAFT | Truncated Maximum Likelihood Fit and Robust Accelerated Failure Time Regression for Gaussian and Log-Weibull Case |
| robustarima | Robust ARIMA Modeling |
| robustbase | Basic Robust Statistics |
| robustDA | Robust Mixture Discriminant Analysis |
| robustETM | Robust Methods using Exponential Tilt Model |
| robustfa | An Object Oriented Solution for Robust Factor Analysis |
| robustgam | Robust Estimation for Generalized Additive Models |
| RobustGaSP | Robust Gaussian Stochastic Process Emulation |
| robustHD | Robust Methods for High-Dimensional Data |
| robustlmm | Robust Linear Mixed Effects Models |
| robustloggamma | Robust Estimation of the Generalized log Gamma Model |
| robustrank | Robust Rank-Based Tests |
| RobustRankAggreg | Methods for robust rank aggregation |
| robustrao | An Extended Rao-Stirling Diversity Index to Handle Missing Data |
| robustreg | Robust Regression Functions |
| robustsae | Robust Bayesian Small Area Estimation |
| robustvarComp | Robust Estimation of Variance Component Models |
| robustX | 'eXtra' / 'eXperimental' Functionality for Robust Statistics |
| ROC632 | Construction of diagnostic or prognostic scoring system and internal validation of its discriminative capacities based on ROC curve and 0.633+ boostrap resampling |
| rocc | ROC based classification |
| roccv | ROC for Cross Validation Results |
| rockchalk | Regression Estimation and Presentation |
| RockFab | Rock fabric and strain analysis tools |
| rocNIT | Non-Inferiority Test for Paired ROC Curves |
| rococo | Robust Rank Correlation Coefficient and Test |
| ROCR | Visualizing the Performance of Scoring Classifiers |
| ROCS | Receiver Operating Characteristics Surface |
| ROCt | Time-Dependent ROC Curve Estimators and Expected Utility Functions |
| ROCwoGS | Non-parametric estimation of ROC curves without Gold Standard Test |
| Rodam | Wrapper Functions for 'ODAM' (Open Data for Access and Mining) Web Services |
| RODBC | ODBC Database Access |
| RODBCDBI | Provides Access to Databases Through the ODBC Interface |
| RODBCext | Parameterized Queries Extension for RODBC |
| rodd | Optimal Discriminating Designs |
| rodeo | A Code Generator for ODE-Based Models |
| rodham | Fetch Hillary Rodham Clinton's Emails |
| RODM | R interface to Oracle Data Mining |
| ROI | R Optimization Infrastructure |
| ROI.models.miplib | R Optimization Infrastructure: 'MIPLIB' 2010 Benchmark Instances |
| ROI.models.netlib | 'ROI' Optimization Problems Based on 'NETLIB-LP' |
| ROI.plugin.alabama | 'alabama' Plugin for the 'R' Optimization Infrastructure |
| ROI.plugin.clp | 'Clp (Coin-or linear programming)' Plugin for the 'R' Optimization Interface |
| ROI.plugin.cplex | ROI Plug-in CPLEX |
| ROI.plugin.ecos | 'ECOS' Plugin for the 'R' Optimization Infrastructure |
| ROI.plugin.glpk | ROI Plug-in GLPK |
| ROI.plugin.ipop | ROI Plug-in {ipop} |
| ROI.plugin.lpsolve | 'lp_solve' Plugin for the 'R' Optimization Interface |
| ROI.plugin.msbinlp | 'Multi-Solution' Binary Linear Problem Plugin for the 'R' Optimization Interface |
| ROI.plugin.nloptr | 'ROI'-Plugin 'NLOPTR' |
| ROI.plugin.optimx | 'ROI'-Plugin 'optimx' |
| ROI.plugin.quadprog | ROI Plug-in {quadprog} |
| ROI.plugin.scs | 'SCS' Plugin for the 'R' Optimization Infrastructure |
| ROI.plugin.symphony | ROI Plug-in SYMPHONY |
| roll | Rolling Statistics |
| rollbar | Error Tracking and Logging |
| rollply | Moving-Window Add-on for 'plyr' |
| rolr | Finding Optimal Three-Group Splits Based on a Survival Outcome |
| rolypoly | Identifying Trait-Relevant Functional Annotations |
| ROMIplot | Plots Surfaces of Rates of Mortality Improvement |
| Rook | Rook - a web server interface for R |
| RootsExtremaInflections | Finds Roots, Extrema and Inflection Points of a Curve |
| rootSolve | Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations |
| rootWishart | Distribution of Largest Root for Single and Double Wishart Settings |
| rope | Model Selection with FDR Control of Selected Variables |
| ropenaq | Accesses Air Quality Data from the Open Data Platform OpenAQ |
| ROpenDota | Access OpenDota Services in R |
| ROpenFIGI | R Interface to OpenFIGI |
| ropensecretsapi | R Package for the OpenSecrets.org API |
| ROpenWeatherMap | R Interface to OpenWeatherMap API |
| ropercenter | Reproducible Data Retrieval from the Roper Center Data Archive |
| ROptEst | Optimally Robust Estimation |
| ROptEstOld | Optimally robust estimation - old version |
| ROptimizely | R Optimizely API |
| ROptRegTS | Optimally robust estimation for regression-type models |
| ROracle | OCI Based Oracle Database Interface for R |
| rorcid | Interface to the 'Orcid.org' 'API' |
| rorutadis | Robust Ordinal Regression UTADIS |
| ROSE | ROSE: Random Over-Sampling Examples |
| rosetteApi | Rosette API |
| rosm | Plot Raster Map Tiles from Open Street Map and Other Sources |
| rospca | Robust Sparse PCA using the ROSPCA Algorithm |
| rotationForest | Fit and Deploy Rotation Forest Models |
| rotations | Tools for Working with Rotation Data |
| Rothermel | Rothermel fire spread model for R |
| rotl | Interface to the 'Open Tree of Life' API |
| roughrf | Roughened Random Forests for Binary Classification |
| RoughSetKnowledgeReduction | Simplification of Decision Tables using Rough Sets |
| RoughSets | Data Analysis Using Rough Set and Fuzzy Rough Set Theories |
| rowr | Row-Based Functions for R Objects |
| roxygen2 | In-Line Documentation for R |
| royston | Royston's H Test: Multivariate Normality Test |
| RPANDA | Phylogenetic ANalyses of DiversificAtion |
| rpanel | Simple interactive controls for R using the tcltk library |
| rpart | Recursive Partitioning and Regression Trees |
| rpart.plot | Plot 'rpart' Models: An Enhanced Version of 'plot.rpart' |
| rpart.utils | Tools for parsing and manipulating rpart objects, including generating machine readable rules |
| rpartitions | Code for integer partitioning |
| rpartScore | Classification trees for ordinal responses |
| rpatrec | Recognising Visual Charting Patterns in Time Series Data |
| rpca | RobustPCA: Decompose a Matrix into Low-Rank and Sparse Components |
| rpcdsearch | Tools for the Construction of Clinical Code Lists for Primary Care Database Studies |
| RPCLR | RPCLR (Random-Penalized Conditional Logistic Regression) |
| Rpdb | Read, write, visualize and manipulate PDB files |
| rpdo | Pacific Decadal Oscillation Index Data |
| RpeakChrom | Tools for Chromatographic Column Characterization and Modelling Chromatographic Peak |
| RPEnsemble | Random Projection Ensemble Classification |
| RPEXE.RPEXT | Reduced Piecewise Exponential Estimate/Test Software |
| rpf | Response Probability Functions |
| rpg | Easy Interface to Advanced PostgreSQL Features |
| rpgm | Fast Simulation of Normal/Exponential Random Variables and Stochastic Differential Equations |
| rphast | Interface to PHAST Software for Comparative Genomics |
| Rphylip | An R interface for PHYLIP |
| Rphylopars | Phylogenetic Comparative Tools for Missing Data and Within-Species Variation |
| rpinterest | Access Pinterest API |
| rpivotTable | Build Powerful Pivot Tables and Dynamically Slice & Dice your Data |
| rplos | Interface to the Search 'API' for 'PLoS' Journals |
| rplotengine | R as a Plotting Engine |
| RPMG | Graphical User Interface (GUI) for Interactive R Analysis Sessions |
| RPMM | Recursively Partitioned Mixture Model |
| rpms | Recursive Partitioning for Modeling Survey Data |
| rpn | Converter and Interpreter for Reverse Polish Notation Expressions |
| rpnf | Point and Figure Package |
| Rpoppler | PDF Tools Based on Poppler |
| rportfolios | Random Portfolio Generation |
| rpostgis | R Interface to a 'PostGIS' Database |
| rpostgisLT | Managing Animal Movement Data with 'PostGIS' and R |
| RPostgreSQL | R interface to the PostgreSQL database system |
| rPowerSampleSize | Sample Size Computations Controlling the Type-II Generalized Family-Wise Error Rate |
| RPPairwiseDesign | Resolvable partially pairwise balanced design and Space-filling design via association scheme |
| RPPanalyzer | Reads, Annotates, and Normalizes Reverse Phase Protein Array Data |
| rpql | Regularized PQL for Joint Selection in GLMMs |
| rPref | Database Preferences and Skyline Computation |
| RPresto | DBI Connector to Presto |
| rprev | Estimating Disease Prevalence from Registry Data |
| rprime | Functions for Working with 'Eprime' Text Files |
| rprintf | Adaptive Builder for Formatted Strings |
| rprojroot | Finding Files in Project Subdirectories |
| RProtoBuf | R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3) |
| rpsftm | Rank Preserving Structural Failure Time Models |
| rpsychi | Statistics for psychiatric research |
| RPtests | Goodness of Fit Tests for High-Dimensional Linear Regression Models |
| rptR | Repeatability Estimation for Gaussian and Non-Gaussian Data |
| rpubchem | An Interface to the PubChem Collection |
| RPublica | ProPublica API Client |
| RPushbullet | R Interface to the Pushbullet Messaging Service |
| RPyGeo | ArcGIS Geoprocessing in R via Python |
| rPython | Package Allowing R to Call Python |
| RQDA | R-Based Qualitative Data Analysis |
| RQGIS | Integrating R with QGIS |
| rqPen | Penalized Quantile Regression |
| Rquake | Seismic Hypocenter Determination |
| RQuantLib | R Interface to the 'QuantLib' Library |
| rr | Statistical Methods for the Randomized Response Technique |
| Rramas | Matrix population models |
| rRAP | Real-Time Adaptive Penalization for Streaming Lasso Models |
| RRate | Estimating Replication Rate for Genome-Wide Association Studies |
| rrBLUP | Ridge Regression and Other Kernels for Genomic Selection |
| rrBlupMethod6 | Re-parametrization of RR-BLUP to allow for a fixed residual variance |
| rrcov | Scalable Robust Estimators with High Breakdown Point |
| rrcovHD | Robust Multivariate Methods for High Dimensional Data |
| rrcovNA | Scalable Robust Estimators with High Breakdown Point for Incomplete Data |
| Rrdrand | 'DRNG' on Intel CPUs with the 'RdRand' Instruction for R |
| rrecsys | Environment for Assessing Recommender Systems |
| rredis | "Redis" Key/Value Database Client |
| rredlist | 'IUCN' Red List Client |
| RRedshiftSQL | R Interface to the 'Redshift' Database |
| rrefine | R Client for OpenRefine API |
| rrepast | Invoke 'Repast Simphony' Simulation Models |
| RRF | Regularized Random Forest |
| rriskDistributions | Fitting Distributions to Given Data or Known Quantiles |
| rrlda | Robust Regularized Linear Discriminant Analysis |
| RRNA | Secondary Structure Plotting for RNA |
| rrr | Reduced-Rank Regression |
| RRreg | Correlation and Regression Analyses for Randomized Response Data |
| RRTCS | Randomized Response Techniques for Complex Surveys |
| RSA | Response Surface Analysis |
| RSADBE | Data related to the book "R Statistical Application Development by Example" |
| rsae | Robust Small Area Estimation |
| RSAGA | SAGA Geoprocessing and Terrain Analysis in R |
| RSAgeo | Resampling-Based Analysis of Geostatistical Data |
| Rsampletrees | MCMC Sampling of Gene Genealogies Conditional on Genetic Data |
| Rsampling | Ports the Workflow of "Resampling Stats" Add-in to R |
| RSAP | SAP Netweaver RFC connector for R |
| rSARP | Functions to Create and Evaluate Search and Rescue Plans |
| RSarules | Random Sampling Association Rules from a Transaction Dataset |
| rsatscan | Tools, Classes, and Methods for Interfacing with SaTScan Stand-Alone Software |
| RSauceLabs | R Wrapper for 'SauceLabs' REST API |
| rSCA | An R Package for Stepwise Cluster Analysis |
| RSCABS | Rao-Scott Cochran-Armitage by Slices Trend Test |
| rscala | Bi-Directional Interface Between R and Scala with Callbacks |
| rscimark | SciMark 2.0 Benchmark for Scientific and Numerical Computing |
| RSclient | Client for Rserve |
| rsconnect | Deployment Interface for R Markdown Documents and Shiny Applications |
| rscopus | Scopus Database 'API' Interface |
| rscorecard | A Method to Download Department of Education College Scorecard Data |
| RSDA | R to Symbolic Data Analysis |
| rsdepth | Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis |
| rsdmx | Tools for Reading SDMX Data and Metadata |
| RSeed | Borenstein Analysis |
| rseedcalc | Estimating the Proportion of Genetically Modified Seeds in Seedlots via Multinomial Group Testing |
| RSEIS | Seismic Time Series Analysis Tools |
| RSelenium | R Bindings for 'Selenium WebDriver' |
| rsem | Robust Structural Equation Modeling with Missing Data and Auxiliary Variables |
| RSentiment | Analyse Sentiment of English Sentences |
| Rserve | Binary R server |
| rSFA | Slow Feature Analysis in R |
| rsgcc | Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data |
| rsggm | Robust Sparse Gaussian Graphical Modeling via the Gamma-Divergence |
| RSGHB | Functions for Hierarchical Bayesian Estimation: A Flexible Approach |
| RSiena | Siena - Simulation Investigation for Empirical Network Analysis |
| rsig | Robust Signature Selection for Survival Outcomes |
| RsimMosaic | R Simple Image Mosaic Creation Library |
| RSIP | Remote Sensing and Image Processing |
| RSiteCatalyst | R Client for Adobe Analytics API V1.4 |
| RSKC | Robust Sparse K-Means |
| rslp | A Stemming Algorithm for the Portuguese Language |
| rslurm | Submit R Calculations to a 'SLURM' Cluster |
| rsm | Response-Surface Analysis |
| RSmartlyIO | Loading Facebook and Instagram Advertising Data from 'Smartly.io' |
| RSMET | Get Real-Time Meteorological Data in SMET Format |
| rsml | Plant Root System Markup Language (RSML) File Processing |
| RSNNS | Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS) |
| rsnps | Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web |
| RSNPset | Efficient Score Statistics for Genome-Wide SNP Set Analysis |
| RSocrata | Download or Upload 'Socrata' Data Sets |
| rsoi | El Nino/Southern Oscillation (ENSO) Index |
| Rsolnp | General Non-Linear Optimization |
| rsolr | R to Solr Interface |
| Rsomoclu | Somoclu |
| rspa | Adapt Numerical Records to Fit (in)Equality Restrictions |
| rSPACE | Spatially-Explicit Power Analysis for Conservation and Ecology |
| rsparkling | R Interface for H2O Sparkling Water |
| RSpectra | Solvers for Large Scale Eigenvalue and SVD Problems |
| RSpincalc | Conversion Between Attitude Representations of DCM, Euler Angles, Quaternions, and Euler Vectors |
| RSPS | RNA-Seq Power Simulation |
| rsq | R-Squared and Related Measures |
| RSQLite | 'SQLite' Interface for R |
| Rssa | A Collection of Methods for Singular Spectrum Analysis |
| RSSL | Implementations of Semi-Supervised Learning Approaches for Classification |
| RSSOP | Simulation of Supply Reservoir Systems using Standard Operation Policy |
| rstack | Stack Data Type as an 'R6' Class |
| rstackdeque | Persistent Fast Amortized Stack and Queue Data Structures |
| rstan | R Interface to Stan |
| rstanarm | Bayesian Applied Regression Modeling via Stan |
| rstantools | Tools for Developing R Packages Interfacing with 'Stan' |
| RStata | A Bit of Glue Between R and Stata |
| rstatscn | R Interface for China National Data |
| rstiefel | Random orthonormal matrix generation on the Stiefel manifold |
| RStoolbox | Tools for Remote Sensing Data Analysis |
| RStorm | Simulate and Develop Streaming Processing in [R] |
| rstpm2 | Generalized Survival Models |
| rstream | Streams of Random Numbers |
| RStripe | A Convenience Interface for the Stripe Payment API |
| rstudioapi | Safely Access the RStudio API |
| rsubgroup | Subgroup Discovery and Analytics |
| rsunlight | Interface to 'Sunlight' Foundation 'APIs' |
| rsurfer | Manipulating 'Freesurfer' Generated Data |
| Rsurrogate | Robust Estimation of the Proportion of Treatment Effect Explained by Surrogate Marker Information |
| RSurveillance | Design and Analysis of Disease Surveillance Activities |
| RSurvey | Geographic Information System Application |
| rsvd | Randomized Singular Value Decomposition |
| rsvg | Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays |
| RSvgDevice | An R SVG graphics device |
| RSVGTipsDevice | An R SVG Graphics Device with Dynamic Tips and Hyperlinks |
| Rsymphony | SYMPHONY in R |
| rSymPy | R interface to SymPy computer algebra system |
| rt3 | Tic-Tac-Toe Package for R |
| rtable | Tabular Reporting Functions |
| rTableICC | Random Generation of Contingency Tables |
| rtape | Manage and manipulate large collections of R objects stored as tape-like files |
| Rtauchen | Discretization of AR(1) Processes |
| RTConnect | Tools for analyzing sales report files of iTunes Connect |
| RTDE | Robust Tail Dependence Estimation |
| rtdists | Response Time Distributions |
| rtematres | The rtematres API package |
| rTensor | Tools for Tensor Analysis and Decomposition |
| rtext | R6 Objects for Text and Data |
| Rtextrankr | TextRank for Korean |
| RTextTools | Automatic Text Classification via Supervised Learning |
| RTextureMetrics | Functions for calculation of texture metrics for Grey Level Co-occurrence Matrices |
| rtf | Rich Text Format (RTF) Output |
| rtfbs | Transcription Factor Binding Site Identification Tool |
| rticles | Article Formats for R Markdown |
| rtide | Tide Heights |
| rtiff | Read and Write TIFF Files |
| rtimes | Client for New York Times 'APIs' |
| rtip | Inequality, Welfare and Poverty Indices and Curves using the EU-SILC Data |
| rtk | Rarefaction Tool Kit |
| rtkore | 'STK++' Core Library Integration to 'R' using 'Rcpp' |
| Rtnmin | Truncated Newton Function Minimization with Bounds Constraints |
| RTOMO | Visualization for Seismic Tomography |
| rtop | Interpolation of Data with Variable Spatial Support |
| RTransProb | Analyze and Forecast Credit Migrations |
| rtrends | Analyze Download Logs from the CRAN RStudio Mirror |
| RTriangle | Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator |
| rtrie | A Simple R-Based Implementation of a Trie (A.k.a. Digital Tree/Radix Tree/Prefix Tree) |
| rtrim | Trends and Indices for Monitoring Data |
| rts | Raster Time Series Analysis |
| Rtsne | T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation |
| rtson | Typed JSON |
| Rttf2pt1 | 'ttf2pt1' Program |
| Rtts | Convert Text into Speech |
| RtutoR | Tutorial App for Learning R |
| Rtwalk | The R Implementation of the 't-walk' MCMC Algorithm |
| rtweet | Collecting Twitter Data |
| rtype | A strong type system for R |
| rtypeform | Interface to 'typeform' Results |
| Ruchardet | R package to detect character encoding |
| rucm | Implementation of Unobserved Components Model (UCM) |
| rucrdtw | R Bindings for the UCR Suite |
| rugarch | Univariate GARCH Models |
| rUnemploymentData | Data and Functions for USA State and County Unemployment Data |
| RUnit | R Unit Test Framework |
| runittotestthat | Convert 'RUnit' Test Functions into 'testthat' Tests |
| Runiversal | Runiversal - Package for converting R objects to Java variables and XML |
| runjags | Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS |
| Runuran | R Interface to the UNU.RAN Random Variate Generators |
| RunuranGUI | A GUI for the UNU.RAN random variate generators |
| rusda | Interface to USDA Databases |
| rust | Ratio-of-Uniforms Simulation with Transformation |
| ruv | Detect and Remove Unwanted Variation using Negative Controls |
| rv | Simulation-Based Random Variable Objects |
| RVAideMemoire | Diverse Basic Statistical and Graphical Functions |
| rvalues | R-Values for Ranking in High-Dimensional Settings |
| Rvcg | Manipulations of Triangular Meshes Based on the 'VCGLIB' API |
| rvcheck | R/Package Version Check |
| rversions | Query 'R' Versions, Including 'r-release' and 'r-oldrel' |
| rvertnet | Search 'Vertnet', a 'Database' of Vertebrate Specimen Records |
| rvest | Easily Harvest (Scrape) Web Pages |
| RVFam | Rare Variants Association Analyses with Family Data |
| rvg | R Graphics Devices for Vector Graphics Output |
| rvgtest | Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators |
| rvHPDT | Calling haplotype-based and variant-based pedigree disequilibrium test for rare variants in pedigrees |
| RVideoPoker | Play Video Poker with R |
| RViennaCL | 'ViennaCL' C++ Header Files |
| Rvmmin | Variable Metric Nonlinear Function Minimization |
| Rvoterdistance | Calculates the Distance Between Voter and Multiple Polling Locations |
| RVowpalWabbit | R Interface to the Vowpal Wabbit |
| RVPedigree | Methods for Family-Based Rare-Variant Genetic Association Tests |
| RVsharing | Probability of Sharing Rare Variants among Relatives |
| rvTDT | population control weighted rare-variants TDT |
| RVtests | Rare Variant Tests |
| rwars | R Client for the Star Wars API |
| Rwave | Time-Frequency Analysis of 1-D Signals |
| rWBclimate | A package for accessing World Bank climate data |
| RWBP | Detects spatial outliers using a Random Walk on Bipartite Graph |
| RWebLogo | plotting custom sequence logos |
| RWeka | R/Weka Interface |
| RWekajars | R/Weka Interface Jars |
| rwfec | R Wireless, Forward Error Correction |
| RWiener | Wiener Process Distribution Functions |
| RWildbook | Interface for the 'Wildbook' Wildlife Data Management Framework |
| rWind | Download, Edit and Transform Wind Data from GFS |
| RWinEdt | R Interface to 'WinEdt' |
| Rwinsteps | Running Winsteps in R |
| rworldmap | Mapping Global Data |
| rworldxtra | Country boundaries at high resolution |
| rwt | Rice Wavelet Toolbox wrapper |
| rwty | R We There Yet? Visualizing MCMC Convergence in Phylogenetics |
| rwunderground | R Interface to Weather Underground API |
| RxCEcolInf | R x C Ecological Inference With Optional Incorporation of Survey Information |
| RXKCD | Get XKCD Comic from R |
| RXMCDA | Functions to Parse and Create XMCDA Files |
| RxnSim | Functions to Compute Chemical Reaction Similarity |
| RxODE | Facilities for Simulating from ODE-Based Models |
| rxSeq | Combined Total and Allele Specific Reads Sequencing Study |
| RXshrink | Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression |
| Ryacas | R Interface to the Yacas Computer Algebra System |
| RYandexTranslate | R Interface to Yandex Translate API |
| RYoudaoTranslate | R package provide functions to translate English words into Chinese |
| ryouready | Companion to the Forthcoming Book - R you Ready? |
| rYoutheria | Access to the YouTheria Mammal Trait Database |
| rysgran | Grain size analysis, textural classifications and distribution of unconsolidated sediments |
| Rz | GUI Tool for Data Management like SPSS or Stata |
| RZabbix | R Module for Working with the 'Zabbix API' |
| rzmq | R Bindings for ZeroMQ |
| s2 | Google's S2 Library for Geometry on the Sphere |
| s20x | Functions for University of Auckland Course STATS 201/208 Data Analysis |
| s2dverification | Set of Common Tools for Forecast Verification |
| S2sls | Spatial Two Stage Least Squares Estimation |
| s4vd | Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection |
| saasCNV | Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data |
| sac | Semiparametric Analysis of Changepoint |
| saccades | Detection of Fixations in Eye-Tracking Data |
| SACCR | SA Counterparty Credit Risk under Basel III |
| SACOBRA | Self-Adjusting COBRA |
| SADEG | Stability Analysis in Differentially Expressed Genes |
| SADISA | Species Abundance Distributions with Independent-Species Assumption |
| sadists | Some Additional Distributions |
| sads | Maximum Likelihood Models for Species Abundance Distributions |
| sae | Small Area Estimation |
| sae2 | Small Area Estimation: Time-series Models |
| saemix | Stochastic Approximation Expectation Maximization (SAEM) algorithm |
| SAENET | A Stacked Autoencoder Implementation with Interface to 'neuralnet' |
| saeRobust | Robust Small Area Estimation |
| saery | Small Area Estimation for Rao and Yu Model |
| saeSim | Simulation Tools for Small Area Estimation |
| SAFD | Statistical Analysis of Fuzzy Data |
| SafeBayes | Generalized and Safe-Bayesian Ridge and Lasso Regression |
| safeBinaryRegression | Safe Binary Regression |
| SafeQuant | A Toolbox for the Analysis of Proteomics Data |
| safer | Encrypt and Decrypt Strings, R Objects and Files |
| safi | Sensitivity Analysis for Functional Input |
| SAGA | Software for the Analysis of Genetic Architecture |
| sAIC | Akaike Information Criterion for Sparse Estimation |
| SALES | Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric Least Squares (SALES) and Coupled Sparse Asymmetric Least Squares (COSALES) using Coordinate Descent and Proximal Gradient Algorithms |
| SALTSampler | Efficient Sampling on the Simplex |
| SAM | Sparse Additive Modelling |
| SAMM | Some Algorithms for Mixed Models |
| Sample.Size | Sample size calculation |
| SamplerCompare | A Framework for Comparing the Performance of MCMC Samplers |
| sampleSelection | Sample Selection Models |
| samplesize | Sample Size Calculation for Various t-Tests and Wilcoxon-Test |
| samplesize4surveys | Sample Size Calculations for Complex Surveys |
| samplesizelogisticcasecontrol | Sample Size Calculations for Case-Control Studies |
| SampleSizeMeans | Sample size calculations for normal means |
| SampleSizeProportions | Calculating sample size requirements when estimating the difference between two binomial proportions |
| sampling | Survey Sampling |
| samplingbook | Survey Sampling Procedures |
| samplingDataCRT | Sampling Data Within Different Study Designs for Cluster Randomized Trials |
| samplingEstimates | Sampling Estimates |
| SamplingStrata | Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys |
| samplingVarEst | Sampling Variance Estimation |
| sampSurf | Sampling Surface Simulation for Areal Sampling Methods |
| samr | SAM: Significance Analysis of Microarrays |
| SAMUR | Stochastic Augmentation of Matched Data Using Restriction Methods |
| SAMURAI | Sensitivity Analysis of a Meta-analysis with Unpublished but Registered Analytical Investigations |
| sand | Statistical Analysis of Network Data with R |
| sandwich | Robust Covariance Matrix Estimators |
| sanitizers | C/C++ source code to trigger Address and Undefined Behaviour Sanitizers |
| sankey | Sankey Diagrams |
| sanon | Stratified Analysis with Nonparametric Covariable Adjustment |
| sapa | Spectral Analysis for Physical Applications |
| SAPP | Statistical Analysis of Point Processes |
| sarima | Simulation and Prediction with Seasonal ARIMA Models |
| SARP.moodle | XML Output Functions for Easy Creation of Moodle Questions |
| sas7bdat | SAS Database Reader (experimental) |
| SAScii | Import ASCII files directly into R using only a SAS input script |
| SASmixed | Data sets from "SAS System for Mixed Models" |
| SASPECT | Significant AnalysiS of PEptide CounTs |
| SASxport | Read and Write 'SAS' 'XPORT' Files |
| satellite | Various Functions for Handling and Manipulating Remote Sensing Data |
| saturnin | Spanning Trees Used for Network Inference |
| SAVE | Bayesian Emulation, Calibration and Validation of Computer Models |
| saves | Fast load variables |
| saws | Small-Sample Adjustments for Wald tests Using Sandwich Estimators |
| sbart | Sequential BART for Imputation of Missing Covariates |
| sBF | Smooth Backfitting |
| sbfc | Selective Bayesian Forest Classifier |
| sbgcop | Semiparametric Bayesian Gaussian copula estimation and imputation |
| sBIC | Computing the Singular BIC for Multiple Models |
| sbioPN | sbioPN: Simulation of deterministic and stochastic spatial biochemical reaction networks using Petri Nets |
| sbmSDP | Semidefinite Programming for Fitting Block Models of Equal Block Sizes |
| SBRect | Detecting structural breaks using rectangle covering (non-parametric method) |
| sbrl | Scalable Bayesian Rule Lists Model |
| SBSA | Simplified Bayesian Sensitivity Analysis |
| sbtools | USGS ScienceBase Tools |
| sca | Simple Component Analysis |
| scagnostics | Compute scagnostics - scatterplot diagnostics |
| Scale | Likert Type Questionnaire Item Analysis |
| scales | Scale Functions for Visualization |
| scalpel | Processes Calcium Imaging Data |
| scalreg | Scaled sparse linear regression |
| scam | Shape Constrained Additive Models |
| scan | Single-Case Data Analyses for Single and Multiple AB Designs |
| scanstatistics | Space-Time Anomaly Detection using Scan Statistics |
| scape | Statistical Catch-at-Age Plotting Environment |
| scar | Shape-Constrained Additive Regression: a Maximum Likelihood Approach |
| scaRabee | Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models |
| scatterD3 | D3 JavaScript Scatterplot from R |
| scatterpie | Scatter Pie Plot |
| scatterplot3d | 3D Scatter Plot |
| SCBmeanfd | Simultaneous Confidence Bands for the Mean of Functional Data |
| scclust | Size-Constrained Clustering |
| scdhlm | Estimating Hierarchical Linear Models for Single-Case Designs |
| scenario | Construct Reduced Trees with Predefined Nodal Structures |
| SCEPtER | Stellar CharactEristics Pisa Estimation gRid |
| SCEPtERbinary | Stellar CharactEristics Pisa Estimation gRid for Binary Systems |
| SCGLR | Supervised Component Generalized Linear Regression |
| SchemaOnRead | Automated Schema on Read |
| scholar | Analyse Citation Data from Google Scholar |
| schoolmath | Functions and datasets for math used in school |
| schoRsch | Tools for Analyzing Factorial Experiments |
| schumaker | Schumaker Shape-Preserving Spline |
| schwartz97 | A package on the Schwartz two-factor commodity model |
| SCI | Standardized Climate Indices Such as SPI, SRI or SPEI |
| scidb | An R Interface to SciDB |
| SciencesPo | A Tool Set for Analyzing Political Behavior Data |
| scientoText | Text & Scientometric Analytics |
| scio | Sparse Column-wise Inverse Operator |
| sciplot | Scientific Graphing Functions for Factorial Designs |
| SciViews | SciViews GUI API - Main package |
| sclero | Measure Growth Patterns and Align Sampling Spots in Photographs |
| SCMA | Single-Case Meta-Analysis |
| scmamp | Statistical Comparison of Multiple Algorithms in Multiple Problems |
| score | A Package to Score Behavioral Questionnaires |
| ScoreGGUM | Score Persons Using the Generalized Graded Unfolding Model |
| scorer | Quickly Score Models in Data Science and Machine Learning |
| SCORER2 | SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences |
| scoring | Proper scoring rules |
| scoringRules | Scoring Rules for Parametric and Simulated Distribution Forecasts |
| ScottKnott | The ScottKnott Clustering Algorithm |
| ScottKnottESD | The Scott-Knott Effect Size Difference (ESD) Test |
| scout | Implements the Scout Method for Covariance-Regularized Regression |
| SCperf | Supply Chain Perform |
| scphaser | Phase Variants Within Genes Using Allele Counts |
| ScrabbleScore | Calculates Scrabble score for strings |
| scrapeR | Tools for Scraping Data from HTML and XML Documents |
| ScreenClean | Screen and clean variable selection procedures |
| scrime | Analysis of High-Dimensional Categorical Data such as SNP Data |
| scriptests | Transcript-Based Unit Tests that are Easy to Create and Maintain |
| scrm | Simulating the Evolution of Biological Sequences |
| SCRSELECT | Performs Bayesian Variable Selection on the Covariates in a Semi-Competing Risks Model |
| SCRT | Single-Case Randomization Tests |
| scrubr | Clean Biological Occurrence Records |
| scrypt | scrypt key derivation functions for R |
| scs | Splitting Conic Solver |
| scuba | Diving Calculations and Decompression Models |
| SCVA | Single-Case Visual Analysis |
| scvxclustr | Sparse Convex Clustering |
| sda | Shrinkage Discriminant Analysis and CAT Score Variable Selection |
| SDaA | Sampling: Design and Analysis |
| sdat | Signal Detection via Adaptive Test |
| sdcMicro | Statistical Disclosure Control Methods for Anonymization of Microdata and Risk Estimation |
| sdcTable | Methods for Statistical Disclosure Control in Tabular Data |
| sdcTarget | Statistical Disclosure Control Substitution Matrix Calculator |
| SDD | Serial Dependence Diagrams |
| SDDE | Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome Similarity Networks |
| sddpack | Semidiscrete Decomposition |
| sde | Simulation and Inference for Stochastic Differential Equations |
| sdef | Synthesizing List of Differentially Expressed Features |
| SDEFSR | Subgroup Discovery with Evolutionary Fuzzy Systems in R |
| sdm | Species Distribution Modelling |
| SDMPlay | Species Distribution Modelling Playground |
| sdmpredictors | Species Distribution Modelling Predictor Datasets |
| SDMTools | Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises |
| sdmvspecies | Create Virtual Species for Species Distribution Modelling |
| sdnet | Soft-Discretization-Based Bayesian Network Inference |
| sdPrior | Scale-Dependent Hyperpriors in Structured Additive Distributional Regression |
| sdprisk | Measures of Risk for the Compound Poisson Risk Process with Diffusion |
| SDraw | Spatially Balanced Sample Draws for Spatial Objects |
| sdtoolkit | Scenario Discovery Tools to Support Robust Decision Making |
| sdwd | Sparse Distance Weighted Discrimination |
| seacarb | Seawater Carbonate Chemistry |
| sealasso | Standard Error Adjusted Adaptive Lasso |
| searchable | Tools for Custom Searches / Subsets / Slices of Named R Objects |
| searchConsoleR | Google Search Console R Client |
| SearchTrees | Spatial Search Trees |
| seas | Seasonal analysis and graphics, especially for climatology |
| SEAsic | Score Equity Assessment- summary index computation |
| season | Seasonal analysis of health data |
| seasonal | R Interface to X-13-ARIMA-SEATS |
| seasonalview | Graphical User Interface for Seasonal Adjustment |
| seawaveQ | U.S. Geological Survey seawaveQ model |
| SEchart | SEchart |
| SecKW | The SecKW Distribution |
| SECP | Statistical Estimation of Cluster Parameters (SECP) |
| secr | Spatially Explicit Capture-Recapture |
| secrdesign | Sampling Design for Spatially Explicit Capture-Recapture |
| secrlinear | Spatially Explicit Capture-Recapture for Linear Habitats |
| secure | Sequential Co-Sparse Factor Regression |
| seeclickfixr | Access Data from the SeeClickFix Web API |
| seedy | Simulation of Evolutionary and Epidemiological Dynamics |
| seeg | Statistics for Environmental Sciences, Engineering, and Geography |
| SEER2R | reading and writing SEER*STAT data files |
| SEERaBomb | SEER and Atomic Bomb Survivor Data Analysis Tools |
| SeerMapper2010East | Supplemental U. S. 2010 Census Tract Boundaries for 23 Eastern States without Registries for 'SeerMapper' |
| SeerMapper2010Regs | Supplemental U. S. 2010 Census Tract Boundaries for 15 States with Seer Registries for 'SeerMapper' |
| SeerMapper2010West | Supplemental U.S. 2010 Census Tract Boundaries for 14 Western States without Seer Registries for 'SeerMapper' |
| SeerMapperEast | Supplemental U. S. 2000 Census Tract Boundaries for 23 Eastern States without Seer Registries |
| SeerMapperRegs | Supplemental U. S. 2000 Census Tract Boundary for 15 States with Seer Registries for 'SeerMapper' |
| SeerMapperWest | Supplemental U.S. 2000 Census Tract Boundaries for 14 Western States without Seer Registries for 'SeerMapper' |
| seewave | Sound Analysis and Synthesis |
| seg | A set of tools for measuring spatial segregation |
| SegCorr | Detecting Correlated Genomic Regions |
| segmag | Determine Event Boundaries in Event Segmentation Experiments |
| segmented | Regression Models with Break-Points / Change-Points Estimation |
| Segmentor3IsBack | A Fast Segmentation Algorithm |
| seismic | Predict Information Cascade by Self-Exciting Point Process |
| seismicRoll | Fast Rolling Functions for Seismology using Rcpp |
| sejmRP | An Information About Deputies and Votings in Polish Diet from Seventh to Eighth Term of Office |
| Sejong | KoNLP static dictionaries and Sejong project resources |
| SEL | Semiparametric elicitation |
| Select | Determines Species Probabilities Based on Functional Traits |
| selectapref | Analysis of Field and Laboratory Foraging |
| selection | Correcting Biased Estimates Under Selection |
| selectiongain | A Tool for Calculation and Optimization of the Expected Gain from Multi-Stage Selection |
| selectiveInference | Tools for Post-Selection Inference |
| selectMeta | Estimation of Weight Functions in Meta Analysis |
| selectr | Translate CSS Selectors to XPath Expressions |
| selectspm | Select Point Pattern Models Based on Minimum Contrast, AIC and Goodness of Fit |
| SeleMix | Selective Editing via Mixture Models |
| seleniumPipes | R Client Implementing the W3C WebDriver Specification |
| selfea | Select Features Reliably with Cohen's Effect Sizes |
| selfingTree | Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing |
| SelvarMix | Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis |
| sem | Structural Equation Models |
| semdiag | Structural equation modeling diagnostics |
| semds | Structural Equation Multidimensional Scaling |
| semGOF | Goodness-of-fit indexes for structural equation models |
| semiArtificial | Generator of Semi-Artificial Data |
| SemiCompRisks | Hierarchical Models for Parametric and Semi-Parametric Analyses of Semi-Competing Risks Data |
| SEMID | Identifiability of Linear Structural Equation Models |
| SemiMarkov | Multi-States Semi-Markov Models |
| SemiPar | Semiparametic Regression |
| SemiParBIVProbit | Semiparametric Copula Regression Models |
| SemiParSampleSel | Semi-Parametric Sample Selection Modelling with Continuous or Discrete Response |
| semisupKernelPCA | Kernel PCA projection, and semi-supervised variant |
| SEMModComp | Model Comparisons for SEM |
| semPlot | Path Diagrams and Visual Analysis of Various SEM Packages' Output |
| semPLS | Structural Equation Modeling Using Partial Least Squares |
| semsfa | Semiparametric Estimation of Stochastic Frontier Models |
| semTools | Useful Tools for Structural Equation Modeling |
| semtree | Recursive Partitioning for Structural Equation Models |
| semver | 'Semantic Versioning V2.0.0' Parser |
| sendmailR | send email using R |
| sendplot | Tool for sending interactive plots with tool-tip content |
| sensiPhy | Sensitivity Analysis for Comparative Methods |
| sensitivity | Global Sensitivity Analysis of Model Outputs |
| sensitivity2x2xk | Sensitivity Analysis for 2x2xk Tables in Observational Studies |
| SensitivityCaseControl | Sensitivity Analysis for Case-Control Studies |
| sensitivityfull | Sensitivity Analysis for Full Matching in Observational Studies |
| sensitivitymult | Sensitivity Analysis for Observational Studies with Multiple Outcomes |
| sensitivitymv | Sensitivity Analysis in Observational Studies |
| sensitivitymw | Sensitivity analysis using weighted M-statistics |
| sensitivityPStrat | Principal Stratification Sensitivity Analysis Functions |
| SensMixed | Analysis of Sensory and Consumer Data in a Mixed Model Framework |
| SensoMineR | Sensory data analysis with R |
| sensors4plumes | Test and Optimise Sampling Designs Based on Plume Simulations |
| sensory | Simultaneous Model-Based Clustering and Imputation via a Progressive Expectation-Maximization Algorithm |
| sensR | Thurstonian Models for Sensory Discrimination |
| SenSrivastava | Datasets from Sen & Srivastava |
| SensusR | Sensus Analytics |
| sentimentr | Calculate Text Polarity Sentiment |
| sEparaTe | Maximum Likelihood Estimation and Likelihood Ratio Test Functions for Separable Variance-Covariance Structures |
| separationplot | Separation Plots |
| SeqAlloc | Sequential Allocation for Prospective Experiments |
| seqCBS | CN Profiling using Sequencing and CBS |
| seqDesign | Simulation and Group Sequential Monitoring of Randomized Two-Stage Treatment Efficacy Trials with Time-to-Event Endpoints |
| SeqFeatR | A Tool to Associate FASTA Sequences and Features |
| SeqGrapheR | Simple GUI for Graph Based Visualization of Cluster of DNA Sequence Reads |
| seqHMM | Hidden Markov Models for Life Sequences and Other Multivariate, Multichannel Categorical Time Series |
| seqinr | Biological Sequences Retrieval and Analysis |
| SeqMADE | Network Module-Based Model in the Differential Expression Analysis for RNA-Seq |
| seqMeta | Meta-Analysis of Region-Based Tests of Rare DNA Variants |
| seqminer | Efficiently Read Sequence Data (VCF Format, BCF Format and METAL Format) into R |
| seqmon | Group Sequential Design Class for Clinical Trials |
| seqPERM | Generates a permutation matrix based upon a sequence |
| seqRFLP | Simulation and visualization of restriction enzyme cutting pattern from DNA sequences |
| seqtest | Sequential Triangular Test |
| SequenceAnalysis | Sequence Analysis |
| sequences | Generic and Biological Sequences |
| Sequential | Exact Sequential Analysis for Poisson and Binomial Data |
| sequenza | Copy Number Estimation from Tumor Genome Sequencing Data |
| sequoia | Pedigree Inference from SNPs |
| serial | The Serial Interface Package |
| seriation | Infrastructure for Ordering Objects Using Seriation |
| seroincidence | Estimating Infection Rates from Serological Data |
| servr | A Simple HTTP Server to Serve Static Files or Dynamic Documents |
| sesem | Spatially Explicit Structural Equation Modeling |
| session | Functions for interacting with, saving and restoring R sessions |
| SetMethods | Functions for Set-Theoretic Multi-Method Research and Advanced QCA |
| SETPath | Spiked Eigenvalue Test for Pathway data |
| SetRank | Advanced Gene Set Enrichment Analysis |
| setRNG | Set (Normal) Random Number Generator and Seed |
| sets | Sets, Generalized Sets, Customizable Sets and Intervals |
| setter | Mutators that Work with Pipes |
| SetTest | Group Testing Procedures for Signal Detection and Goodness-of-Fit |
| settings | Software Option Settings Manager for R |
| severity | Mayo's Post-data Severity Evaluation |
| sExtinct | Calculates the historic date of extinction given a series of sighting events |
| sf | Simple Features for R |
| sfa | Stochastic Frontier Analysis |
| sfc | Substance Flow Computation |
| sfdct | Constrained Triangulation for Simple Features |
| sFFLHD | Sequential Full Factorial-Based Latin Hypercube Design |
| sfinx | Straightforward Filtering Index for AP-MS Data Analysis (SFINX) |
| sfsmisc | Utilities from "Seminar fuer Statistik" ETH Zurich |
| sft | Functions for Systems Factorial Technology Analysis of Data |
| SGCS | Spatial Graph Based Clustering Summaries for Spatial Point Patterns |
| sgd | Stochastic Gradient Descent for Scalable Estimation |
| sgee | Stagewise Generalized Estimating Equations |
| sgeostat | An Object-Oriented Framework for Geostatistical Modeling in S+ |
| SGL | Fit a GLM (or cox model) with a combination of lasso and group lasso regularization |
| sglasso | Lasso Method for RCON(V,E) Models |
| sglOptim | Generic Sparse Group Lasso Solver |
| sglr | An R package for power and boundary calculations in pre-licensure vaccine trials using a sequential generalized likelihood ratio test |
| sgof | Multiple Hypothesis Testing |
| SGP | Student Growth Percentiles & Percentile Growth Trajectories |
| sGPCA | Sparse Generalized Principal Component Analysis |
| SGPdata | Exemplar Data Sets for SGP Analyses |
| sgPLS | Sparse Group Partial Least Square Methods |
| sgr | Sample Generation by Replacement |
| sgRSEA | Enrichment Analysis of CRISPR/Cas9 Knockout Screen Data |
| sgt | Skewed Generalized T Distribution Tree |
| shades | Simple Colour Manipulation |
| shadow | Geometric Shadow Calculations |
| shallot | Random Partition Distribution Indexed by Pairwise Information |
| shape | Functions for plotting graphical shapes, colors |
| ShapeChange | Change-Point Estimation using Shape-Restricted Splines |
| shapefiles | Read and Write ESRI Shapefiles |
| ShapePattern | Tools for Analyzing Planar Shape and Associated Patterns |
| shapeR | Collection and Analysis of Otolith Shape Data |
| shapes | Statistical Shape Analysis |
| ShapeSelectForest | Shape Selection for Landsat Time Series of Forest Dynamics |
| SharpeR | Statistical Significance of the Sharpe Ratio |
| sharpeRratio | Moment-Free Estimation of Sharpe Ratios |
| sharpshootR | A Soil Survey Toolkit |
| sharx | Models and Data Sets for the Study of Species-Area Relationships |
| shazam | Immunoglobulin Somatic Hypermutation Analysis |
| SHELF | Tools to Support the Sheffield Elicitation Framework |
| shiny | Web Application Framework for R |
| shinyAce | Ace Editor Bindings for Shiny |
| shinybootstrap2 | Bootstrap 2 Web Components for Use with Shiny |
| shinyBS | Twitter Bootstrap Components for Shiny |
| shinycssloaders | Add CSS Loading Animations to 'shiny' Outputs |
| shinydashboard | Create Dashboards with 'Shiny' |
| shinyDND | Shiny Drag-n-Drop |
| shinyFeedback | Displays User Feedback Next to Shiny Inputs |
| shinyFiles | A Server-Side File System Viewer for Shiny |
| shinyHeatmaply | Deploy 'heatmaply' using 'shiny' |
| ShinyItemAnalysis | Test and Item Analysis via Shiny |
| shinyjqui | 'jQuery UI' Interactions and Effects for Shiny |
| shinyjs | Easily Improve the User Experience of Your Shiny Apps in Seconds |
| shinyLP | Bootstrap Landing Home Pages for Shiny Applications |
| shinymaterial | Implement Material Design in Shiny Applications |
| shinyRGL | Shiny Wrappers for RGL |
| shinyShortcut | Creates an Executable Shortcut for Shiny Applications |
| shinystan | Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models |
| ShinyTester | Functions to Minimize Bonehead Moves While Working with 'shiny' |
| shinythemes | Themes for Shiny |
| shinyTime | A Time Input Widget for Shiny |
| shinytoastr | Notifications from 'Shiny' |
| shinyTree | jsTree Bindings for Shiny |
| shinyWidgets | Custom Inputs Widgets for Shiny |
| SHIP | SHrinkage covariance Incorporating Prior knowledge |
| SHLR | Shared Haplotype Length Regression |
| shock | Slope Heuristic for Block-Diagonal Covariance Selection in High Dimensional Gaussian Graphical Models |
| shopifyr | An R Interface to the Shopify API |
| shotGroups | Analyze Shot Group Data |
| showtext | Using Fonts More Easily in R Graphs |
| showtextdb | Font Files for the 'showtext' Package |
| shp2graph | Convert a SpatialLinesDataFrame object to a "igraph-class" object |
| shrink | Global, Parameterwise and Joint Shrinkage Factor Estimation |
| ShrinkCovMat | Shrinkage Covariance Matrix Estimators |
| shuffle | The Shuffle Estimator for Explainable Variance |
| siar | Stable Isotope Analysis in R |
| SIBER | Stable Isotope Bayesian Ellipses in R |
| sicegar | Analysis of Single-Cell Viral Growth Curves |
| SID | Structural Intervention Distance |
| sideChannelAttack | Side Channel Attack |
| SIDES | Subgroup Identification Based on Differential Effect Search |
| sidier | Substitution and Indel Distances to Infer Evolutionary Relationships |
| sidrar | An Interface to IBGE's SIDRA API |
| sievetest | Sieve test reporting functions |
| sig | Print Function Signatures |
| sigclust | Statistical Significance of Clustering |
| SightabilityModel | Wildlife Sightability Modeling |
| sigloc | Signal Location Estimation |
| sigmoid | Sigmoid Functions for Machine Learning |
| signal | Signal Processing |
| signalHsmm | Predict Presence of Signal Peptides |
| SignifReg | Significant Variable Selection in Linear Regression |
| signmedian.test | Perform Exact Sign Test and Asymptotic Sign Test in Large Samples |
| SigOptR | R API Wrapper for SigOpt |
| sigora | Signature Overrepresentation Analysis |
| sigr | Format Significance Summaries for Reports |
| SigTree | Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree |
| SII | Calculate ANSI S3.5-1997 Speech Intelligibility Index |
| Sim.DiffProc | Simulation of Diffusion Processes |
| simba | A Collection of functions for similarity analysis of vegetation data |
| simboot | Simultaneous Inference for Diversity Indices |
| simcausal | Simulating Longitudinal Data with Causal Inference Applications |
| SimComp | Simultaneous Comparisons for Multiple Endpoints |
| SimCorMultRes | Simulates Correlated Multinomial Responses |
| simctest | Safe Implementation of Monte Carlo Tests |
| SimDesign | Structure for Organizing Monte Carlo Simulation Designs |
| simecol | Simulation of Ecological (and Other) Dynamic Systems |
| simEd | Simulation Education |
| simest | Constrained Single Index Model Estimation |
| simex | SIMEX- and MCSIMEX-Algorithm for measurement error models |
| simexaft | simexaft |
| simFrame | Simulation framework |
| simglm | Simulate Models Based on the Generalized Linear Model |
| SimHaz | Simulated Survival and Hazard Analysis for Time-Dependent Exposure |
| SimilarityMeasures | Trajectory Similarity Measures |
| Simile | Interact with Simile Models |
| SimInf | A Framework for Data-Driven Stochastic Disease Spread Simulations |
| simLife | Simulation of Fatigue Lifetimes |
| simmer | Discrete-Event Simulation for R |
| simmer.plot | Plotting Methods for 'simmer' |
| simMP | Simulate Somatic Mutations in Cancer Genomes from Mutational Processes |
| simmr | A Stable Isotope Mixing Model |
| SIMMS | Subnetwork Integration for Multi-Modal Signatures |
| simMSM | Simulation of Event Histories for Multi-State Models |
| simone | Statistical Inference for MOdular NEtworks (SIMoNe) |
| simPATHy | A Method for Simulating Data from Perturbed Biological Pathways |
| simPH | Tools for Simulating and Plotting Quantities of Interest Estimated from Cox Proportional Hazards Models |
| SimPhe | Tools to Simulate Phenotype(s) with Epistatic Interaction |
| simpleboot | Simple Bootstrap Routines |
| simplegraph | Simple Graph Data Types and Basic Algorithms |
| simpleNeural | An Easy to Use Multilayer Perceptron |
| simpleRCache | Simple R Cache |
| simpleSetup | Set Up R Source Code Files for Use on Multiple Machines |
| SimpleTable | Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding |
| simplexreg | Regression Analysis of Proportional Data Using Simplex Distribution |
| SimplicialCubature | Integration of Functions Over Simplices |
| simplr | Basic Symbolic Expression Simplification |
| simPop | Simulation of Synthetic Populations for Survey Data Considering Auxiliary Information |
| Simpsons | Detecting Simpson's Paradox |
| simputation | Simple Imputation |
| simr | Power Analysis for Generalised Linear Mixed Models by Simulation |
| SimRAD | Simulations to Predict the Number of RAD and GBS Loci |
| SimReg | Similarity Regression |
| simrel | Linear Model Data Simulation and Design of Computer Experiments |
| SiMRiv | Individual-Based, Spatially-Explicit Simulation and Analysis of Multi-State Movements in River Networks and Heterogeneous Landscapes |
| simsalapar | Tools for Simulation Studies in Parallel |
| SimSCRPiecewise | 'Simulates Univariate and Semi-Competing Risks Data Given Covariates and Piecewise Exponential Baseline Hazards' |
| simsem | SIMulated Structural Equation Modeling |
| SimSeq | Nonparametric Simulation of RNA-Seq Data |
| simstudy | Simulation of Study Data |
| simSummary | Simulation summary |
| simTool | Conduct Simulation Studies with a Minimal Amount of Source Code |
| SimuChemPC | Simulation process of 4 selection methods in predicting chemical potent compounds |
| simulator | An Engine for Running Simulations |
| simule | A Constrained L1 Minimization Approach for Estimating Multiple Sparse Gaussian or Nonparanormal Graphical Models |
| SimultAnR | Correspondence and Simultaneous Analysis |
| SIN | A SINful Approach to Selection of Gaussian Graphical Markov Models |
| sinaplot | An Enhanced Chart for Simple and Truthful Representation of Single Observations over Multiple Classes |
| sinew | Create 'roxygen2' Skeleton with Information from Function Script |
| sinib | Sum of Independent Non-Identical Binomial Random Variables |
| SinIW | The SinIW Distribution |
| siplab | Spatial Individual-Plant Modelling |
| sirad | Functions for Calculating Daily Solar Radiation and Evapotranspiration |
| siRSM | Single-Index Response Surface Models |
| sirt | Supplementary Item Response Theory Models |
| SIS | Sure Independence Screening |
| sisal | Sequential Input Selection Algorithm |
| SISIR | Sparse Interval Sliced Inverse Regression |
| sisus | SISUS: Stable Isotope Sourcing using Sampling |
| sisVIVE | Some Invalid Some Valid Instrumental Variables Estimator |
| sitar | Super Imposition by Translation and Rotation Growth Curve Analysis |
| sitmo | Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files |
| sitools | Format a number to a string with SI prefix |
| sitree | Single Tree Simulator |
| sivipm | Sensitivity Indices with Dependent Inputs |
| SixSigma | Six Sigma Tools for Quality Control and Improvement |
| SizeEstimation | Estimating the Sizes of Populations at Risk of HIV Infection from Multiple Data Sources Using a Bayesian Hierarchical Model |
| sizeMat | Estimate Size at Sexual Maturity |
| SiZer | SiZer: Significant Zero Crossings |
| sjdbc | JDBC Driver Interface |
| sjmisc | Data Transformation and Labelled Data Utility Functions |
| sjPlot | Data Visualization for Statistics in Social Science |
| sjstats | Collection of Convenient Functions for Common Statistical Computations |
| SKAT | SNP-Set (Sequence) Kernel Association Test |
| skda | Sparse (Multicategory) Kernel Discriminant Analysis |
| skeleSim | Genetic Simulation Engine |
| skeletor | An R Package Skeleton Generator |
| skellam | Densities and Sampling for the Skellam Distribution |
| SkewHyperbolic | The Skew Hyperbolic Student t-Distribution |
| skewt | The Skewed Student-t Distribution |
| Skillings.Mack | The Skillings-Mack Test Statistic for Block Designs with Missing Observations |
| skm | Selective k-Means |
| skmeans | Spherical k-Means Clustering |
| Sky | Canopy Openness Analyzer Package |
| SkyWatchr | Wrapper for the SkyWatch API |
| sla | Two-Group Straight Line ANCOVA |
| slackr | Send Messages, Images, R Objects and Files to 'Slack' Channels/Users |
| slam | Sparse Lightweight Arrays and Matrices |
| SLC | Slope and level change |
| sld | Estimation and Use of the Quantile-Based Skew Logistic Distribution |
| SLDAssay | Software for Analyzing Limiting Dilution Assays |
| sleekts | 4253H, Twice Smoothing |
| Sleuth2 | Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd Ed)" |
| Sleuth3 | Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd Ed)" |
| slfm | Tools for Fitting Sparse Latent Factor Model |
| SLHD | Maximin-Distance (Sliced) Latin Hypercube Designs |
| slickR | Create Interactive Carousels with the JavaScript 'Slick' Library |
| slim | Singular Linear Models for Longitudinal Data |
| slimrec | Sparse Linear Method to Predict Ratings and Top-N Recommendations |
| SLOPE | Sorted L1 Penalized Estimation (SLOPE) |
| slp | Discrete Prolate Spheroidal (Slepian) Sequence Regression Smoothers |
| sm | Smoothing methods for nonparametric regression and density estimation |
| smaa | Stochastic Multi-Criteria Acceptability Analysis |
| smac | Sparse Multi-category Angle-Based Large-Margin Classifiers |
| smacof | Multidimensional Scaling |
| smacpod | Statistical Methods for the Analysis of Case-Control Point Data |
| smallarea | Fits a Fay Herriot Model |
| smam | Statistical Modeling of Animal Movements |
| smapr | Acquisition and Processing of NASA Soil Moisture Active-Passive (SMAP) Data |
| smart | Sparse Multivariate Analysis via Rank Transformation |
| SmarterPoland | Tools for Accessing Various Datasets Developed by the Foundation SmarterPoland.pl |
| SmartSifter | Online Unsupervised Outlier Detection Using Finite Mixtures with Discounting Learning Algorithms |
| SmartSVA | Implementation of Smart SVA |
| smatr | (Standardised) Major Axis Estimation and Testing Routines |
| smbinning | Optimal Binning for Scoring Modeling |
| SMC | Sequential Monte Carlo (SMC) Algorithm |
| smcfcs | Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification |
| smco | A simple Monte Carlo optimizer using adaptive coordinate sampling |
| SMCP | Smoothed minimax concave penalization (SMCP) method for genome-wide association studies |
| SMCRM | Data Sets for Statistical Methods in Customer Relationship Management by Kumar and Petersen (2012) |
| smcure | Fit Semiparametric Mixture Cure Models |
| smcUtils | Utility functions for sequential Monte Carlo |
| smdata | Data to accompany Smithson & Merkle, 2013 |
| smdc | Document Similarity |
| smds | Symbolic Multidimensional Scaling |
| sme | Smoothing-splines Mixed-effects Models |
| smerc | Statistical Methods for Regional Counts |
| SMFI5 | R functions and data from Chapter 5 of 'Statistical Methods for Financial Engineering' |
| smfsb | SMfSB 2e: Stochastic Modelling for Systems Biology, second edition |
| SMIR | Companion to Statistical Modelling in R |
| smirnov | Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book |
| Smisc | Sego Miscellaneous |
| SmithWilsonYieldCurve | Smith-Wilson Yield Curve Construction |
| SML | Statistical Machine Learning |
| SMLoutliers | Outlier Detection Using Statistical and Machine Learning Methods |
| SMMA | Soft Maximin Estimation for Large Scale Array-Tensor Models |
| SMNCensReg | Fitting Univariate Censored Regression Model Under the Family of Scale Mixture of Normal Distributions |
| smnet | Smoothing for Stream Network Data |
| smoof | Single and Multi-Objective Optimization Test Functions |
| smooth | Forecasting Using Smoothing Functions |
| smoothAPC | Smoothing of Two-Dimensional Demographic Data, Optionally Taking into Account Period and Cohort Effects |
| smoother | Functions Relating to the Smoothing of Numerical Data |
| SmoothHazard | Estimation of Smooth Hazard Models for Interval-Censored Data with Applications to Survival and Illness-Death Models |
| smoothHR | Smooth Hazard Ratio Curves Taking a Reference Value |
| smoothie | Two-dimensional Field Smoothing |
| smoothmest | Smoothed M-estimators for 1-dimensional location |
| smoothSurv | Survival Regression with Smoothed Error Distribution |
| smoothtail | Smooth Estimation of GPD Shape Parameter |
| smotefamily | A Collection of Oversampling Techniques for Class Imbalance Problem Based on SMOTE |
| SMPracticals | Practicals for use with Davison (2003) Statistical Models |
| SMR | Externally Studentized Midrange Distribution |
| sms | Spatial Microsimulation |
| smss | Datasets for Agresti and Finlay's "Statistical Methods for the Social Sciences" |
| SMVar | Structural Model for variances |
| sn | The Skew-Normal and Related Distributions, such as the Skew-t |
| sna | Tools for Social Network Analysis |
| snakecase | Convert Strings into any Case |
| SnakeCharmR | R and Python Integration |
| snapshot | Gadget N-body cosmological simulation code snapshot I/O utilities |
| SNFtool | Similarity Network Fusion |
| snht | Standard Normal Homogeneity Test |
| snipEM | Snipping methods for robust estimation and clustering |
| snn | Stabilized Nearest Neighbor Classifier |
| snow | Simple Network of Workstations |
| SnowballC | Snowball stemmers based on the C libstemmer UTF-8 library |
| snowboot | Bootstrap Methods for Network Inference |
| snowfall | Easier cluster computing (based on snow) |
| snowFT | Fault Tolerant Simple Network of Workstations |
| snp.plotter | snp.plotter |
| snpar | Supplementary Non-parametric Statistics Methods |
| SNPassoc | SNPs-based whole genome association studies |
| snpEnrichment | SNPs Enrichment Analysis |
| snplist | Tools to Create Gene Sets |
| sNPLS | NPLS Regression with L1 Penalization |
| SNPmaxsel | Maximally selected statistics for SNP data |
| SNPMClust | Bivariate Gaussian Genotype Clustering and Calling for Illumina Microarrays |
| snpRF | Random Forest for SNPs to Prevent X-chromosome SNP Importance Bias |
| snpStatsWriter | Flexible writing of snpStats objects to flat files |
| SNPtools | Accessing, subsetting and plotting mouse SNPs |
| sns | Stochastic Newton Sampler (SNS) |
| SNscan | Scan Statistics in Social Networks |
| SNSequate | Standard and Nonstandard Statistical Models and Methods for Test Equating |
| SOAR | Memory management in R by delayed assignments |
| soc.ca | Specific Correspondence Analysis for the Social Sciences |
| SocialMediaLab | Tools for Collecting Social Media Data and Generating Networks for Analysis |
| SocialMediaMineR | A Social Media Search and Analytic Tool |
| SocialNetworks | Generates social networks based on distance |
| SocialPosition | Social Position Indicators Construction Toolbox |
| SOD | SOD for multidimensional scaling |
| SoDA | Functions and Examples for "Software for Data Analysis" |
| sodavis | SODA: Main and Interaction Effects Selection for Discriminant Analysis and Logistic Regression |
| SODC | Optimal Discriminant Clustering(ODC) and Sparse Optimal Discriminant Clustering(SODC) |
| sodium | A Modern and Easy-to-Use Crypto Library |
| sofa | Connector to 'CouchDB' |
| Sofi | Interfaz interactiva con fines didacticos |
| SOFIA | Making Sophisticated and Aesthetical Figures in R |
| softclassval | Soft Classification Performance Measures |
| SoftClustering | Soft Clustering Algorithms |
| softImpute | Matrix Completion via Iterative Soft-Thresholded SVD |
| softmaxreg | Training Multi-Layer Neural Network for Softmax Regression and Classification |
| SOIL | Sparsity Oriented Importance Learning |
| soil.spec | Soil Spectroscopy Tools and Reference Models |
| soilcarbon | Tools to Analyze Soil Carbon Database Created by Powell Center Working Group |
| soilDB | Soil Database Interface |
| soilphysics | Soil Physical Analysis |
| soilprofile | A package to consistently represent soil properties along a soil profile |
| SoilR | Models of Soil Organic Matter Decomposition |
| soiltexture | Functions for Soil Texture Plot, Classification and Transformation |
| soilwater | Implementation of Parametric Formulas for Soil Water Retention or Conductivity Curve |
| solaR | Radiation and Photovoltaic Systems |
| solarius | An R Interface to SOLAR |
| solarPos | Solar Position Algorithm for Solar Radiation Applications |
| solidearthtide | Solid Earth Tide Computation |
| SOLOMON | Parentage analysis |
| solr | General Purpose R Interface to Solr |
| solrium | General Purpose R Interface to 'Solr' |
| solvebio | The Official SolveBio API Client for R |
| som | Self-Organizing Map |
| som.nn | Topological k-NN Classifier Based on Self-Organising Maps |
| soma | General-Purpose Optimisation With the Self-Organising Migrating Algorithm |
| SOMbrero | SOM Bound to Realize Euclidean and Relational Outputs |
| somebm | some Brownian motions simulation functions |
| someKfwer | Controlling the Generalized Familywise Error Rate |
| someMTP | Some Multiple Testing Procedures |
| sommer | Solving Mixed Model Equations in R |
| somplot | Visualisation of hexagonal Kohonen maps |
| sonar | Fundamental Formulas for Sonar |
| sonicLength | Estimating Abundance of Clones from DNA fragmentation data |
| sonify | Data Sonification - Turning Data into Sound |
| soobench | Single Objective Optimization Benchmark Functions |
| sophisthse | Load Russian Economic Indicators from the Archive of Economic and Social Data |
| SOPIE | Non-Parametric Estimation of the Off-Pulse Interval of a Pulsar |
| soql | Helps Make Socrata Open Data API Calls |
| SOR | Estimation using Sequential Offsetted Regression |
| SortableHTMLTables | Turns a data frame into an HTML file containing a sortable table |
| sortinghat | sortinghat |
| sorvi | Finnish Open Government Data Toolkit |
| sos | Search Contributed R Packages, Sort by Package |
| sos4R | An R client for the OGC Sensor Observation Service |
| sotkanet | Sotkanet Open Data Access and Analysis |
| sotu | United States Presidential State of the Union Addresses |
| sound | A Sound Interface for R |
| soundecology | Soundscape Ecology |
| SoundexBR | Phonetic-Coding for Portuguese |
| SOUP | Stochastic Ordering Using Permutations (and Pairwise Comparisons) |
| source.gist | Read R code from a GitHub Gist |
| sourceR | Fits a Non-Parametric Bayesian Source Attribution Model |
| sourcetools | Tools for Reading, Tokenizing and Parsing R Code |
| SoyNAM | Soybean Nested Association Mapping Dataset |
| sp | Classes and Methods for Spatial Data |
| sp23design | Design and Simulation of seamless Phase II-III Clinical Trials |
| sp500SlidingWindow | Sliding Window Investment Analysis |
| spa | Implements The Sequential Predictions Algorithm |
| SPA3G | SPA3G: R package for the method of Li and Cui (2012) |
| spaa | SPecies Association Analysis |
| SpaCCr | Spatial Convex Clustering |
| space | Sparse PArtial Correlation Estimation |
| SPACECAP | A Program to Estimate Animal Abundance and Density using Bayesian Spatially-Explicit Capture-Recapture Models |
| spaceExt | Extension of SPACE |
| spacejam | Sparse conditional graph estimation with joint additive models |
| spacetime | Classes and Methods for Spatio-Temporal Data |
| spacodiR | Spatial and Phylogenetic Analysis of Community Diversity |
| spacom | Spatially Weighted Context Data for Multilevel Modelling |
| spacyr | R Wrapper to the spaCy NLP Library |
| SPADAR | Spherical Projections of Astronomical Data |
| spAddins | A Set of RStudio Addins |
| SpadeR | Species-Richness Prediction and Diversity Estimation with R |
| SpaDES | Develop and Run Spatially Explicit Discrete Event Simulation Models |
| spaero | Software for Project AERO |
| spam | SPArse Matrix |
| spaMM | Mixed-Effect Models, Particularly Spatial Models |
| spanel | Spatial Panel Data Models |
| spant | MR Spectroscopy Analysis Tools |
| SPAr | Perform rare variants association analysis based on summation of partition approaches |
| sparc | Semiparametric Generalized Linear Models |
| sparcl | Perform sparse hierarchical clustering and sparse k-means clustering |
| spareserver | Client Side Load Balancing |
| spark | Sparklines in the 'R' Terminal |
| spark.sas7bdat | Read in 'SAS' Data ('.sas7bdat' Files) into 'Apache Spark' |
| sparkline | 'jQuery' Sparkline 'htmlwidget' |
| sparklyr | R Interface to Apache Spark |
| sparkTable | Sparklines and Graphical Tables for TeX and HTML |
| sparktex | Generate LaTeX sparklines in R |
| sparkwarc | Load WARC Files into Apache Spark |
| SPARQL | SPARQL client |
| sparr | SPAtial Relative Risk |
| sparseBC | Sparse Biclustering of Transposable Data |
| sparsebn | Learning Sparse Bayesian Networks from High-Dimensional Data |
| sparsebnUtils | Utilities for Learning Sparse Bayesian Networks |
| SparseDC | Implementation of SparseDC Algorithm |
| SparseFactorAnalysis | Scaling Count and Binary Data with Sparse Factor Analysis |
| sparseFLMM | Functional Linear Mixed Models for Irregularly or Sparsely Sampled Data |
| SparseGrid | Sparse grid integration in R |
| sparseHessianFD | Numerical Estimation of Sparse Hessians |
| sparseLDA | Sparse Discriminant Analysis |
| SparseLearner | Sparse Learning Algorithms Using a LASSO-Type Penalty for Coefficient Estimation and Model Prediction |
| sparseLTSEigen | RcppEigen back end for sparse least trimmed squares regression |
| SparseM | Sparse Linear Algebra |
| sparseMVN | Multivariate Normal Functions for Sparse Covariance and Precision Matrices |
| sparsenet | Fit sparse linear regression models via nonconvex optimization |
| sparsepp | 'Rcpp' Interface to 'sparsepp' |
| sparsereg | Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data |
| sparseSEM | Sparse-aware Maximum Likelihood for Structural Equation Models |
| sparsestep | SparseStep Regression |
| sparsesvd | Sparse Truncated Singular Value Decomposition (from 'SVDLIBC') |
| sparseSVM | Solution Paths of Sparse Linear Support Vector Machine with Lasso or ELastic-Net Regularization |
| SparseTSCGM | Sparse Time Series Chain Graphical Models |
| sparsevar | A Package for Sparse VAR/VECM Estimation |
| spartan | Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan |
| spass | Study Planning and Adaptation of Sample Size |
| spatcounts | Spatial count regression |
| spate | Spatio-Temporal Modeling of Large Data Using a Spectral SPDE Approach |
| SPAtest | Score Test Based on Saddlepoint Approximation |
| spatgraphs | Graph Edge Computations for Spatial Point Patterns |
| spatial | Functions for Kriging and Point Pattern Analysis |
| spatial.gev.bma | Hierarchical spatial generalized extreme value (GEV) modeling with Bayesian Model Averaging (BMA) |
| spatial.tools | R functions for working with spatial data |
| SpatialAcc | Spatial Accessibility Measures |
| spatialClust | Spatial Clustering using Fuzzy Geographically Weighted Clustering |
| spatialCovariance | Computation of Spatial Covariance Matrices for Data on Rectangles |
| spatialEco | Spatial Analysis and Modelling |
| SpatialEpi | Methods and Data for Spatial Epidemiology |
| SpatialEpiApp | A Shiny Web Application for the Analysis of Spatial and Spatio-Temporal Disease Data |
| SpatialExtremes | Modelling Spatial Extremes |
| spatialfil | Application of 2D Convolution Kernel Filters to Matrices or 3D Arrays |
| spatialnbda | Performs spatial NBDA in a Bayesian context |
| SpatialNP | Multivariate nonparametric methods based on spatial signs and ranks |
| SpatialPack | Package for analysis of spatial data |
| SpatialPosition | Spatial Position Models |
| spatialprobit | Spatial Probit Models |
| spatialsegregation | Segregation Measures for Multitype Spatial Point Patterns |
| spatialTailDep | Estimation of spatial tail dependence models |
| SpatialTools | Tools for Spatial Data Analysis |
| SpatialVx | Spatial Forecast Verification |
| SpaTimeClus | Model-Based Clustering of Spatio-Temporal Data |
| SpatioTemporal | Spatio-Temporal Model Estimation |
| SpatMCA | Regularized Spatial Maximum Covariance Analysis |
| SpatPCA | Regularized Principal Component Analysis for Spatial Data |
| SpATS | Spatial Analysis of Field Trials with Splines |
| spatstat | Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests |
| spatstat.local | Extension to 'spatstat' for Local Composite Likelihood |
| spatstat.utils | Utility Functions for 'spatstat' |
| spatsurv | Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models |
| spbabel | Convert Spatial Data Using Tidy Tables |
| spBayes | Univariate and Multivariate Spatial-Temporal Modeling |
| spBayesSurv | Bayesian Modeling and Analysis of Spatially Correlated Survival Data |
| spc | Statistical Process Control – Collection of Some Useful Functions |
| spcadjust | Functions for Calibrating Control Charts |
| SPCALDA | A New Reduced-Rank Linear Discriminant Analysis Method |
| spcosa | Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata |
| spcov | Sparse Estimation of a Covariance Matrix |
| spcr | Sparse Principal Component Regression |
| spd | Semi Parametric Distribution |
| spdep | Spatial Dependence: Weighting Schemes, Statistics and Models |
| spdownscale | Spatial Downscaling Using Bias Correction Approach |
| spdplyr | Data Manipulation Verbs for the Spatial Classes |
| spduration | Split-Population Duration (Cure) Regression |
| spdynmod | Spatio-Dynamic Wetland Plant Communities Model |
| spe | Stochastic Proximity Embedding |
| speaq | Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations |
| spec | A Data Specification Format and Interface |
| speccalt | Alternative spectral clustering, with automatic estimation of k |
| SpecHelpers | Spectroscopy Related Utilities |
| SPECIES | Statistical package for species richness estimation |
| speciesgeocodeR | Prepare Species Distributions for the Use in Phylogenetic Analyses |
| SpeciesMix | Fit Mixtures of Archetype Species |
| specificity | Specificity of personality trait-outcome (or trait-trait) associations |
| specmine | Metabolomics and Spectral Data Analysis and Mining |
| SpecsVerification | Forecast Verification Routines for Ensemble Forecasts of Weather and Climate |
| spectral | Common Methods of Spectral Data Analysis |
| spectral.methods | Singular Spectrum Analysis (SSA) Tools for Time Series Analysis |
| spectralGP | Approximate Gaussian Processes Using the Fourier Basis |
| SpectralMap | Diffusion Map and Spectral Map |
| spectrino | Spectra Visualization, Organizer and Data Preparation |
| SPEDInstabR | Estimation of the Relative Importance of Factors Affecting Species Distribution Based on Stability Concept |
| speedglm | Fitting Linear and Generalized Linear Models to Large Data Sets |
| spef | Semiparametric Estimating Functions |
| speff2trial | Semiparametric efficient estimation for a two-sample treatment effect |
| SPEI | Calculation of the Standardised Precipitation-Evapotranspiration Index |
| spellcheckr | Correct the Spelling of a Given Word in the English Language |
| sperich | Auxiliary Functions to Estimate Centers of Biodiversity |
| sperrorest | Perform Spatial Error Estimation and Variable Importance in Parallel |
| spex | Spatial Extent as Polygons with Projection |
| spfrontier | Spatial Stochastic Frontier Models |
| spftir | Pre-Processing and Analysis of Mid-Infrared Spectral Region |
| spgrass6 | Interface Between GRASS 6+ Geographical Information System and R |
| spgs | Statistical Patterns in Genomic Sequences |
| spgwr | Geographically Weighted Regression |
| sphereplot | Spherical plotting |
| SphericalCubature | Numerical Integration over Spheres and Balls in n-Dimensions; Multivariate Polar Coordinates |
| SphericalK | Spherical K-Function |
| sphet | Estimation of spatial autoregressive models with and without heteroskedastic innovations |
| spi | Compute SPI index |
| SPIAssay | A Genetic-Based Assay for the Identification of Cell Lines |
| spiders | Fits Predator Preferences Model |
| SPIGA | Compute SPI Index using the Methods Genetic Algorithm and Maximum Likelihood |
| spikes | Detecting Election Fraud from Irregularities in Vote-Share Distributions |
| spikeslab | Prediction and variable selection using spike and slab regression |
| spikeSlabGAM | Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models |
| SPIn | Simulation-efficient Shortest Probability Intervals |
| spind | Spatial Methods and Indices |
| spinyReg | Sparse Generative Model and Its EM Algorithm |
| splancs | Spatial and Space-Time Point Pattern Analysis |
| splines2 | Regression Spline Functions and Classes Too |
| splitfngr | Combined Evaluation and Split Access of Functions |
| splithalf | Calculate Task Split Half Reliability Estimates |
| splitstackshape | Stack and Reshape Datasets After Splitting Concatenated Values |
| splm | Econometric Models for Spatial Panel Data |
| spls | Sparse Partial Least Squares (SPLS) Regression and Classification |
| splus2R | Supplemental S-PLUS Functionality in R |
| splusTimeDate | Times and Dates from S-PLUS |
| splusTimeSeries | Time Series from S-PLUS |
| spm12r | Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging' |
| spMC | Continuous-Lag Spatial Markov Chains |
| SPmlficmcm | Semiparametric Maximum Likelihood Method for Interactions Gene-Environment in Case-Mother Control-Mother Designs |
| spmoran | Moran's Eigenvector-Based Spatial Regression Models |
| spnet | Plotting (Social) Networks on Maps |
| spocc | Interface to Species Occurrence Data Sources |
| SPODT | Spatial Oblique Decision Tree |
| spongecake | Transform a Movie into a Synthetic Picture |
| sporm | Semiparametric proportional odds rate model |
| SportsAnalytics | Infrastructure for Sports Analytics |
| SPOT | Sequential Parameter Optimization Toolbox |
| SPPcomb | Combining Different Spatial Datasets in Cancer Risk Estimation |
| sppmix | Modeling Spatial Poisson and Related Point Processes |
| spray | Sparse Arrays and Multivariate Polynomials |
| SPREDA | Statistical Package for Reliability Data Analysis |
| SPreFuGED | Selecting a Predictive Function for a Given Gene Expression Data |
| sprex | Calculate Species Richness and Extrapolation Metrics |
| sprint | Simple Parallel R INTerface |
| sprinter | Framework for Screening Prognostic Interactions |
| sprm | Sparse and Non-Sparse Partial Robust M Regression and Classification |
| sprsmdl | Sparse modeling toolkit |
| SPRT | Wald's Sequential Probability Ratio Test |
| spsann | Optimization of Sample Configurations using Spatial Simulated Annealing |
| spselect | Selecting Spatial Scale of Covariates in Regression Models |
| spsi | Shape-Preserving Uni-Variate and Bi-Variate Spline Interpolation |
| SPSL | Site Percolation on Square Lattice (SPSL) |
| spsurvey | Spatial Survey Design and Analysis |
| spt | Sierpinski Pedal Triangle |
| spTDyn | Spatially Varying and Spatio-Temporal Dynamic Linear Models |
| spTest | Nonparametric Hypothesis Tests of Isotropy and Symmetry |
| spThin | Functions for Spatial Thinning of Species Occurrence Records for Use in Ecological Models |
| spTimer | Spatio-Temporal Bayesian Modelling Using R |
| sptm | SemiParametric Transformation Model Methods |
| spup | Uncertainty Propagation Analysis |
| spuRs | Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R" |
| SQDA | Sparse Quadratic Discriminant Analysis |
| sqldf | Perform SQL Selects on R Data Frames |
| sqliter | Connection wrapper to SQLite databases |
| SqlRender | Rendering Parameterized SQL and Translation to Dialects |
| sqlscore | Utilities for Generating SQL Queries from Model Objects |
| sqlutils | Utilities for working with SQL files |
| SQN | subset quantile normalization |
| SQUAREM | Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms |
| squash | Color-Based Plots for Multivariate Visualization |
| squid | Statistical Quantification of Individual Differences |
| sra | Selection Response Analysis |
| SRCS | Statistical Ranking Color Scheme for Multiple Pairwise Comparisons |
| sROC | Nonparametric Smooth ROC Curves for Continuous Data |
| SRRS | The Stepwise Response Refinement Screener (SRRS) |
| srvyr | 'dplyr'-Like Syntax for Summary Statistics of Survey Data |
| ss3sim | Fisheries Stock Assessment Simulation Testing with Stock Synthesis |
| ssa | Simultaneous Signal Analysis |
| ssanv | Sample Size Adjusted for Nonadherence or Variability of Input Parameters |
| SSBtools | Statistics Norway's Miscellaneous Small Tools |
| ssc | Semi-Supervised Classification Methods |
| sscor | Robust Correlation Estimation and Testing Based on Spatial Signs |
| ssd | Sample Size Determination (SSD) for Unordered Categorical Data |
| SSDforR | Functions to Analyze Single System Data |
| SSDM | Stacked Species Distribution Modelling |
| sSDR | Tools Developed for Structured Sufficient Dimension Reduction (sSDR) |
| ssfa | Spatial Stochastic Frontier Analysis |
| ssfit | Fitting of parametric models using summary statistics |
| ssh.utils | Local and remote system commands with output and error capture |
| ssize.fdr | Sample Size Calculations for Microarray Experiments |
| ssizeRNA | Sample Size Calculation for RNA-Seq Experimental Design |
| sskm | Stable Sparse K-Means |
| SSL | Semi-Supervised Learning |
| ssmn | Skew Scale Mixtures of Normal Distributions |
| ssmrob | Robust estimation and inference in sample selection models |
| ssmsn | Scale-Shape Mixtures of Skew-Normal Distributions |
| SSN | Spatial Modeling on Stream Networks |
| sspline | Smoothing Splines on the Sphere |
| sspse | Estimating Hidden Population Size using Respondent Driven Sampling Data |
| SSRA | Sakai Sequential Relation Analysis |
| SSrat | Two-dimensional sociometric status determination with rating scales |
| SSRMST | Sample Size Calculation using Restricted Mean Survival Time |
| sss | Tools for Importing Files in the Triple-s (Standard Survey Structure) Format |
| SSsimple | State space models |
| ssvd | Sparse SVD |
| ssym | Fitting Semi-Parametric log-Symmetric Regression Models |
| st | Shrinkage t Statistic and Correlation-Adjusted t-Score |
| stable | Probability Functions and Generalized Regression Models for Stable Distributions |
| stabledist | Stable Distribution Functions |
| StableEstim | Estimate the Four Parameters of Stable Laws using Different Methods |
| stablespec | Stable Specification Search in Structural Equation Models |
| stabs | Stability Selection with Error Control |
| Stack | Stylized concatenation of data.frames or ffdfs |
| stackoverflow | Stack Overflow's Greatest Hits |
| stacomirtools | ODBC Connection Class for Package stacomiR |
| StagedChoiceSplineMix | Mixture of Two-Stage Logistic Regressions with Fixed Candidate Knots |
| stagePop | Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time |
| stam | Spatio-Temporal Analysis and Modelling |
| StAMPP | Statistical Analysis of Mixed Ploidy Populations |
| stampr | Spatial Temporal Analysis of Moving Polygons |
| STAND | Statistical Analysis of Non-Detects |
| standardize | Tools for Standardizing Variables for Regression in R |
| StandardizeText | Standardize Text |
| StanHeaders | C++ Header Files for Stan |
| STAR | Spike Train Analysis with R |
| stargazer | Well-Formatted Regression and Summary Statistics Tables |
| starma | Modelling Space Time AutoRegressive Moving Average (STARMA) Processes |
| starmie | Population Structure Model Inference and Visualisation |
| startR | Automatically Retrieve Multidimensional Distributed Data Sets |
| STARTS | Functions for the STARTS Model |
| startup | Friendly R Startup Configuration |
| startupmsg | Utilities for Start-Up Messages |
| Stat2Data | Datasets for Stat2 |
| statar | Tools Inspired by 'Stata' to Manipulate Tabular Data |
| StatCharrms | Statistical Analysis of Chemistry, Histopathology, and Reproduction Endpoints Including Repeated Measures and Multi-Generation Studies |
| statcheck | Extract Statistics from Articles and Recompute p Values |
| statcomp | Statistical Complexity and Information Measures for Time Series Analysis |
| StatDA | Statistical Analysis for Environmental Data |
| StatDataML | Read and Write StatDataML Files |
| statebins | U.S. State Cartogram Heatmaps in R; an Alternative to Choropleth Maps for USA States |
| statGraph | Statistical Methods for Graphs |
| stationaRy | Get Hourly Meteorological Data from Global Stations |
| statip | Miscellaneous Basic Statistical Functions |
| statisticalModeling | Functions for Teaching Statistical Modeling |
| StatMatch | Statistical Matching |
| StatMeasures | Easy Data Manipulation, Data Quality and Statistical Checks |
| statmod | Statistical Modeling |
| statnet | Software Tools for the Statistical Analysis of Network Data |
| statnet.common | Common R Scripts and Utilities Used by the Statnet Project Software |
| statnetWeb | A Graphical User Interface for Network Modeling with 'Statnet' |
| staTools | Statistical Tools for Social Network Analysis |
| StatPerMeCo | Statistical Performance Measures to Evaluate Covariance Matrix Estimates |
| statprograms | Graduate Statistics Program Datasets |
| statquotes | Quotes on Statistics, Data Visualization and Science |
| StatRank | Statistical Rank Aggregation: Inference, Evaluation, and Visualization |
| statsgrokse | R 'API' Binding to Stats.grok.se Server |
| STB | Simultaneous Tolerance Bounds |
| stcov | Stein's Covariance Estimator |
| stddiff | Calculate the Standardized Difference for Numeric, Binary and Category Variables |
| stdReg | Regression Standardization |
| stdvectors | C++ Standard Library Vectors in R |
| steadyICA | ICA and Tests of Independence via Multivariate Distance Covariance |
| steepness | Testing Steepness of Dominance Hierarchies |
| SteinIV | Semi-Parametric Stein-Like Estimator with Instrumental Variables |
| stellaR | stellar evolution tracks and isochrones |
| Stem | Spatio-temporal models in R |
| STEPCAM | ABC-SMC Inference of STEPCAM |
| stepp | Subpopulation Treatment Effect Pattern Plot (STEPP) |
| stepPenal | Stepwise Forward Variable Selection in Penalized Regression |
| stepPlr | L2 penalized logistic regression with a stepwise variable selection |
| stepR | Multiscale Change-Point Inference |
| stepwise | Stepwise detection of recombination breakpoints |
| StepwiseTest | Multiple Testing Method to Control Generalized Family-Wise Error Rate and False Discovery Proportion |
| StereoMorph | Stereo Camera Calibration and Reconstruction |
| stheoreme | Klimontovich's S-Theorem Algorithm Implementation and Data Preparation Tools |
| STI | Calculation of the Standardized Temperature Index |
| Stickbreaker | Fits Stickbreaking, Multiplicative and Additive Models to Data |
| sticky | Persist Attributes Across Data Operations |
| stilt | Separable Gaussian Process Interpolation (Emulation) |
| stinepack | Stineman, a consistently well behaved method of interpolation |
| stlplus | Enhanced Seasonal Decomposition of Time Series by Loess |
| stm | Estimation of the Structural Topic Model |
| stmBrowser | Structural Topic Model Browser |
| stmCorrViz | A Tool for Structural Topic Model Visualizations |
| STMedianPolish | Spatio-Temporal Median Polish |
| stmgp | Rapid and Accurate Genetic Prediction Modeling for Genome-Wide Association or Whole-Genome Sequencing Study Data |
| stmgui | Shiny Application for Creating STM Models |
| StMoMo | Stochastic Mortality Modelling |
| StMoSim | Plots a QQ-Norm Plot with several Gaussian simulations |
| stocc | Fit a Spatial Occupancy Model via Gibbs Sampling |
| stochprofML | Stochastic Profiling using Maximum Likelihood Estimation |
| stochvol | Efficient Bayesian Inference for Stochastic Volatility (SV) Models |
| StockChina | Real-Time Stock Price & Volume in China Market |
| stockPortfolio | Build stock models and analyze stock portfolios |
| stocks | Fast Functions for Stock Market Analysis |
| stoichcalc | R Functions for Solving Stoichiometric Equations |
| Storm | Write Storm Bolts in R using the Storm Multi-Language Protocol |
| stormwindmodel | Model Tropical Cyclone Wind Speeds |
| storr | Simple Key Value Stores |
| stoRy | Theme Enrichment Analysis for Stories |
| stosim | Stochastic Simulator for Reliability Modeling of Repairable Systems |
| STPGA | Selection of Training Populations by Genetic Algorithm |
| stplanr | Sustainable Transport Planning |
| stpm | Stochastic Process Model for Analysis of Longitudinal and Time-to-Event Outcomes |
| stpp | Space-Time Point Pattern simulation, visualisation and analysis |
| stppResid | Perform residual analysis on space-time point process models |
| stR | STR Decomposition |
| StrainRanking | Ranking of pathogen strains |
| strap | Stratigraphic Tree Analysis for Palaeontology |
| strat | An Implementation of the Stratification Index |
| strataG | Summaries and Population Structure Analyses of Genetic Data |
| stratbr | Optimal Stratification in Stratified Sampling |
| strategicplayers | Strategic Players |
| Strategy | Generic Framework to Analyze Trading Strategies |
| stratification | Univariate Stratification of Survey Populations |
| StratifiedBalancing | Performs Stratified Covariate Balancing for Data with Discrete and Continuous Outcome Variables |
| stratigraph | Toolkit for the plotting and analysis of stratigraphic and palaeontological data |
| StratSel | Strategic Selection Estimator |
| straweib | Stratified Weibull Regression Model |
| stream | Infrastructure for Data Stream Mining |
| StreamMetabolism | Calculate Single Station Metabolism from Diurnal Oxygen Curves |
| streamMOA | Interface for MOA Stream Clustering Algorithms |
| streamR | Access to Twitter Streaming API via R |
| stremr | Streamlined Estimation of Survival for Static, Dynamic and Stochastic Treatment and Monitoring Regimes |
| stressr | Fetch and plot financial stress index and component data |
| StressStrength | Computation and Estimation of Reliability of Stress-Strength Models |
| stringb | Convenient Base R String Handling |
| stringdist | Approximate String Matching and String Distance Functions |
| stringformattr | Dynamic String Formatting |
| stringgaussnet | PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor |
| stringi | Character String Processing Facilities |
| stringr | Simple, Consistent Wrappers for Common String Operations |
| strip | Lighten your R Model Outputs |
| stripless | Structured Trellis Displays Without Strips for Lattice Graphics |
| striprtf | Extract Text from RTF File |
| StroupGLMM | R Codes and Datasets for Generalized Linear Mixed Models: Modern Concepts, Methods and Applications by Walter W. Stroup |
| strucchange | Testing, Monitoring, and Dating Structural Changes |
| StructFDR | False Discovery Control Procedure Integrating the Prior Structure Information |
| structree | Tree-Structured Clustering |
| structSSI | Multiple Testing for Hypotheses with Hierarchical or Group Structure |
| strum | STRUctural Modeling of Latent Variables for General Pedigree |
| strvalidator | Process Control and Internal Validation of Forensic STR Kits |
| stsm | Structural Time Series Models |
| stsm.class | Class and Methods for Structural Time Series Models |
| stubthat | Stubbing Framework for R |
| StVAR | Student's t Vector Autoregression (StVAR) |
| stylo | Functions for a Variety of Stylometric Analyses |
| subcopem2D | Bivariate Empirical Subcopula |
| SubCultCon | Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures |
| subdetect | Detect Subgroup with an Enhanced Treatment Effect |
| subgroup | Methods for exploring treatment effect heterogeneity in subgroup analysis of clinical trials |
| SubgrpID | Patient Subgroup Identification for Clinical Drug Development |
| SubLasso | Gene selection using Lasso for Microarray data with user-defined genes fixed in model |
| sublime | Automatic Lesion Incidence Estimation and Detection using Multi-Modality Longitudinal Magnetic Resonance Images |
| subniche | Within Outlying Mean Indexes: Refining the OMI Analysis |
| SubpathwayGMir | Identify Metabolic Subpathways Mediated by MicroRNAs |
| SubpathwayLNCE | Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory |
| subplex | Unconstrained Optimization using the Subplex Algorithm |
| subprocess | Manage Sub-Processes in R |
| subrank | Computes Copula using Ranks and Subsampling |
| subscore | Computing Subscores in Classical Test Theory and Item Response Theory |
| subselect | Selecting Variable Subsets |
| subsemble | An Ensemble Method for Combining Subset-Specific Algorithm Fits |
| subspace | Interface to OpenSubspace |
| subspaceMOA | Interface to 'subspaceMOA' |
| subtype | Cluster analysis to find molecular subtypes and their assessment |
| SubVis | Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices |
| sudoku | Sudoku Puzzle Generator and Solver |
| sudokuAlt | Tools for Making and Spoiling Sudoku Games |
| SUE | Subsampling method |
| summariser | Easy Calculation and Visualisation of Confidence Intervals |
| summarytools | Dataframe Summaries, Frequency Tables and Descriptive Stats with Various Output Formats |
| sunburstR | 'Htmlwidget' for 'Kerry Rodden' 'd3.js' Sequence Sunburst |
| suncalc | Compute Sun Position, Sunlight Phases, Moon Position and Lunar Phase |
| Sunder | Quantification of the effect of geographic versus environmental isolation on genetic differentiation |
| SunterSampling | Sunter's sampling design |
| supc | The Self-Updating Process Clustering Algorithms |
| supclust | Supervised Clustering of Predictor Variables such as Genes |
| supcluster | Supervised Cluster Analysis |
| superbiclust | Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering) |
| superdiag | R Code for Testing Markov Chain Nonconvergence |
| SuperExactTest | Exact Test and Visualization of Multi-Set Intersections |
| superheat | A Graphical Tool for Exploring Complex Datasets Using Heatmaps |
| SuperLearner | Super Learner Prediction |
| superMDS | Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011) |
| superpc | Supervised principal components |
| SuperRanker | Sequential Rank Agreement |
| supervisedPRIM | Supervised Classification Learning and Prediction using Patient Rule Induction Method (PRIM) |
| SuppDists | Supplementary Distributions |
| support.BWS | Basic Functions for Supporting an Implementation of Best-Worst Scaling |
| support.BWS2 | Basic Functions for Supporting an Implementation of Case 2 Best-Worst Scaling |
| support.CEs | Basic Functions for Supporting an Implementation of Choice Experiments |
| supportInt | Calculates Likelihood Support Intervals for Common Data Types |
| surface | Fitting Hansen Models to Investigate Convergent Evolution |
| Surrogate | Evaluation of Surrogate Endpoints in Clinical Trials |
| surrosurv | Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses |
| suRtex | LaTeX descriptive statistic reporting for survey data |
| surv2sampleComp | Inference for model-free between-group parameters for censored survival data |
| survAccuracyMeasures | Estimate accuracy measures for risk prediction markers from survival data |
| survAUC | Estimators of prediction accuracy for time-to-event data |
| survAWKMT2 | Two-Sample Tests Based on Differences of Kaplan-Meier Curves |
| survC1 | C-statistics for risk prediction models with censored survival data |
| SurvCorr | Correlation of Bivariate Survival Times |
| SurvDisc | Discrete Time Survival and Longitudinal Data Analysis |
| surveillance | Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena |
| survexp.fr | Relative survival, AER and SMR based on French death rates |
| survey | Analysis of Complex Survey Samples |
| surveybootstrap | Tools for the Bootstrap with Survey Data |
| surveydata | Tools to manipulate survey data |
| surveyeditor | Generate a Survey that can be Completed by Survey Respondents |
| surveyoutliers | Helps Manage Outliers in Sample Surveys |
| surveyplanning | Survey Planning Tools |
| Survgini | The Gini concentration test for survival data |
| survIDINRI | IDI and NRI for comparing competing risk prediction models with censored survival data |
| survival | Survival Analysis |
| survivalMPL | Penalised Maximum Likelihood for Survival Analysis Models |
| survivalROC | Time-dependent ROC curve estimation from censored survival data |
| survJamda | Survival Prediction by Joint Analysis of Microarray Gene Expression Data |
| survJamda.data | Data for Package 'survJambda' |
| SurvLong | Analysis of Proportional Hazards Model with Sparse Longitudinal Covariates |
| survminer | Drawing Survival Curves using 'ggplot2' |
| survMisc | Miscellaneous Functions for Survival Data |
| survPresmooth | Presmoothed Estimation in Survival Analysis |
| SurvRank | Rank Based Survival Modelling |
| survrec | Survival analysis for recurrent event data |
| SurvRegCensCov | Weibull Regression for a Right-Censored Endpoint with Interval-Censored Covariate |
| survRM2 | Comparing Restricted Mean Survival Time |
| survsim | Simulation of Simple and Complex Survival Data |
| survSNP | Power Calculations for SNP Studies with Censored Outcomes |
| survutils | Utility Functions for Survival Analysis |
| sValues | Measures of the Sturdiness of Regression Coefficients |
| svapls | Surrogate variable analysis using partial least squares in a gene expression study |
| svcm | 2d and 3d Space-Varying Coefficient Models |
| svd | Interfaces to Various State-of-Art SVD and Eigensolvers |
| svDialogs | SciViews GUI API - Dialog boxes |
| svDialogstcltk | SciViews GUI API - Dialog boxes using Tcl/Tk |
| svdvis | Singular Value Decomposition Visualization |
| svdvisual | SVD visualization tools |
| svglite | An 'SVG' Graphics Device |
| svgPanZoom | R 'Htmlwidget' to Add Pan and Zoom to Almost any R Graphic |
| svGUI | SciViews GUI API - Functions to manage GUIs |
| svgViewR | 3D Animated Interactive Visualizations Using SVG |
| svHttp | SciViews GUI API - R HTTP server |
| svIDE | SciViews GUI API - IDE and code editor functions |
| svKomodo | SciViews GUI API - Functions to interface with Komodo Edit/IDE |
| svmadmm | Linear/Nonlinear SVM Classification Solver Based on ADMM and IADMM Algorithms |
| svMisc | SciViews GUI API - Miscellaneous functions |
| SVMMaj | SVMMaj algorithm |
| SVMMatch | Causal Effect Estimation and Diagnostics with Support Vector Machines |
| svmpath | The SVM Path Algorithm |
| svs | Tools for Semantic Vector Spaces |
| svSocket | SciViews GUI API - R Socket Server |
| svSweave | SciViews GUI API - Sweave functions |
| svTools | SciViews GUI API - Tools (wrapper for packages tools and codetools) |
| svUnit | SciViews GUI API - Unit testing |
| svWidgets | SciViews GUI API - Widgets & Windows |
| SvyNom | Nomograms for Right-Censored Outcomes from Survey Designs |
| svyPVpack | A package for complex surveys including plausible values |
| swamp | Visualization, analysis and adjustment of high-dimensional data in respect to sample annotations |
| SwarmSVM | Ensemble Learning Algorithms Based on Support Vector Machines |
| SWATmodel | A multi-OS implementation of the TAMU SWAT model |
| swCRTdesign | Stepped Wedge Cluster Randomized Trial (SW CRT) Design |
| SweaveListingUtils | Utilities for Sweave Together with TeX 'listings' Package |
| sweidnumbr | Handling of Swedish Identity Numbers |
| swfscMisc | Miscellaneous Functions for Southwest Fisheries Science Center |
| swirl | Learn R, in R |
| swirlify | A Toolbox for Writing 'swirl' Courses |
| SwissAir | Air Quality Data of Switzerland for one year in 30 min Resolution |
| switchnpreg | Switching nonparametric regression models for a single curve and functional data |
| switchr | Installing, Managing, and Switching Between Distinct Sets of Installed Packages |
| switchrGist | Publish Package Manifests to GitHub Gists |
| SWMPr | Retrieving, Organizing, and Analyzing Estuary Monitoring Data |
| sybil | Efficient Constrained Based Modelling in R |
| sybilccFBA | Cost Constrained FLux Balance Analysis: MetabOlic Modeling with ENzyme kineTics (MOMENT) |
| sybilcycleFreeFlux | Cycle-Free Flux Balance Analysis |
| sybilDynFBA | Dynamic FBA : Dynamic Flux Balance Analysis |
| sybilEFBA | Using Gene Expression Data to Improve Flux Balance Analysis Predictions |
| sybilSBML | SBML Integration in Package 'Sybil' |
| sylcount | Syllable Counting and Readability Measurements |
| syllable | A Small Collection of Syllable Counting Functions |
| symbolicDA | Analysis of Symbolic Data |
| symbols | Symbol plots |
| symDMatrix | Partitioned Symmetric Matrices |
| symmoments | Symbolic central and noncentral moments of the multivariate normal distribution |
| SymTS | Symmetric Tempered Stable Distributions |
| synbreed | Framework for the Analysis of Genomic Prediction Data using R |
| synbreedData | Data for the Synbreed Package |
| synchronicity | Boost Mutex Functionality in R |
| synchrony | Methods for computing spatial, temporal, and spatiotemporal statistics |
| SynchWave | Synchrosqueezed Wavelet Transform |
| SyncMove | Subsample Temporal Data to Synchronal Events and Compute the MCI |
| SyncRNG | A Synchronized Tausworthe RNG for R and Python |
| SYNCSA | SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities |
| SynergizeR | Interface to The Synergizer service for translating between sets of biological identifiers |
| SyNet | Inference and Analysis of Sympatry Networks |
| synlik | Synthetic Likelihood methods for intractable likelihoods |
| synRNASeqNet | Synthetic RNA-Seq Network Generation and Mutual Information Estimates |
| Synth | Synthetic Control Group Method for Comparative Case Studies |
| synthACS | Synthetic Microdata and Spatial MicroSimulation Modeling for ACS Data |
| synthpop | Generating Synthetic Versions of Sensitive Microdata for Statistical Disclosure Control |
| sys | Portable System Utilities |
| sysfonts | Loading System Fonts into R |
| sysid | System Identification in R |
| systemfit | Estimating Systems of Simultaneous Equations |
| systemicrisk | A Toolbox for Systemic Risk |
| syuzhet | Extracts Sentiment and Sentiment-Derived Plot Arcs from Text |
| T2EQ | Functions for Applying the T^2-Test for Equivalence |
| tab | Functions for Creating Summary Tables for Statistical Reports |
| taber | Split and Recombine Your Data |
| tablaxlsx | Write Formatted Tables in Excel Workbooks |
| Table1Heatmap | Table 1 Heatmap |
| table1xls | Produces Summary Tables and Exports Them to Multi-Tab Spreadsheet Format (.xls or .xlsx) |
| tableHTML | A Tool to Create HTML Tables |
| tableMatrix | Combines 'data.table' and 'matrix' Classes |
| TableMonster | Table Monster |
| tableone | Create "Table 1" to Describe Baseline Characteristics |
| tableplot | Represents tables as semi-graphic displays |
| tables | Formula-Driven Table Generation |
| TableToLongForm | TableToLongForm |
| tabplot | Tableplot, a Visualization of Large Datasets |
| tabplotd3 | Tabplotd3, interactive inspection of large data |
| tabuSearch | R based tabu search algorithm |
| tadaatoolbox | Helpers for Data Analysis and Presentation Focused on Undergrad Psychology |
| tagcloud | Tag Clouds |
| tailDepFun | Minimum Distance Estimation of Tail Dependence Models |
| tailloss | Estimate the Probability in the Upper Tail of the Aggregate Loss Distribution |
| TAM | Test Analysis Modules |
| TanB | The TanB Distribution |
| TANDEM | A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data Types |
| tangram | The Grammar of Tables |
| TANOVA | Time Course Analysis of Variance for Microarray |
| TaoTeProgramming | Illustrations from Tao Te Programming |
| TapeR | Flexible Tree Taper Curves Based on Semiparametric Mixed Models |
| TAQMNGR | Manage Tick-by-Tick Transaction Data |
| TAR | Bayesian Modeling of Autoregressive Threshold Time Series Models |
| Tariff | Replicate Tariff Method for Verbal Autopsy |
| taRifx | Collection of utility and convenience functions |
| taskscheduleR | Schedule R Scripts and Processes with the Windows Task Scheduler |
| tatoo | Combine and Export Data Frames |
| tau | Text Analysis Utilities |
| TauP.R | Earthquake Traveltime Calculations for 1-D Earth Models |
| TauStar | Efficient Computation and Testing of the Bergsma-Dassios Sign Covariance |
| tawny | Clean Covariance Matrices Using Random Matrix Theory and Shrinkage Estimators for Portfolio Optimization |
| tawny.types | Common types for tawny |
| taxize | Taxonomic Information from Around the Web |
| taxizedb | Tools for Working with 'Taxonomic' Databases |
| taxonomizr | Functions to Work with NCBI Accessions and Taxonomy |
| Taxonstand | Taxonomic Standardization of Plant Species Names |
| tbart | Teitz and Bart's p-Median Algorithm |
| tbdiag | Functions for tuberculosis diagnostics research |
| TBEST | Tree Branches Evaluated Statistically for Tightness |
| TBSSurvival | Survival Analysis using a Transform-Both-Sides Model |
| TCGA2STAT | Simple TCGA Data Access for Integrated Statistical Analysis in R |
| TCGAretriever | Retrieve Genomic and Clinical Data from TCGA |
| TcGSA | Time-Course Gene Set Analysis |
| tcgsaseq | Time-Course Gene Set Analysis for RNA-Seq Data |
| tcltk2 | Tcl/Tk Additions |
| tclust | Robust Trimmed Clustering |
| Tcomp | Data from the 2010 Tourism Forecasting Competition |
| tcpl | ToxCast Data Analysis Pipeline |
| tcR | Advanced Data Analysis of Immune Receptor Repertoires |
| TDA | Statistical Tools for Topological Data Analysis |
| TDAmapper | Analyze High-Dimensional Data Using Discrete Morse Theory |
| TDboost | A Boosted Tweedie Compound Poisson Model |
| TDCor | Gene Network Inference from Time-Series Transcriptomic Data |
| TDD | Time-Domain Deconvolution of Seismometer Response |
| TDPanalysis | Granier's Sap Flow Sensors (TDP) Analysis |
| tdr | Target Diagram |
| tdROC | Nonparametric Estimation of Time-Dependent ROC Curve from Right Censored Survival Data |
| tdthap | TDT tests for extended haplotypes |
| tea | Threshold Estimation Approaches |
| TeachBayes | Teaching Bayesian Inference |
| TeachingDemos | Demonstrations for Teaching and Learning |
| TeachingSampling | Selection of Samples and Parameter Estimation in Finite Population |
| TeachNet | Fits neural networks to learn about back propagation |
| TED | Turbulence Time Series Event Detection and Classification |
| teda | An Implementation of the Typicality and Eccentricity Data Analysis Framework |
| TEEReg | Trimmed Elemental Estimation for Linear Models |
| teigen | Model-Based Clustering and Classification with the Multivariate t Distribution |
| telegram | R Wrapper Around the Telegram Bot API |
| TELP | Social Representation Theory Application: The Free Evocation of Words Technique |
| tempcyclesdata | Climate Data from Wang and Dillon |
| tempdisagg | Methods for Temporal Disaggregation and Interpolation of Time Series |
| templates | A System for Working with Templates |
| tempR | Temporal Sensory Data Analysis |
| tensor | Tensor product of arrays |
| tensorA | Advanced tensors arithmetic with named indices |
| tensorBF | Bayesian Tensor Factorization |
| tensorBSS | Blind Source Separation Methods for Tensor-Valued Observations |
| tensorflow | R Interface to TensorFlow |
| tensorr | Sparse Tensors in R |
| tensr | Covariance Inference and Decompositions for Tensor Datasets |
| TEQR | Target Equivalence Range Design |
| TERAplusB | Test for A+B Traditional Escalation Rule |
| tergm | Fit, Simulate and Diagnose Models for Network Evolution Based on Exponential-Family Random Graph Models |
| termstrc | Zero-coupon Yield Curve Estimation |
| ternvis | Visualisation, verification and calibration of ternary probabilistic forecasts |
| TESS | Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events |
| tesseract | Open Source OCR Engine |
| testassay | A Hypothesis Testing Framework for Validating an Assay for Precision |
| TestDataImputation | Missing Item Responses Imputation for Test and Assessment Data |
| tester | Tests and checks characteristics of R objects |
| testforDEP | Dependence Tests for Two Variables |
| TestFunctions | Test Functions for Simulation Experiments and Evaluating Optimization and Emulation Algorithms |
| TestingSimilarity | Bootstrap Test for Similarity of Dose Response Curves Concerning the Maximum Absolute Deviation |
| testit | A Simple Package for Testing R Packages |
| TestScorer | GUI for Entering Test Items and Obtaining Raw and Transformed Scores |
| TestSurvRec | Statistical tests to compare two survival curves with recurrent events |
| testthat | Unit Testing for R |
| TeXCheckR | Parses LaTeX Documents for Errors |
| texmex | Statistical Modelling of Extreme Values |
| texmexseq | Treatment Effect eXplorer for Microbial Ecology eXperiments (using Sequence Counts) |
| TExPosition | Two-table ExPosition |
| texPreview | Compile and Preview Snippets of 'LaTeX' in 'RStudio' |
| texreg | Conversion of R Regression Output to LaTeX or HTML Tables |
| text2vec | Modern Text Mining Framework for R |
| textcat | N-Gram Based Text Categorization |
| textclean | Text Cleaning Tools |
| textgRid | Praat TextGrid Objects in R |
| textir | Inverse Regression for Text Analysis |
| textmineR | Functions for Text Mining and Topic Modeling |
| textmining | Integration of Text Mining and Topic Modeling Packages |
| textometry | Textual Data Analysis Package used by the TXM Software |
| textreadr | Read Text Documents into R |
| textreg | n-Gram Text Regression, aka Concise Comparative Summarization |
| textreuse | Detect Text Reuse and Document Similarity |
| textshape | Tools for Reshaping Text |
| textstem | Tools for Stemming and Lemmatizing Text |
| textTinyR | Text Processing for Small or Big Data Files |
| textutils | Utilities for Handling Strings and Text |
| TFDEA | Technology Forecasting using DEA (Data Envelopment Analysis) |
| tfer | Forensic Glass Transfer Probabilities |
| TFMPvalue | Efficient and Accurate P-Value Computation for Position Weight Matrices |
| tfplot | Time Frame User Utilities |
| tframe | Time Frame Coding Kernel |
| tframePlus | Time Frame Coding Kernel Extensions |
| TFX | R API to TrueFX(tm) |
| tgcd | Thermoluminescence Glow Curve Deconvolution |
| tggd | The Standard Distribution Functions for the Truncated Generalised Gamma Distribution |
| tglm | Binary Regressions under Independent Student-t Priors |
| tgp | Bayesian Treed Gaussian Process Models |
| tgram | Functions to compute and plot tracheidograms |
| TH.data | TH's Data Archive |
| thankr | Find Out Who Maintains the Packages you Use |
| Thermimage | Thermal Image Analysis |
| thermocouple | Temperature Measurement with Thermocouples, RTD and IC Sensors |
| thgenetics | Genetic Rare Variants Tests |
| thief | Temporal Hierarchical Forecasting |
| Thinknum | Thinknum Data Connection |
| ThreeArmedTrials | Design and Analysis of Clinical Non-Inferiority or Superiority Trials with Active and Placebo Control |
| threeboost | Thresholded variable selection and prediction based on estimating equations |
| ThreeGroups | ML Estimator for Baseline-Placebo-Treatment (Three-Group) Experiments |
| threejs | Interactive 3D Scatter Plots, Networks and Globes |
| ThreeWay | Three-Way Component Analysis |
| threewords | Represent Precise Coordinates in Three Words |
| threg | Threshold Regression |
| thregI | Threshold Regression for Interval-Censored Data with a Cure Rate Option |
| ThresholdROC | Threshold Estimation |
| thsls | Three-Stage Least Squares Estimation for Systems of Simultaneous Equations |
| tibble | Simple Data Frames |
| tibbrConnector | R Interface to TIBCO 'tibbr' |
| TickExec | Execution Functions for Tick Data Back Test |
| tictactoe | Tic-Tac-Toe Game |
| tictoc | Functions for timing R scripts, as well as implementations of Stack and List structures |
| TiddlyWikiR | Create dynamic reports using a TiddlyWiki template |
| TideCurves | Analysis and Prediction of Tides |
| TideHarmonics | Harmonic Analysis of Tides |
| Tides | Quasi-Periodic Time Series Characteristics |
| TideTables | Tide Analysis and Prediction of Predominantly Semi-Diurnal Tides |
| tidyjson | A Grammar for Turning 'JSON' into Tidy Tables |
| tidyquant | Tidy Quantitative Financial Analysis |
| tidyr | Easily Tidy Data with 'spread()' and 'gather()' Functions |
| tidyRSS | Tidy RSS for R |
| tidytext | Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools |
| tidyverse | Easily Install and Load 'Tidyverse' Packages |
| tidyxl | Read Untidy Excel Files |
| tiff | Read and write TIFF images |
| tiger | TIme series of Grouped ERrors |
| tigerhitteR | Pre-Process of Time Series Data Set in R |
| tigerstats | R Functions for Elementary Statistics |
| tigger | R Tools for Inferring New Immunoglobulin Alleles from Rep-Seq Data |
| tightClust | Tight Clustering |
| tigreBrowserWriter | 'tigreBrowser' Database Writer |