--- layout: post status: publish published: true title: 6/8/2011 - West Michigan Whitecaps 10 - Peoria Chiefs 9 author: display_name: Corey Fineran login: Corey email<EMAIL_ADDRESS>url: '' author_login: Corey author_email<EMAIL_ADDRESS>wordpress_id: 5424 wordpress_url: http://ivyenvy.com/?p=5424 date: '2011-06-09 07:59:54 +0000' date_gmt: '2011-06-09 12:59:54 +0000' categories: - Minor Leagues tags: - Andre Dawson - Kosuke Fukudome - Peoria Chiefs - Sean Marshall - Quad Cities - Tigers - Tom Gorzelanny - Angel Guzman - Peoria - O'Brien Field - River Bandits - Matt Szczur - Richard Jones - Graham Hicks - West Michigan - Whitecaps - Detroit Tigers - Hernan Perez - Rob Brantly - Billy Nowlin - David Macias - Luis Castillo - Su-Min Jung - Bryce Shafer - Kyung-Min Na - South Korea - South Bend - New Windsor - Modern Woodmen comments: [] ---
I have been to O'Brien Field when players with MLB experience have been playing with the team. On Tuesday, Angel Guzman was added to the Peoria roster from Extended Spring Training. It's possible that many casual fans wouldn't recognize his name, especially if they have a short memory. Guzman sat out the entire 2010 season after undergoing arthroscopic shoulder surgery. This is Guzman's fourth trip to Peoria. He made two rehab starts for the Chiefs in 2005 and one in 2009.
I made the 180 mile round-trip jaunt to Peoria on Wednesday night. Guzman is not scheduled to pitch until Friday, but I thought this might be a good opportunity to watch Graham Hicks pitch. Hicks came to the Cubs from the Nationals in the Tom Gorzelanny trade, which took place this last January. Hicks appeared in his 10th game this season for the Chiefs. He came into the game with a 1-2 record and a 2.33 ERA in 38.2 innings pitched. Opponents were batting .244 against Hicks and he's pitched well against lefties, holding them to a .217 average.
The Chiefs hosted the West Michigan Whitecaps in the only series in which the two teams will face each other. The Whitecaps are the Detroit Tigers affiliate in the Midwest League. The Chiefs carried a 30-28 record into the game while the Whitecaps sported a record of 25-33. With the 93 degree temperature reading at the first pitch, a healthy amount of offense was expected for the 1,802 in attendance at O'Brien Field.
Hicks is tall and lanky. His 6'5"-185lb frame, along with his wind-up are reminiscent of Sean Marshall. While Hicks has pitched pretty well this year, he struggled in this game against West Michigan. The Whitecaps jumped to a 2-0 lead in the top of the 1st inning when Hernan Perez singled with one out and then Rob Brantly followed him with a two-run homerun off the picnic tables beyond the right-field wall.
Hicks was taken deep again in the 4th, this time by the Whitecaps DH Billy Nowlin. However, it was the 5th inning where things really fell apart for Graham Hicks. The inning started off with an error by Chiefs shortstop David Macias off the bat of Luis Castillo. After a barrage of four hits and another error, the Whitecaps scored four runs, two of them earned. Hicks exited the game with the Chiefs down 7-5 after the top of the 5th and was replaced by the South Korean, Su-Min Jung.
The Chiefs offense scored three runs in the bottom of the inning, and that gave Hicks the opportunity to get the win, despite the rough outing. Hicks gave up seven runs, five of them earned, on nine hits in his five innings of work. He struck out three and did not issue a walk. Jung pitched two hitless innings, but Bryce Shafer came in to pitch the 8th for the Chiefs and the Whitecaps tied the game at nine, to give Hicks the no-decision.
Offensively, the bats were alive for the Chiefs' offense. The DH, Richard Jones, was the only Chiefs batter that did not register a hit. Matt Szczur had a career-high four RBIs and went 4-5, extending his hitting streak to 11 games. Sczcur was also able to show off some his his defensive skills and his speed in this game. He's an exciting kid to watch and a name in the organization to keep an eye on.
Kyung-Min Na also had a great game at the plate. Na went 4-4 with two doubles, an RBI and one run scored. Na is also a speedster and was named the fastest high school player in South Korea by scouts in 2009. Na is a lefty and reminded me of a smaller, faster Kosuke Fukudome with a less exaggerated corkscrew swing. He has just enough of that corkscrew swing to be very quick out of the batter's box and when a batter is making contact, it doesn't look as bad. Na was picked off first base in the 8th, so while he's very quick, it appears that the 20 year old still has some fundamentals to work on.
The game was tied at nine in the top of the 9th inning when Billy Nowlin hit his 2nd solo-homerun of the day, putting the Whitecaps up 10-9. The Chiefs were not able to respond in the bottom half of the inning and dropped to 30-29 on the season. The Chiefs' pitching struggles continue as the staff blew it's fifth save in eight games.
On Saturday, the Chiefs will host South Bend. Former Cub and Hall-of-Famer Andre Dawson will be on hand to throw out the first pitch and sign autographs for charity. We gave a pair of tickets away to Saturday's game and congratulations to Greg from New Windsor, IL for winning them. If you haven't had the opportunity to see the Peoria Chiefs this year, they are a fun team to watch. There's some speed, some power and some prospects worth keeping an eye on...and that's exactly what you'd want in a minor league team. For those of you that are here in the Quad Cities, the Chiefs will be in town next weekend to take on the River Bandits. If you get a chance, head down to Modern Woodmen and cheer on the future Cubs.


The Scoop
by Professor Whyse
on 2016-03-19
by Professor Whyse
on 2016-03-19
The Scoop is $25/year, and it offers all the cookies you can have. Mounds and mounds of them, baked by energetic graduates (or current students) trying to make a living—working on their novels or paintings or whatnot in the daytime, baking cookies in a semi-somnolent state in the evenings. They seem especially prone to laughter.
It’s been my favorite haunt for fifty years. Of course, as a freshman they took us to every tea shop to get a sample, until we were so full with caffeine that we wouldn’t dream of sleeping until the next night, and so full of liquid that there were lines for the bathrooms everywhere we went. Groups of freshmen sang in merriment as they caroused down the sidewalk, sweeping paper cups of tea samples off the platters held by smartly dressed waiters. I remember those days fondly.
Trevisia, with her thick braids that look like bread twists that are colored red, green, and yellow, is at the counter today, ready to assist anyone who is struggling with the hot water machine (and ready to administer first aid if they accidentally pour boiling water on themselves), coming up with creative names for each batch of cookies (such as “Flourclouds” or “Fantasmittles”), and making sure that no one takes more than their fair share of cookies. (What constitutes a “fair share” is subject to debate. Certainly, anyone who takes five cookies and leaves will be subject to “cold tea” in the future.)1
The Scoop Bakers are the people who know the most students by name.2 After all, almost every student comes by the Scoop (except those who have gluten allergies, people on low-sugar diets (including Stoics), and those in the Poly House, who prefer to bake their own cookies), and it is difficult not to get drawn into the Scoop Bakers’ monologues-turned-dialogues (are we ourselves cookies being baked by the oven that is Philosophocle? when will we be ready? will there will be little time to bask in our fullness before we are eaten? what do you think, oh cookie-taker?). Plus, if you know the Bakers well enough, they may even surprise you with a birthday cookie on your birthday and sing to you. (Wisely, they do not do the same to me; I do not like to be reminded of my birthdays. Furthermore, the calendar is an artificial construct.)
Do note that coming to the Scoop means consenting to be people-watched by the Bakers, who look over the counter at the amassed tables of students (and lonely professors like me who need a little evening brightness, or sugar, in their lives) like benign life-giving gods and goddesses.3 The students munch cookies while conversing in the hushed tones of confidants; or screaming out their new “slam poems”; or screwing up their brows in concentration as they practice their deconstruction skills on towers made of wooden blocks; or drawing on the wall-to-wall blackboards with colored chalk in either hand, trying their best to be ambidextrous artists.
Everything here has a unique character. Take the chairs for example. There is the throne sofa (first-come, first-serve) and its foil, the “baby stool” that short people like to make their tall friends sit on, the one four-legged chairs that wobbles, the foldable chair that will fold when you try to sit on it, a chair made of cardboard (donated by an engineering student who has graduated).4 The hot water machine also has character: sometimes the water fails to stop when you turn off the spigot.
Lisa worked as a baker for the Scoop for one day before she was fired. She cursed out a student for taking two cookies when there was one more person in line. The Bakers prefer to take a passive-agressive stance towards cookie gluttons, because other patrons are unforgiving enough towards anyone who makes them wait thirty minutes for the next batch of cookies.↩
Except for Trevisia. A student of mine reported meeting Trevisia five times under different names, before she caught on. The sixth time, she remembered his name as being a combination of the five names he had given her. Memory works in odd ways.↩
More than once, conversations in The Scoop have made their ways into novels by former Scoop-bakers-turned-writers. Chances are increased if you are a regular patron—all the more reason to come frequently.↩
I prefer the rocking chair, myself.↩


Gecode::Int::Linear::Lin< Val, P, N, pc > Class Template Reference
#include <linear.hh>
Inherits Gecode::Propagator.

Detailed Description
template<class Val, class P, class N, PropCond pc>
class Gecode::Int::Linear::Lin< Val, P, N, pc >
Base-class for n-ary linear propagators.
The type Val can be either double
or int
, defining the numerical precision during propagation. Positive views are of type P whereas negative views are of type N.
The propagation condition pc refers to all views.
Definition at line 574 of file linear.hh.
Public Member Functions | |
| virtual PropCost | cost (ModEventDelta med) const |
| Cost function (defined as dynamic PC_LINEAR_LO). | |
| virtual size_t | dispose (Space *home) |
| Delete propagator and return its size. | |
Protected Member Functions | |
| Lin (Space *home, bool share, Lin &p) | |
| Constructor for cloning p. | |
| Lin (Space *home, ViewArray< P > &x, ViewArray< N > &y, Val c) | |
| Constructor for creation. | |
| Reflection::ActorSpec | spec (const Space *home, Reflection::VarMap &m, const Support::Symbol &name) const |
| Return specification. | |
Protected Attributes | |
| ViewArray< P > | x |
| Array of positive views. | |
| ViewArray< N > | y |
| Array of negative views. | |
| Val | c |
| Constant value. | |
Related Functions | |
| (Note that these are not member functions.) | |
| template<class Val, class View> | |
| void | bounds_p (ModEventDelta med, ViewArray< View > &x, Val &c, Val &sl, Val &su) |
| Compute bounds information for positive views. | |
| template<class Val, class View> | |
| void | bounds_n (ModEventDelta med, ViewArray< View > &y, Val &c, Val &sl, Val &su) |
| Compute bounds information for negative views. |
Constructor & Destructor Documentation
| Gecode::Int::Linear::Lin< Val, P, N, pc >::Lin | ( | Space * | home, | |
| bool | share, | |||
| Lin< Val, P, N, pc > & | p | |||
| ) | [protected] |
Constructor for cloning p.
Member Function Documentation
| Reflection::ActorSpec Gecode::Int::Linear::Lin< Val, P, N, pc >::spec | ( | const Space * | home, | |
| Reflection::VarMap & | m, | |||
| const Support::Symbol & | name | |||
| ) | const [inline, protected] |
Return specification.
Reimplemented in Gecode::Int::Linear::ReLin< Val, P, N, pc, Ctrl >, Gecode::Int::Linear::ReLin< Gecode::Int::GCC::Val< View, Card, isView >, P, N, PC_INT_BND, Gecode::Int::BoolView >, and Gecode::Int::Linear::ReLin< Gecode::Int::GCC::Val< View, Card, isView >, P, N, PC_INT_BND, Ctrl >.
Definition at line 97 of file int-nary.icc.
| PropCost Gecode::Int::Linear::Lin< Val, P, N, pc >::cost | ( | ModEventDelta | med | ) | const [inline, virtual] |
Cost function (defined as dynamic PC_LINEAR_LO).
Implements Gecode::Propagator.
Reimplemented in Gecode::Int::Linear::DomEq< Val, View >.
Definition at line 81 of file int-nary.icc.
| size_t Gecode::Int::Linear::Lin< Val, P, N, pc >::dispose | ( | Space * | home | ) | [inline, virtual] |
Delete propagator and return its size.
Reimplemented from Gecode::Actor.
Reimplemented in Gecode::Int::Linear::ReLin< Val, P, N, pc, Ctrl >, Gecode::Int::Linear::ReLin< Gecode::Int::GCC::Val< View, Card, isView >, P, N, PC_INT_BND, Gecode::Int::BoolView >, and Gecode::Int::Linear::ReLin< Gecode::Int::GCC::Val< View, Card, isView >, P, N, PC_INT_BND, Ctrl >.
Definition at line 87 of file int-nary.icc.
Friends And Related Function Documentation
| void bounds_p | ( | ModEventDelta | med, | |
| ViewArray< View > & | x, | |||
| Val & | c, | |||
| Val & | sl, | |||
| Val & | su | |||
| ) | [related] |
| void bounds_n | ( | ModEventDelta | med, | |
| ViewArray< View > & | y, | |||
| Val & | c, | |||
| Val & | sl, | |||
| Val & | su | |||
| ) | [related] |
Member Data Documentation
ViewArray<P> Gecode::Int::Linear::Lin< Val, P, N, pc >::x [protected] |
ViewArray<N> Gecode::Int::Linear::Lin< Val, P, N, pc >::y [protected] |
Val Gecode::Int::Linear::Lin< Val, P, N, pc >::c [protected] |
The documentation for this class was generated from the following files:
- gecode/int/linear.hh (Revision: 7285)
- gecode/int/linear/int-nary.icc (Revision: 6017)


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A dangerous trend in education is the advent of the Learning Management System (LMS). Jim Groom writes about the danger of siloing our data across the web rather than sharing it freely. In other words, if you work in Edmodo, it’s difficult to share that content outside of Edmodo. It’s stuck and you’re robbed of the ability to share your work with a larger group who can build on, improve, and re-share.
The LMS has taken off because it takes the difficulty out of piecing things together. Unfortunately, rather than taking the time to look at alternatives, we go for the easy answer without considering the implications of locking out content until it’s almost too late.
I’ve started a document which walks through how to connect documents, blogs, videos, and calendars all through RSS. Rather than locking your content away, RSS pulls from various sources – preferably ones you control – to deliver content directly to you or your students. RSS has been around for a long time, but it takes time to set up and manage, which is why most people pass over the option.
The goal of this document is to help you connect your dots. It’s growing and dynamic. I’ll update it, add, and take away. Feel free to copy it for yourself and share it with your colleagues. We need to begin talking about controlling our content and I think this is a great place to start.
Written on June 28th, 2014 by Brian Bennett Categorized in: All Collaboration Teaching
Leave a comment


| 9:54:02 AM PDT - Mon, Aug 1st 2016 |
|
We are trying to get NWChem 6.6 working with fully patched 64 bit Centos 7.2 systems, but are having some trouble. It compiles and links cleanly, but seg faults and crashes immediately upon running.
If compiled against OpenMPI, we see:
/usr/lib64/openmpi/bin/mpiexec
mpiexec noticed that process rank 0 with PID 8294 on node moose16 exited on signal 11 (Segmentation fault).
Against MPICH:
/usr/lib64/mpich/bin/mpiexec
Program received signal SIGILL: Illegal instruction.
Backtrace for this error:
Program received signal SIGILL: Illegal instruction.
Backtrace for this error:
Program received signal SIGILL: Illegal instruction.
Program received signal SIGILL: Illegal instruction.
Backtrace for this error:
Backtrace for this error:
- 0 0x2B2E96996467
- 0 0x2AAE50407467
- 0 0x2ADE4D748467
- 0 0x2B32B1BBB467
- 1 0x2ADE4D748AAE
- 1 0x2AAE50407AAE
- 1 0x2B2E96996AAE
- 1 0x2B32B1BBBAAE
- 2 0x2B2E9782F66F
- 2 0x2B32B2A5466F
- 2 0x2ADE4E5E166F
- 2 0x2AAE512A066F
- 3 0x2E6F972 in mxinit_ at mxsubs.F:118
- 3 0x2E6F972 in mxinit_ at mxsubs.F:118
- 3 0x2E6F972 in mxinit_ at mxsubs.F:118
- 3 0x2E6F972 in mxinit_ at mxsubs.F:118
- 4 0x4F49C2 in nwchem at nwchem.F:89
- 4 0x4F49C2 in nwchem at nwchem.F:89
- 4 0x4F49C2 in nwchem at nwchem.F:89
- 4 0x4F49C2 in nwchem at nwchem.F:89
=======================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= EXIT CODE: 132
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
=======================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Illegal instruction (signal 4)
This typically refers to a problem with your application.
We have tried applying the NWChem patches available on the download page, including the latest ones for Fedora 24, but no joy.
Any hints would be appreciated, thanks!
-Dj
|


Passing the baton in workflow languages: makefiles, snakemake, and nextflow
I was curious about the differences between workflow languages since they are becoming more and more popular for submitting pipelines across different architectures (local machine, HPC, AWS), with caching and some features for parallelism. This is a write up of a quick comparison using a toy example running on a local machine, mostly to compare syntax.
For now, I'm comparing Makefiles, Snakemake, and Nextflow. I picked Makefiles since most workflow languages derive from it, Snakemake for being popular in the python community, and Nextflow because of the buzz on twitter and recent academic papers. There are definitely more workflow languages than these (CWL, drake, cromwell, etc…).
I started with an example pipeline, passing intermediate textfiles. The side-by-side comparison of source code is shown below:
From left to right, we have the 1970's Makefile, the ~2012 Snakemake, and the ~2017 Nextflow. (Actually the Nextflow is from the later version (dsl2) which includes some substantial changes in syntax.) Across the 3 languages are rules/processes/code chunks which are named a variation of "Amy", "Bob", "Cathy", "Dave", and "Eve". Each one passes a text file ("...baton.txt") down the line, similar to a relay race passing a baton between runners. Each runner (rule/process/code chunk) includes a sleep statement, waiting for 5 seconds before adding a progress statement (e.g. "Dave passes baton") to the baton text file. The sleep statement simulates some pipeline command or analysis step.
Comparing Syntax:
Of the three languages, Makefile and Snakemake look the most similar IMHO. Makefiles define their rules
output_file : required_input_files
# shell commands here
Snakemake adds an explicit "rule" prefix and moves the input/output files down to their own "input:", "output:" prefix. Even the shell command gets its own "shell:" prefix. Snakemake rules can have arbitrary names "Amy", "Bob" instead of the output files "Amy_baton.txt", "Bob_baton.txt", etc.
Moving from Snakemake to Nextflow, we see rules are now grouped into curly brackets and each defined as a "process". Nextflow still has Snakemake's arbitrary rule names ("Amy", "Bob") and "input:"/"output:" prefixes; but the "shell:" prefix has changed to "script:". Nextflow's "script:" chunk can be from any scripting language (bash, perl, R, python…) selected by a shebang "# /usr/bin/env bash" line. Nextflow dsl2 has the added "workflow{...}" chunk, where output of a process is piped (bash-style) as input to another process (e.g. "Amy | Bob | Cathy |Dave | Eve ") with a view command at the end, to print out the final baton. This allows flexibility in the pipeline as processes could be rearranged (e.g. "Amy | Dave | Cathy | Bob | Eve") instead of being hard coded in Makefiles or Snakemake. It's possible Snakemake has methods similar to Nextflow's "workflow:" but I will need to explore more. I admit I'm more familiar with Nextflow's syntax.
Comparing the run experience:
Running the commands are shown below:
Running the Makefiles made me feel like I was running a bash script, familiar and a bit generic. Snakemake output was a bit longer than I expected... and I admit I prefer Nextflow's listing of each process and the number of parallel threads dedicated to each process. Snakemake and Nextflow both had reporting methods for showing the connection between processes and how long each process took to run. I did not see a similar feature in Makefiles.
Next Steps:
I still need to explore how they compare in a pipeline with parallelism. I regularly use Nextflow for parallelizing my pipelines on slurm managed HPC servers, but will need to explore Snakemake before writing up the comparison in terms of parallelism.
Source code from this comparison is available at: https://github.com/j23414/compare_workflows
Some Resources:
- Stallman, R.M. and McGrath, R., 1991. GNU Make-A Program for Directing Recompilation. note: appeared in 1976, this links to the GNU Make manual.
- Köster, J. and Rahmann, S., 2012. Snakemake—a scalable bioinformatics workflow engine. Bioinformatics, 28(19), pp.2520-2522.
- Di Tommaso, P., Chatzou, M., Floden, E.W., Barja, P.P., Palumbo, E. and Notredame, C., 2017. Nextflow enables reproducible computational workflows. Nature biotechnology, 35(4), pp.316-319.


Make sure to start the example NodeJS server using 'npm run exampleServer'!
Edit this file (examples/Watch/index.html) so that your changes are obvious, e.g. add some text. It will magically reload.
Edit This Text


"EBED-MELECH "a servant of the king; probably an official title, an Ethiopian, “one of the eunuchs which was in the king’s house;” i.e., in the palace of Zedekiah, king of Judah. He interceded with the king in Jeremiah’s behalf, and was the means of saving him from death by famine(Jeremiah 38:7-13: comp. 39:15-18).
"EBED-MELECH "a servant of the king; probably an official title, an Ethiopian, “one of the eunuchs which was in the king’s house;” i.e., in the palace of Zedekiah, king of Judah. He interceded with the king in Jeremiah’s behalf, and was the means of saving him from death by famine(Jeremiah 38:7-13: comp. 39:15-18).


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For errors: please send a note including the page, error, and correction to<EMAIL_ADDRESS>Thanks!


+ Project Descriptions #01
I created a simple onlyfans site using Django. During the deployment process, it was containerized through Docker. I linked the NGINX server and Django application server through Docker Compose. I created AWS resources using Terraform. Build automation was done through the linkage between Docker Hub and GitHub. I plan to automate deployment by running Jenkins containers on the server.
- Project : Django fans
- Completed Date : April 2021
- Architect : Taehee Jo
- Working day : 20+
- Used skill : Django, Docker, AWS


FindQt4¶
Finding and Using Qt4¶
This module can be used to find Qt4. The most important issue is that
the Qt4 qmake is available via the system path. This qmake is then
used to detect basically everything else. This module defines a
number of IMPORTED
targets, macros and variables.
Typical usage could be something like:
set(CMAKE_AUTOMOC ON)
set(CMAKE_INCLUDE_CURRENT_DIR ON)
find_package(Qt4 4.4.3 REQUIRED QtGui QtXml)
add_executable(myexe main.cpp)
target_link_libraries(myexe Qt4::QtGui Qt4::QtXml)
Note
When using IMPORTED
targets, the qtmain.lib static library is
automatically linked on Windows for WIN32
executables. To disable that globally, set the
QT4_NO_LINK_QTMAIN
variable before finding Qt4. To disable that
for a particular executable, set the QT4_NO_LINK_QTMAIN
target
property to TRUE
on the executable.
Qt Build Tools¶
Qt relies on some bundled tools for code generation, such as moc
for
meta-object code generation,``uic`` for widget layout and population,
and rcc
for virtual filesystem content generation. These tools may be
automatically invoked by cmake(1)
if the appropriate conditions
are met. See cmake-qt(7)
for more.
Qt Macros¶
In some cases it can be necessary or useful to invoke the Qt build tools in a more-manual way. Several macros are available to add targets for such uses.
macro QT4_WRAP_CPP(outfiles inputfile ... [TARGET tgt] OPTIONS ...)
create moc code from a list of files containing Qt class with
the Q_OBJECT declaration. Per-directory preprocessor definitions
are also added. If the <tgt> is specified, the
INTERFACE_INCLUDE_DIRECTORIES and INTERFACE_COMPILE_DEFINITIONS from
the <tgt> are passed to moc. Options may be given to moc, such as
those found when executing "moc -help".
macro QT4_WRAP_UI(outfiles inputfile ... OPTIONS ...)
create code from a list of Qt designer ui files.
Options may be given to uic, such as those found
when executing "uic -help"
macro QT4_ADD_RESOURCES(outfiles inputfile ... OPTIONS ...)
create code from a list of Qt resource files.
Options may be given to rcc, such as those found
when executing "rcc -help"
macro QT4_GENERATE_MOC(inputfile outputfile [TARGET tgt])
creates a rule to run moc on infile and create outfile.
Use this if for some reason QT4_WRAP_CPP() isn't appropriate, e.g.
because you need a custom filename for the moc file or something
similar. If the <tgt> is specified, the
INTERFACE_INCLUDE_DIRECTORIES and INTERFACE_COMPILE_DEFINITIONS from
the <tgt> are passed to moc.
macro QT4_ADD_DBUS_INTERFACE(outfiles interface basename)
Create the interface header and implementation files with the
given basename from the given interface xml file and add it to
the list of sources.
You can pass additional parameters to the qdbusxml2cpp call by setting
properties on the input file:
INCLUDE the given file will be included in the generate interface header
CLASSNAME the generated class is named accordingly
NO_NAMESPACE the generated class is not wrapped in a namespace
macro QT4_ADD_DBUS_INTERFACES(outfiles inputfile ... )
Create the interface header and implementation files
for all listed interface xml files.
The basename will be automatically determined from the name
of the xml file.
The source file properties described for
QT4_ADD_DBUS_INTERFACE also apply here.
macro QT4_ADD_DBUS_ADAPTOR(outfiles xmlfile parentheader parentclassname
[basename] [classname])
create a dbus adaptor (header and implementation file) from the xml file
describing the interface, and add it to the list of sources. The adaptor
forwards the calls to a parent class, defined in parentheader and named
parentclassname. The name of the generated files will be
<basename>adaptor.{cpp,h} where basename defaults to the basename of the
xml file.
If <classname> is provided, then it will be used as the classname of the
adaptor itself.
macro QT4_GENERATE_DBUS_INTERFACE( header [interfacename] OPTIONS ...)
generate the xml interface file from the given header.
If the optional argument interfacename is omitted, the name of the
interface file is constructed from the basename of the header with
the suffix .xml appended.
Options may be given to qdbuscpp2xml, such as those found when
executing "qdbuscpp2xml --help"
macro QT4_CREATE_TRANSLATION( qm_files directories ... sources ...
ts_files ... OPTIONS ...)
out: qm_files
in: directories sources ts_files
options: flags to pass to lupdate, such as -extensions to specify
extensions for a directory scan.
generates commands to create .ts (vie lupdate) and .qm
(via lrelease) - files from directories and/or sources. The ts files are
created and/or updated in the source tree (unless given with full paths).
The qm files are generated in the build tree.
Updating the translations can be done by adding the qm_files
to the source list of your library/executable, so they are
always updated, or by adding a custom target to control when
they get updated/generated.
macro QT4_ADD_TRANSLATION( qm_files ts_files ... )
out: qm_files
in: ts_files
generates commands to create .qm from .ts - files. The generated
filenames can be found in qm_files. The ts_files
must exist and are not updated in any way.
macro QT4_AUTOMOC(sourcefile1 sourcefile2 ... [TARGET tgt])
The qt4_automoc macro is obsolete. Use the CMAKE_AUTOMOC feature instead.
This macro is still experimental.
It can be used to have moc automatically handled.
So if you have the files foo.h and foo.cpp, and in foo.h a
a class uses the Q_OBJECT macro, moc has to run on it. If you don't
want to use QT4_WRAP_CPP() (which is reliable and mature), you can insert
#include "foo.moc"
in foo.cpp and then give foo.cpp as argument to QT4_AUTOMOC(). This will
scan all listed files at cmake-time for such included moc files and if it
finds them cause a rule to be generated to run moc at build time on the
accompanying header file foo.h.
If a source file has the SKIP_AUTOMOC property set it will be ignored by
this macro.
If the <tgt> is specified, the INTERFACE_INCLUDE_DIRECTORIES and
INTERFACE_COMPILE_DEFINITIONS from the <tgt> are passed to moc.
function QT4_USE_MODULES( target [link_type] modules...)
This function is obsolete. Use target_link_libraries with IMPORTED targets
instead.
Make <target> use the <modules> from Qt. Using a Qt module means
to link to the library, add the relevant include directories for the
module, and add the relevant compiler defines for using the module.
Modules are roughly equivalent to components of Qt4, so usage would be
something like:
qt4_use_modules(myexe Core Gui Declarative)
to use QtCore, QtGui and QtDeclarative. The optional <link_type> argument
can be specified as either LINK_PUBLIC or LINK_PRIVATE to specify the
same argument to the target_link_libraries call.
IMPORTED Targets¶
A particular Qt library may be used by using the corresponding
IMPORTED
target with the target_link_libraries()
command:
target_link_libraries(myexe Qt4::QtGui Qt4::QtXml)
Using a target in this way causes :cmake(1)` to use the appropriate include
directories and compile definitions for the target when compiling myexe
.
Targets are aware of their dependencies, so for example it is not necessary
to list Qt4::QtCore
if another Qt library is listed, and it is not
necessary to list Qt4::QtGui
if Qt4::QtDeclarative
is listed.
Targets may be tested for existence in the usual way with the
if(TARGET)
command.
The Qt toolkit may contain both debug and release libraries.
cmake(1)
will choose the appropriate version based on the build
configuration.
Qt4::QtCore
- The QtCore target
Qt4::QtGui
- The QtGui target
Qt4::Qt3Support
- The Qt3Support target
Qt4::QtAssistant
- The QtAssistant target
Qt4::QtAssistantClient
- The QtAssistantClient target
Qt4::QAxContainer
- The QAxContainer target (Windows only)
Qt4::QAxServer
- The QAxServer target (Windows only)
Qt4::QtDBus
- The QtDBus target
Qt4::QtDeclarative
- The QtDeclarative target
Qt4::QtDesigner
- The QtDesigner target
Qt4::QtDesignerComponents
- The QtDesignerComponents target
Qt4::QtHelp
- The QtHelp target
Qt4::QtMotif
- The QtMotif target
Qt4::QtMultimedia
- The QtMultimedia target
Qt4::QtNetwork
- The QtNetwork target
Qt4::QtNsPLugin
- The QtNsPLugin target
Qt4::QtOpenGL
- The QtOpenGL target
Qt4::QtScript
- The QtScript target
Qt4::QtScriptTools
- The QtScriptTools target
Qt4::QtSql
- The QtSql target
Qt4::QtSvg
- The QtSvg target
Qt4::QtTest
- The QtTest target
Qt4::QtUiTools
- The QtUiTools target
Qt4::QtWebKit
- The QtWebKit target
Qt4::QtXml
- The QtXml target
Qt4::QtXmlPatterns
- The QtXmlPatterns target
Qt4::phonon
- The phonon target
Result Variables¶
Below is a detailed list of variables that FindQt4.cmake sets.
Qt4_FOUND
- If false, don’t try to use Qt 4.
QT_FOUND
- If false, don’t try to use Qt. This variable is for compatibility only.
QT4_FOUND
- If false, don’t try to use Qt 4. This variable is for compatibility only.
QT_VERSION_MAJOR
- The major version of Qt found.
QT_VERSION_MINOR
- The minor version of Qt found.
QT_VERSION_PATCH
- The patch version of Qt found.


Consider the following function:
What will be printed when dosomething(5) is called?
(Either write a sequence of numbers, or write "infinite
recursion".)
54321
The print command will be exectued before the recursive call, each time until it reaches the base case.


{%extends 'mgmt/index.html'%} {% load static%} {% block content %} {% load widget_tweaks %}
Select the window most applicable to the Part you have received!
Parts received for a specific tail number.
If there is an issue associated with the part, deeming it non-serviceable.
Parts received with the intention of being placed into stock.


{include file="public/head" /} {include file="public/css" /}
{include file="public/nav-top" /} {include file="public/nav-left" /}
首页
aaaadfdsafsd
{include file="public/footer" /}
{include file="public/js" /}


This example processes an stream of inputs using a TransformStream
inside a web worker.
It uses transferable ReadableStream
and WritableStream
to pipe data to and from the
worker, allowing the page to show the results as they are being received
and remain responsive because the processing happens in a separate thread.
This demo requires the browser to support transferable streams. At the time of writing, transferable streams are
available in Chrome Canary 73 with the "experimental Web platform features" flag enabled.
Go to chrome://flags/#enable-experimental-web-platform-features
to enabled/disable this flag.


This will be used to label these credentials and address as one of your favorite repositories
The base address of the repository you wish to upload to.
Your B2Share token


How high can you go?
WASD to Move. Space to Jump/Double-Jump. Drag to rotate camera.
Current Height
Best Height
FPS
CHEATS ENABLED


A land cover change detection algorithm called recursive merge was used to analyze 1 km monthly Enhanced Vegetation Index (EVI) dataset obtained from NASA. OpenCV (C++) was used to work with the dataset. A noise reduction technique based on a statistical hypothesis test was applied on the dataset prior to the application of recursive merge algorithm.


This is my first udacity project.
I will try to use some of the tags we learned.
This is an image:
And some
bold italic text
Some more text
And her is even
more more more more


There was a problem loading the call types and reasons. You will need to contact ICT to resolve this.
Do this on Universal Housing.
Do this on Universal Housing. Do not add notes in CRM, add them in Universal Housing.
See Universal Housing for breakdown of charges.


{%extends "base.html"%} {% block title %}Editing {{book.title}}{% endblock %} {%block operation%}
Select the book image


Major Assessment 3 -- Programming test #test
Choose one question from problem A and problem B:
Problem A.
http://codingbat.com/prob/p194530,
Problem B.
http://codingbat.com/prob/p157900
please write code for it and pass the online judge.
Create a link in your project page naming: 2016Nov30_Major3_ProgrammingTest_YourName
The linked page contains
- 1. your code
- 2. a image of your pass test screenshot.
You can refer to this Reference for array manipulation, especially about how to loop an array.
http://codingbat.com/doc/java-array-loops.html
The following is an example for loop an array for the maximum value from the reference link.
// Find-Max
// Given a non-empty array of ints, returns
// the largest int value found in the array.
// (does not work with empty arrays)
public int findMax(int[] nums) {
int maxSoFar = nums[0]; // use nums[0] as the max to start
// Look at every element, starting at 1
for (int i=1; i<nums.length; i++) {
if (nums[i] > maxSoFar) {
maxSoFar = nums[i];
}
}
return maxSoFar;
}


RoboChrome was written between 2013 and 2014 by Jens Kutilek at FontShop International in Berlin. He also figured out the Apple color font format and wrote the FontTools module code for it.
It contains code from Behdad Esfahbod’s fork of the Python FontTools, notably the COLR/CPAL and SVG table modules, and the flat Python module by Juraj Sukop for rasterizing the export bitmaps.
The SVG pen code was contributed by Andreas Eigendorf.
Benedikt Bramböck discovered an OpenType-SVG example font, which made implementing SVG export much easier than just by reading the specs.
Inga Plönnigs built our first proper color font with RoboChrome, FF Copa.


--- layout: none title: "WLAB GM - Nanocar" permalink: /presentations/wlab/22-09-2019/ date: 2019-09-22 categories: presentations ---


Research
BacToMars
Wellesley College's Human Computer Interaction Lab
Project Brief:
...wip...
My Part in the Project Included:
- Designing, creating, and implemented graphics
- Designing and creating mockups of new user interfaces
Publications:
- O. Shaer, O. Nov, J. Okerlund, M. Balestra, E. Stowell, L. Westendorf, C. Pollalis, L. Westort, J. Davis, M. Ball. BacToMars: Creative Engagement with Bio-Design for Children, Proc. IDC '17.
For more info, including a video, on this ongoing project check out Wellesley College's HCI Lab's TangiBac page.
HoloMuse
Wellesley College's Human Computer Interaction Lab
Project Brief:
A collaboration project with the Davis Museum at Wellesley College to create a HoloLens application that allows a user to curate their own exhibit using 3D scanned artifacts from Ancient Greece. The curation includes placing the objects in space and also recording information about each object. Other users can then load the exhibit to view it and can click an object to hear information about it. The aim of this project is to test how this device can change and make the museum experience more informative.
My Part in the Project Included:
- Developed (Unity and C#) backend elements of the augmented reality application including the scaling, rotation, and movement of objects as well as coded the ability for users to remove materials, remove objects from the scene, and hide and display info. In addition, implemented audio commands of different aspects of the coded interactions.
- Presenting this work at Wellesley College conferences.
Publications:
- Fahnbulleh, W. and Davis, J. HoloMuse: Enhancing Engagement with Archaeological Artifacts Through Gesture-Based Interaction with Holograms, Wellesley Ruhlman Conference
For more info, including a video, on this ongoing project check out Wellesley College's HCI Lab's holoSTEAM page.
Human-Computer Interaction for Personal Genomics
Wellesley College's Human Computer Interaction Lab
Project Brief:
Questions about how people make sense of and engage with their personal genomic information, and how comfortable they feel about sharing it in order to advance scientific and biomedical research, are not only of paramount importance for society and policy makers, but also a pressing issue for HCI researchers. Funded by the National Science Foundation, and in collaboration with the Harvard Personal Genome Project, we investigate how to design effective interaction techniques to empower nonexpert users to engage with their personal genomic information. We also explore how user interface design interventions in online consent forms can support informed decision and enable users to make decisions that are right for them regarding their personal genomic information.
My Part in the Project Included:
- Coding (CSS, JavaScript, HTML, AJAX, PHP, and SQL) the backend and front end of interactive features (commenting and highlighting) intended to promote community interaction and understanding to an online consent form.
- Consulting on and helping code (HTML, CSS, JavaScript, and AJAX) design and other aspects of the data vizualization for personal genome reports.
- Acting as a beta tester and manager for both portions of the Personal Genomics Project team's work.
- Presenting this work at Wellesley College conferences.
Publications:
- O. Shaer, O. Nov, J. Okerlund, M. Balestra, E. Stowell, L. Westendorf, C. Pollalis, L. Westort, J. Davis, M. Ball. GenomiX: A Novel Interaction Tool for Self-Exploration of Personal Genomic Data, Proc. CHI '16 Computer-Human Interaction.
- Davis, J., Pollalis, C., Westort, L. New Human-Computer Interaction Interventions For Personal Geomics, Wellesley Tanner Conference '15.
For more info, including a video, on this ongoing project check out Wellesley College's HCI Lab's PGHCI page.
An In-Depth Look at the Benefits of Immersion Cues on Spatial 3D Problem Solving
Wellesley College's Human Computer Interaction Lab
Project Brief:
3D stereoscopic displays for desktop use show promise for augmenting users’ spatial problem solving tasks. These displays have the capacity for different types of immersion cues including binocular parallax, motion parallax, proprioception, and haptics. Such cues can be powerful tools in increasing the realism of the virtual environment by making interactions in the virtual world more similar to interactions in the real non-digital world. However, little work has been done to understand the effects of such immersive cues on users’ understanding of the virtual environment. We present a study in which users solve spatial puzzles with a 3D stereoscopic display under different immersive conditions while we measure their brain workload using fNIRS and ask them subjective workload questions. We conclude that
- stereoscopic display leads to lower task completion time, lower physical effort, and lower frustration
- vibrotactile feedback results in increased perceived immersion and in higher cognitive workload
- increased immersion (which combines stereo vision with vibrotactile feedback) does not result in reduced cognitive workload.
My Part in the Project Included:
- Compiling the puzzles into a format suitable for a study with multiple test groups.
- Coding (C# and JavaScript) a framework for the puzzle related computer aspects of the study.
- Writing the script used by the experimenters when conducting studies, compiled and ran basic analytics on the collected data, and helped to write and edit papers based off the collected data.
- Presenting this work in conferences held in Hawaii and at Wellesley College.
- E. Solovey, J. Okerlund, C. Hoef, J. Davis, O. Shaer Augmenting Spatial Skills with Semi-Immersive Interactive Desktop Displays: Do Immersion Cues Matter?. Augmented Human '15.
- C. Hoef, J. Davis, O.Shaer, E. Solovey An In-Depth Look at the Benefits of Immersion Cues on Spatial 3D Problem Solving. Wellesley Ruhlman Conference '15. SUI’14.
Publications:
For more information check out Wellesley College's HCI Lab's Beyond the Screen page.


Starting with version v2.5 the library now have full support for PHP5 style
exceptions. The library provides an exception class named
JpGraphException
which is slightly different compared with
traditional exception classes in that this class can not only return an text string
as error but also an image. This is necessary in order to handle the case where a
script has an error and is called from within an <img> tag. The
only data that can then be displayed in a browser is image data and hence it is
necessary for the error to be formatted as an image.
In addition to providing an exception class the library also installs its own
default exception handler to properly display an image. This default exception
handler will be automatically called whenever an "uncaught" exception would
otherwise be generated. This means that it is strictly not necessary to use
"try {} catch() {}
" blocks around the library scripts.
When an exception is generated the default exception handler first validates that
the exception is a proper descendant of JpGraphException
and if so,
generates the image by calling the JpgraphException::Stroke()
method.
If the exception is not a JpGraphException
based exception then the
handler re-raises the error. This means that in script that you create that is meant
to be called from within an <img> tag all exception should be a
derivate of JpGraphException
in order to properly generate an error
image.
A typical example on how to raise an exception in your own code is shown in Example 6.1. Throwing a JpGraph exception
Example 6.1. Throwing a JpGraph exception
1 2 3 | throw new JpGraphException(' ... some error message ...'); |
In case you need to handle the exception in a "try {} catch() {}
"
block (perhaps in order to do necessary cleanup) it is important to remember to call
the Stroke()
method which will create and stream the error message back
to the browser. An example of this is shown in Example 6.2. Catching a JpGraph exception and sending it back as an image to the
client
Example 6.2. Catching a JpGraph exception and sending it back as an image to the client
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | try { $graph = new Graph($width,$height); // ... Code to setup the graph if( /* some error condition */ ) { throw new JpGraphException(' ... some error message ...'); } } catch ( JpGraphException $e ) { // .. do necessary cleanup // Send back error message $e->Stroke(); } |
Another typical augmentation of the exception handling might be to also
log an error to some logging server or plain log file. This should be done
before the call to Stroke()
since that call will never
return.
An example of real life error handling with exception is shown in listing Preparing the data in the introductory example with Sun spots.
By default an exception that occurs in the library will create an error image as shown in the previous section. However there might be circumstance where a text based error handling is preferred (usually when graph are created from the command line).
This could be accomplished in two ways. By catching the exception in the script and handle it accordingly or we could slightly modify the default behavior of the default exception handler in the library. How this is done will now be described.
In order to enable a text based error handler we just need to disable the image based error handler. This is done with a call to the method
JpGraphError::SetImageFlag($aFlag)
Since the error handling have global scope this is a static function which can be called as the following example shows
1 | JpGraphError::SetImageFlag(false); // Enable text based error handling |
Adding the line above to a graph script will cause any error to be printed to
STDERR
when the script is called from the command line. This is
a very convenient way to show errors when command line constructions like
$> php mygraph.php > mygraph.png
is used since writing the error to STDOUT
will cause the error
message to be sent back to the console since the call above only redirected
STDOUT
and not STDERR
.
When the script is called from PHP embedded in a HTTP server (e.g. Apache)
there is no concept of a STDERR
and the error message will just be
sent back as normal text to the browser.
In addition to the option of having the error sent back as a string to the client it can instead be written to a named log file. The log file name is specified with a call to the (static) method
JpGraphError::SetLogFile($aFileName)
The file needs to be writable by the PHP process. All error messages are
appended to the end of the file and each error message is prepended by the date
and time (in RFC 2822
formatted
date).
If the filename is given as the string 'syslog'
then the error
message will be written to the default system logger instead. When a script is
run from, for example, Apache this is normally on Unix
'/var/log/apache2/error_log
'


Machine learning based package to predict anti-angiogenic peptides using heterogeneous sequence descriptors. 'AntAngioCOOL' exploits five descriptor types of a peptide of interest to do prediction including: pseudo amino acid composition, k-mer composition, k-mer composition (reduced alphabet), physico-chemical profile and atomic profile. According to the obtained results, 'AntAngioCOOL' reached to a satisfactory performance in anti-angiogenic peptide prediction on a benchmark non-redundant independent test dataset.
| Version: | 1.2 |
| Depends: | caret, rJava, RWeka, rpart, R (≥ 2.10.0) |
| Published: | 2016-08-01 |
| Author: | Babak Khorsand |
| Maintainer: | Javad Zahiri <zahiri at modares.ac.ir> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| CRAN checks: | AntAngioCOOL results |
| Reference manual: | AntAngioCOOL.pdf |
| Package source: | AntAngioCOOL_1.2.tar.gz |
| Windows binaries: | r-devel: AntAngioCOOL_1.2.zip, r-release: AntAngioCOOL_1.2.zip, r-oldrel: AntAngioCOOL_1.2.zip |
| OS X binaries: | r-release: AntAngioCOOL_1.2.tgz, r-oldrel: AntAngioCOOL_1.2.tgz |
Please use the canonical form https://CRAN.R-project.org/package=AntAngioCOOL to link to this page.


Christmas dinner flavour Gyozas now exist filled with turkey, bacon and stuffing
Itsu has launched a new festive flavour gyoza that combines the Japanese dumplings with a traditional Christmas dinner, packed full of turkey, bacon, stuffing and even cranberry sauce
by Molly Holt, https://www.facebook.com/mollyjaholt/Out of all the food hybrids out there, we never thought we'd see the day al the key ingredients of a traditional British roast dinner were crammed into a Japanese gyoza.
But now you can eat lots of little bite-sized roast dinners as you walk, as Itsu has created what's surely the world's first Christmas dinner gyoza.
A festive feast packed into a soft steamed dumpling, each gyoza is filled with turkey, bacon, stuffing and even cranberry sauce, working out at just 302 calories each.
As well as tasting unique, the dumplings are also bright red, thanks to a natural beetroot flavouring.
Set to launch next Wednesday (20 November) in Itsu stores all across the UK, a portion of eight 'Christmas cracker' gyoza will set you back £4.29.
If you are heading into an Itsu store, make sure to put on your biggest festive smile, as one special Christmas cracker is also being handed out to a customer each day.
Inside the so-called its’mas crackers are a joke, sticker, Christmas hat and exclusive prize, which range from free Christmas cracker gyoza portions to an itsu pink card, which gives you a year's worth of half price itsu. Please Itsu, we've been really good this year...


| invTranPlot {car} | R Documentation |
invTranPlot
draws a two-dimensional scatterplot of Y versus
X, along with the OLS
fit from the regression of Y on
(X?^(lam)-1)/lam. invTranEstimate
finds the nonlinear least squares estimate of lambda and its
standard error.
invTranPlot(x, ...) ## S3 method for class 'formula' invTranPlot(x, data, subset, na.action, id=FALSE, ...) ## Default S3 method: invTranPlot(x, y, lambda=c(-1, 0, 1), robust=FALSE, lty.lines=rep(c("solid", "dashed", "dotdash", "longdash", "twodash"), length=1 + length(lambda)), lwd.lines=2, col=carPalette()[1], col.lines=carPalette(), xlab=deparse(substitute(x)), ylab=deparse(substitute(y)), family="bcPower", optimal=TRUE, key="auto", id=FALSE, grid=TRUE, ...) invTranEstimate(x, y, family="bcPower", confidence=0.95, robust=FALSE)
x |
The predictor variable, or a formula with a single response and a single predictor |
y |
The response variable |
data |
An optional data frame to get the data for the formula |
subset |
Optional, as in |
na.action |
Optional, as in |
lambda |
The powers used in the plot. The optimal power than minimizes
the residual sum of squares is always added unless optimal is |
robust |
If |
family |
The transformation family to use, |
confidence |
returns a profile likelihood confidence interval for the optimal
transformation with this confidence level. If |
optimal |
Include the optimal value of lambda? |
lty.lines |
line types corresponding to the powers |
lwd.lines |
the width of the plotted lines, defaults to 2 times the standard |
col |
color(s) of the points in the plot. If you wish to distinguish points
according to the levels of a factor, we recommend using symbols, specified with
the |
col.lines |
color of the fitted lines corresponding to the powers. The
default is to use the colors returned by |
key |
The default is |
xlab |
Label for the horizontal axis. |
ylab |
Label for the vertical axis. |
id |
controls point identification; if |
... |
Additional arguments passed to the plot method, such as |
grid |
If TRUE, the default, a light-gray background grid is put on the graph |
invTranPlot
plots a graph and returns a data frame with lam in the
first column, and the residual sum of squares from the regression
for that lam in the second column.
invTranEstimate
returns a list with elements lambda
for the
estimate, se
for its standard error, and RSS
, the minimum
value of the residual sum of squares.
Sanford Weisberg<EMAIL_ADDRESS>Fox, J. and Weisberg, S. (2011) An R Companion to Applied Regression, Second Edition, Sage.
Prendergast, L. A., & Sheather, S. J. (2013) On sensitivity of inverse response plot estimation and the benefits of a robust estimation approach. Scandinavian Journal of Statistics, 40(2), 219-237.
Weisberg, S. (2014) Applied Linear Regression, Fourth Edition, Wiley, Chapter 7.
with(UN, invTranPlot(ppgdp, infantMortality)) with(UN, invTranEstimate(ppgdp, infantMortality))


{% extends 'base-err.html' %} {% block page_title %}Error 543{% endblock page_title %} {% block body_content %}
A data error has occurred. Please try again in a few minutes.
Contact<EMAIL_ADDRESS>if the issue does not resolve.
{% include "_common/direct-links.html" %} {% endblock body_content %}


WE'RE GONNA DO WHAT THEY SAY CAN'T BE DONE
Social entrepreneurs current and future -- let's meet, share our ideas, and work together to build an active community of social entrepreneurs.
If you're interested in starting a chapter in your city just
Imagine That is focused on making cities better by starting conversations around good ideas.
If you're looking to help with money, food, drinks or time then reach out and


How does women's right relate to acceptance of homosexuality?
Here the dataset is bigger,with added Gapminder data. The data in Gapminder covers more countries and is of different nature. To add them to my parallel coordinate visualization, I calculated the average of each variable, counting only the available years of each period (the waves determined by World Value Survey). The added variables are related to education and violence, which is a indicator of how integrated into a society women are.
Years in School (YS)
The average number of years of school attended by all women between 15 and 44. I made an average of the years in the periods.
Primary Completion Rate (PC)
Percentage of female students completing the last year of primary school. I made an average of the years in the periods.
Ratio of young literate females to males (LW)
Ratio of young literate females to males is the percentage of females to males ages 15-24 who can, with understanding, read and write a short, simple statement on their everyday life. I made an average of the years in the periods.
Ratio of girls to boys in primary and secondary education (%) (GBR)
Average between the avaiable years in the periods.
Suicide Among Women (SW)
Mortality due to self-inflicted injury among women, per 100 000 standard population. I made an average of the years in the periods.
Murdered women (MW)
Mortality among women due to inter-personal violence, per 100 000 standard population. I made an average of the years in the periods.
Contraceptive Methods (CM)
The percentage of women who are practicing, or whose sexual partners are practicing, any form of contraception. It is usually measured for married women ages 15-49 only. I made an average of the years in the periods.
With the data, I used d3 to create visualizations. I chose again Parallel Coordinates, so the correlations could be easily spotted. My code is largely based on this one. This visualization is interesting because the user has access to both parallel coordinates and table or results. It also allows the user to reorder axis, flip values, and brush results. The table is updated as the user interact with the visualization.
Again, we can see some correlations. For example, in this image we can see both Sweden and Spain highlited, for the period 2010-2014. They are countries with high V40 score (that means no issue with homosexual neighbors). What we can see is that both lines follow the same pattern and in all the variables these countries are the ones with better equality for woman.
And here we have selected Yemen, with the avaiable data for 1999 to 2004. As we can see, the society has a low acceptance of homosexual neighbors, a high rate of women murder, and a low girl/boy rate at school. This is an indicative of how the conservative the country is, with less acceptance of homosexuality and women's rights.


Dear Sir, First I must solicit your strictest confidence in this transaction and I pray that my contacting you will be given genuine approval considering the fact that we don't know each other before. I wish to use this opportunity to introduce myself to you. I am mike kamokai, I am writing to inform you of my desire to invest, and to buy a house in your country. I am the first son of Chief Joseph kamokai who was the former Para month ruler of saradungu village of Sierra-Leone .my father was attacked by the R U F rebels on his way to Lucia a northern part of Sierra-Leone and my father sustained injuries and he died three days. Before he died he revealed to me about the two boxes containing $50 million u s dollars. Which he deposited with a security company in Ghana for safe keeping. My father did not disclose the content of the boxes to the security company. To avoid the officials from raising eye brows. Presently I and my mother are here in Ghana to notify the security company of the claims, and we are staying in the refugee camp. Therefore I want you to lecture me on how best we can invest this money in your country, because my father told me that it is dangerous to invest in Africa to avoid suspicions, and due to market instabilities coupled with economic and political situation facing Africa for your assistance myself and my mother have agreed to offer you 20% of the total amount of the money. We have all the vital documents covering the deposit and the ownership which I can send to you. . Note, I have never disclosed this transaction to anybody apart from you. So please keep it very very confidential. Call me on this number line<PHONE_NUMBER>4480. Thanks. Best regards. Mike kamokai


/* This file is part of Ext JS 4 Copyright (c) 2011 Sencha Inc Contact: http://www.sencha.com/contact Commercial Usage Licensees holding valid commercial licenses may use this file in accordance with the Commercial Software License Agreement provided with the Software or, alternatively, in accordance with the terms contained in a written agreement between you and Sencha. If you are unsure which license is appropriate for your use, please contact the sales department at http://www.sencha.com/contact. */ /** * A custom drag proxy implementation specific to {@link Ext.panel.Panel}s. This class * is primarily used internally for the Panel's drag drop implementation, and * should never need to be created directly. * @private */ Ext.define('Ext.panel.Proxy', { alternateClassName: 'Ext.dd.PanelProxy', /** * Creates new panel proxy. * @param {Ext.panel.Panel} panel The {@link Ext.panel.Panel} to proxy for * @param {Object} [config] Config object */ constructor: function(panel, config){ /** * @property panel * @type Ext.panel.Panel */ this.panel = panel; this.id = this.panel.id +'-ddproxy'; Ext.apply(this, config); }, /** * @cfg {Boolean} insertProxy * True to insert a placeholder proxy element while dragging the panel, false to drag with no proxy. * Most Panels are not absolute positioned and therefore we need to reserve this space. */ insertProxy: true, // private overrides setStatus: Ext.emptyFn, reset: Ext.emptyFn, update: Ext.emptyFn, stop: Ext.emptyFn, sync: Ext.emptyFn, /** * Gets the proxy's element * @return {Ext.Element} The proxy's element */ getEl: function(){ return this.ghost.el; }, /** * Gets the proxy's ghost Panel * @return {Ext.panel.Panel} The proxy's ghost Panel */ getGhost: function(){ return this.ghost; }, /** * Gets the proxy element. This is the element that represents where the * Panel was before we started the drag operation. * @return {Ext.Element} The proxy's element */ getProxy: function(){ return this.proxy; }, /** * Hides the proxy */ hide : function(){ if (this.ghost) { if (this.proxy) { this.proxy.remove(); delete this.proxy; } // Unghost the Panel, do not move the Panel to where the ghost was this.panel.unghost(null, false); delete this.ghost; } }, /** * Shows the proxy */ show: function(){ if (!this.ghost) { var panelSize = this.panel.getSize(); this.panel.el.setVisibilityMode(Ext.Element.DISPLAY); this.ghost = this.panel.ghost(); if (this.insertProxy) { // bc Panels aren't absolute positioned we need to take up the space // of where the panel previously was this.proxy = this.panel.el.insertSibling({cls: Ext.baseCSSPrefix + 'panel-dd-spacer'}); this.proxy.setSize(panelSize); } } }, // private repair: function(xy, callback, scope) { this.hide(); if (typeof callback == "function") { callback.call(scope || this); } }, /** * Moves the proxy to a different position in the DOM. This is typically * called while dragging the Panel to keep the proxy sync'd to the Panel's * location. * @param {HTMLElement} parentNode The proxy's parent DOM node * @param {HTMLElement} [before] The sibling node before which the * proxy should be inserted (defaults to the parent's last child if not * specified) */ moveProxy : function(parentNode, before){ if (this.proxy) { parentNode.insertBefore(this.proxy.dom, before); } } });


{{batch.name}} ({{batch.startDate}} - {{batch.endDate || 'present'}})
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info This is instructor-led classroom course and is not available online.
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Ensure that caution is exercised when manipulating sensitive data, and that the data is not cached on the client.
Sensitive data that is cached on the client can cause significant problems:
Loss of synchronization with the server. The server's data might change and become inconsistent with the cached data. This is not a security risk but could cause issues with the application's performance.
The cache may reside on the client following the application's lifespan. Once the application is closed, the cache may be readable by an attacker, leaking sensitive information. This is especially serious in cases where the client is a non-trusted environment, such as a shared computer. Attackers may look up the "Temporary Internet Files" or corresponding browser cache and uncover useful fragments of information pertaining to the last logged on user.
Caching is a mechanism of storing temporary data to avoid frequent server access, which improves an application's performance. There are three types of web caches:
Browser caches: Browser caches let your application's users set aside a section of their computers’ hard disk to store any web data that they have previously obtained. This type of caching is typically useful when a user is reviewing previously visited pages or performing offline browsing.
Proxy caches: Web proxy caches perform like the browser caches but on a larger scale. Typically deployed by network administrators, proxy servers allow hundreds or thousands of users to improve their browsing experience by caching data that is common for all users. Because proxy caches are shared, they are very good at reducing latency and network traffic.
Gateway caches: Also known as "reverse proxy caches" or "surrogate caches", gateway caches improve the performance of your application at the server level. Typically deployed by application administrators, these caches serve to make web applications more scalable and reliable, as well as improve performance.
Because caching is a very useful mechanism, developers try to cache as much data as possible. However, this is a downfall when your application serves sensitive data. Use the following steps to ensure that your application does not perform caching when handling sensitive data:
Identify sensitive data. Sensitive data is any information that is kept secret and should be disclosed only to authorized parties. Common examples of sensitive data include, but are not limited to, customer names, government issued ID numbers, credit card and other financial information, passwords, and private keys. Some industries, such as health care and banking, have regulatory standards that define sensitive information. Use regulatory requirements as they apply to your application to identify sensitive data. Sensitive data can be defined as follows:
Ensure that HTTP headers and meta tags are used to prevent caching. Ensure that the following techniques are used:
Verify that sensitive data is not stored in hidden fields or script variables. Check all hidden fields and client-side scripts in your application. Verify that no sensitive data is stored in a hidden field or a script variable. Ensure all sensitive data that needs to be passed back to the application is stored inside server-side sessions.
An example of storing sensitive data into hidden fields:
<input type="hidden" name="ccNum" value="4111111111111111">
Verify that autocomplete attributes are used. Autocomplete should be disabled for input fields used for sensitive information. This will prevent users' browsers from caching the information. To disable autocomplete, set the "autocomplete" attribute to "off". For example:
<input type="password" name="pass" autocomplete="off" />
Javascript variables and hidden input fields must not be used to store sensitive data, which may be rendered invalid. The only thing that may be stored on the client side across browser requests should be the Session ID. Session IDs are most often stored in an HTTP cookie, though other solutions exist.
Autocomplete should be disabled for input fields used for sensitive information. This will prevent users' browsers from caching the information. To disable autocomplete, set the "autocomplete" attribute to "off". For example:
<input type="password" name="pass" autocomplete="off" />
Web pages containing sensitive data should be marked as such, using appropriate meta tags, to prevent caching. When generating/serving the web page, add the appropriate HTTP headers. This will serve as a guideline to proxies and browsers alike that the data must not be cached. A possibly negative impact of this is the invalidation of the browser "back" button.
Examples of the appropriate META tags and HTTP headers are below:
Caching META tags:
<HTML>
<HEAD>
<META HTTP-EQUIV="CACHE-CONTROL" CONTENT="NO-CACHE">
<META HTTP-EQUIV="PRAGMA" CONTENT="NO-CACHE">
<META HTTP-EQUIV="EXPIRES" CONTENT="-1">
...
</HEAD>
<BODY>
...
</BODY>
</HTML>
Caching HTTP Headers (an example of a Global.scala class):
import play.api._
import play.api.mvc._
import play.api.http.HeaderNames._
/**
* Global application settings.
*/
object Global extends GlobalSettings {
/**
* Global action composition.
*/
override def doFilter(action: EssentialAction): EssentialAction = EssentialAction { request =>
action.apply(request).map(_.withHeaders(
PRAGMA -> "no-cache"
Cache-Control -> "no-cache"
Expires -> "-1"
))
}
}


{% extends "layout.html" %} {% block page_title %} GOV.UK prototyping kit {% endblock %} {% block content %} BETA This is a new service – your feedback will help us to improve it. Back to sections you must complete Check what you’re reporting You must include a business name You must include an address You must include a town or city You must include a postal code You must include a country Your overseas hazardous waste transfers Which company transported this waste for you? You must include a business name Business name You must include an address Address line 1 Address line 2 (optional) You must include a town or city Town or city You must include a postal code Postal code You must include a country Country {% endblock %}
BETA This is a new service – your feedback will help us to improve it.


--- layout: post title: "In the News: So We've Been Thinking" date: 2018-09-06 15:15:00 +0000 tags: image: https://s3.amazonaws.com/audreywatters/2017-11-03-news.jpg imagecredits: https://www.flickr.com/photos/62693815@N03/6277209256 ---
I was a guest on Episode 10 of the So We’ve Been Thinking podcast, where I chatted with hosts Shawn McCusker and Greg Kulowiec on the history of education technology. We also chatted about behaviorism, surveillance, labor, the promise of automation, and the continued insistence that students do ridiculously pointless assignments.


{% extends "layout_wide.html" %} {% block content %}
All bugs and vulnerabilities should be reported to<EMAIL_ADDRESS>or to pipermerriam on gitter chat.
Any security related issues will be eligible for a bounty ranging from 10-100 ether depending on the severity of the exploit. The bounty is subject to the following restrictions.
Happy Hunting!


Nintendo 'Indie World' Presentation Announced For Tuesday 10th December
It's Nindie Direct time!
by Ryan CraddockNintendo has revealed that it will be livestreaming an Indie World video presentation tomorrow, 10th December.
The show will kick off at 6pm UK time / 7pm CET (so that's 10am PT / 1pm ET). It'll feature "roughly 20 minutes of information on some upcoming indie games" for Switch.
Naturally, we'll make sure to host the show right here at Nintendo Life, so make sure to come along, watch, and chat about all the announcements as they happen.
What do you want to see? Any particular games or franchises you're hoping will come to Switch? Let us know in the comments below.


{% load staticfiles %} {% load widget_tweaks %}
Rholang is a language for writing smart contracts that run on the RChain virtual machine.
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Across: 1. Former Tory head worker is still alive (6) 4. Bachelor in scruffy coats may be hot (7) 9. Excellent prize may be worth paying for (4 5) 10. I am taken in by fat landlord (5) 11. Local returns, circling bull (5) 12. "Scotsman" editor on road back to country (9) 13. Short answer in complex parliamentary report (7) 15. Was wrong, but exact (6) 17. Driven to Free House (6) 19. Small creature found in River Thames (7) 22. Rommel sat in a whirl! (9) 24. In Lepanto, as I said, one may find water (5) 26. I hear disclosures about vegetables (5) 27. Annoy a horse party about to return thanks (9) 28. Illness picked up from seaside (7) 29. Part of emergency Prussian force is in island (6) Down: 1. Mistakenly shelling out one pound for tongue (7) 2. Spike's t-trumpet (5) 3. Pan-boy's place is not at all light! (9) 4. Acre let to provide syrup (7) 5. Packed up b-beer with Penny (5) 6. Thread maker may be in step around 11 (9) 7. Familiar term for ancient race? (3 3) 8. Made responsible for bedlam? (6) 14. No hooter about one? Very quiet! (9) 16. Speed set by artist on track may not last for long (9) 18. Tell the tale of return of visitor to island (7) 19. Silver is placed in house as tribute (6) 20. Redhead Jane joined Bob for bacon... (7) 21. ...Bob went in front after motorway and grinned (6) 23. Russian boy remains in South Africa (5) 25. I am in the lead in flight! (5)


Wet weather plays havoc in Southland
Southland club cricketers have had a frustrating start to the season, with wet weather playing havoc during the past three weekends.
Cricket was played on Saturday but only three games were completed.
In the ILT Premier League, Southland Boys High and Appleby played on the main oval at Queens Park.
Appleby posted 196, including a 125-run partnership for the fourth wicket between Ankit Pursharthy (70) and Khanin Saikia (64).
Both were stumped by Benji Culhane off Hayden Hart’s left arm spin-bowling. Hart took five for 25 from eight overs.
The match was abandoned two overs into the second innings.
On ground two at Queens Park, Metropolitan scored 119. Isaac Fleury and Jason Osbourne both scored 31. Jason Milne took five for 16 off eight overs for Marist.
Metro’s opening bowlers Jason Osbourne and Zak Kelly tore through the Marist top order, with the first three batsmen out without scoring. Marist was 22 for six when it was saved by the rain. Osbourne had taken four wickets for 10 runs.
The match between Waikoikoi and Old Boys did not get started.
In division one, Te Anau had a thrilling win over Central Western. Central’s James Wadsworth (58) and John White (60) helped their side to 155. In reply Alex Webster (59) and Jimmy Corbett (50) had the locals cruising at 137 for three.
But the team stuttered to a win with three balls and two wickets to spare.
Old Boys B beat Albion by 97 runs at Hamilton Park in Gore. Charanjeet Saini (58), Gursharan Athwal (35) and Simran Singh (29) helped set a total of 214 from 40 overs for Old Boys.
Graham Waddell and Sparks player Ella Brown took three wickets each for Albion.
For Albion, only Steve Waddell and John Steeghs reached the 20s. Brown was not out on 12 when her team was dismissed for 117.
The match between Appleby B and Wyndale was abandoned.
In division two the only match to be completed was in Riversdale. Central Western B batted first and scored 154 for seven from its 40 overs. Riversdale was dismissed for 114 in reply.
- John Langford


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MIToS implements several useful scripts to command line execution (without requiring Julia coding). All this scripts are located in the scripts
folder of the MIToS directory. You can copy them to your working directory, used the path to their folder or put them in the path (look into the Installation section of this manual).
;Buslje09.jl -h
usage: Buslje09.jl [-l] [-o OUTPUT] [-p PARALLEL] [-f FORMAT] [-L LAMBDA] [-c] [-i THRESHOLD] [-g MAXGAP] [-a] [-s SAMPLES] [-G] [-F] [--version] [-h] [FILE] This takes a MSA file as input. Calculates and saves on *.busjle09.csv a Z score and a corrected MI/MIp as described on: Buslje, C. M., Santos, J., Delfino, J. M., & Nielsen, M. (2009). Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information. Bioinformatics, 25(9), 1125-1131. positional arguments: FILE File name. If it is not used, the script reads from STDIN. optional arguments: -l, --list The input is a list of file names. If -p is used, files will be processed in parallel. -o, --output OUTPUT Name of the output file. Output will be gzip if the extension is ".gz". If it starts with a dot, the name is used as a suffix or extension of the input filename. If it ends with a dot, is used as a prefix. If the output name starts and ends with dots, it's used as an interfix before the extension.If a single file is used and there is not a file name (STDIN), the output will be print into STDOUT, unless a output filename is used. You can use "STDOUT" to force print into STDOUT. STDOUT can not be use with --list. (default: ".busjle09.csv") -p, --parallel PARALLEL Number of worker processes. (type: Int64, default: 1) -f, --format FORMAT Format of the MSA: Stockholm, Raw or FASTA (default: "Stockholm") -L, --lambda LAMBDA Low count value (type: Float64, default: 0.05) -c, --clustering Sequence clustering (Hobohm I) -i, --threshold THRESHOLD Percent identity threshold for sequence clustering (Hobohm I) (type: Float64, default: 62.0) -g, --maxgap MAXGAP Maximum fraction of gaps in positions included in calculation (type: Float64, default: 0.5) -a, --apc Use APC correction (MIp) -s, --samples SAMPLES Number of samples for Z-score (type: Int64, default: 100) -G, --usegap Use gaps on statistics -F, --fixedgaps Fix gaps positions for the random samples --version show version information and exit -h, --help show this help message and exit MIToS 1.1.0+ Bioinformatics Unit Leloir Institute Foundation Av. Patricias Argentinas 435, CP C1405BWE, Buenos Aires, Argentina
;BLMI.jl -h
usage: BLMI.jl [-l] [-o OUTPUT] [-p PARALLEL] [-f FORMAT] [-b BETA] [-i THRESHOLD] [-g MAXGAP] [-a] [-s SAMPLES] [-F] [--version] [-h] [FILE] This takes a MSA file as input. Calculates and saves on *.BLMI.csv a Z score and a corrected MI/MIp. The script uses BLOSUM62 based pseudo frequencies and sequences clustering (Hobohm I). positional arguments: FILE File name. If it is not used, the script reads from STDIN. optional arguments: -l, --list The input is a list of file names. If -p is used, files will be processed in parallel. -o, --output OUTPUT Name of the output file. Output will be gzip if the extension is ".gz". If it starts with a dot, the name is used as a suffix or extension of the input filename. If it ends with a dot, is used as a prefix. If the output name starts and ends with dots, it's used as an interfix before the extension.If a single file is used and there is not a file name (STDIN), the output will be print into STDOUT, unless a output filename is used. You can use "STDOUT" to force print into STDOUT. STDOUT can not be use with --list. (default: ".BLMI.csv") -p, --parallel PARALLEL Number of worker processes. (type: Int64, default: 1) -f, --format FORMAT Format of the MSA: Stockholm, Raw or FASTA (default: "Stockholm") -b, --beta BETA β for BLOSUM62 pseudo frequencies (type: Float64, default: 8.512) -i, --threshold THRESHOLD Percent identity threshold for sequence clustering (Hobohm I) (type: Float64, default: 62.0) -g, --maxgap MAXGAP Maximum fraction of gaps in positions included in calculation (type: Float64, default: 0.5) -a, --apc Use APC correction (MIp) -s, --samples SAMPLES Number of samples for Z-score (type: Int64, default: 50) -F, --fixedgaps Fix gaps positions for the random samples --version show version information and exit -h, --help show this help message and exit MIToS 1.1.0+ Bioinformatics Unit Leloir Institute Foundation Av. Patricias Argentinas 435, CP C1405BWE, Buenos Aires, Argentina
;DownloadPDB.jl -h
usage: DownloadPDB.jl [-c CODE] [-l LIST] [-f FORMAT] [--version] [-h] Download gzipped files from PDB. optional arguments: -c, --code CODE PDB code -l, --list LIST File with a list of PDB codes (one per line) -f, --format FORMAT Format. It should be PDBFile (pdb) or PDBML (xml) (default: "PDBML") --version show version information and exit -h, --help show this help message and exit MIToS 1.1.0+ Bioinformatics Unit Leloir Institute Foundation Av. Patricias Argentinas 435, CP C1405BWE, Buenos Aires, Argentina
;Distances.jl -h
usage: Distances.jl [-l] [-o OUTPUT] [-p PARALLEL] [-d DISTANCE] [-f FORMAT] [-m MODEL] [-c CHAIN] [-g GROUP] [-i] [--version] [-h] [FILE] Calculates residues distance and writes them into a *.distances.csv.gz gzipped file. positional arguments: FILE File name. If it is not used, the script reads from STDIN. optional arguments: -l, --list The input is a list of file names. If -p is used, files will be processed in parallel. -o, --output OUTPUT Name of the output file. Output will be gzip if the extension is ".gz". If it starts with a dot, the name is used as a suffix or extension of the input filename. If it ends with a dot, is used as a prefix. If the output name starts and ends with dots, it's used as an interfix before the extension.If a single file is used and there is not a file name (STDIN), the output will be print into STDOUT, unless a output filename is used. You can use "STDOUT" to force print into STDOUT. STDOUT can not be use with --list. (default: ".distances.csv.gz") -p, --parallel PARALLEL Number of worker processes. (type: Int64, default: 1) -d, --distance DISTANCE The distance to be calculated, options: All, Heavy, CA, CB (default: "All") -f, --format FORMAT Format of the PDB file: It should be PDBFile or PDBML (default: "PDBFile") -m, --model MODEL The model to be used, * for all (default: "1") -c, --chain CHAIN The chain to be used, * for all (default: "*") -g, --group GROUP Group of atoms to be used, should be ATOM, HETATM or * for all (default: "*") -i, --inter Calculate inter chain distances --version show version information and exit -h, --help show this help message and exit MIToS 1.1.0+ Bioinformatics Unit Leloir Institute Foundation Av. Patricias Argentinas 435, CP C1405BWE, Buenos Aires, Argentina
;MSADescription.jl -h
usage: MSADescription.jl [-l] [-o OUTPUT] [-p PARALLEL] [-f FORMAT] [-e] [--version] [-h] [FILE] Creates an *.description.csv from a Stockholm file with: the number of columns, sequences, clusters after Hobohm clustering at 62% identity and mean percent identity. Also the mean, standard deviation and quantiles of: sequence coverage of the MSA, gap percentage. positional arguments: FILE File name. If it is not used, the script reads from STDIN. optional arguments: -l, --list The input is a list of file names. If -p is used, files will be processed in parallel. -o, --output OUTPUT Name of the output file. Output will be gzip if the extension is ".gz". If it starts with a dot, the name is used as a suffix or extension of the input filename. If it ends with a dot, is used as a prefix. If the output name starts and ends with dots, it's used as an interfix before the extension.If a single file is used and there is not a file name (STDIN), the output will be print into STDOUT, unless a output filename is used. You can use "STDOUT" to force print into STDOUT. STDOUT can not be use with --list. (default: ".description.csv") -p, --parallel PARALLEL Number of worker processes. (type: Int64, default: 1) -f, --format FORMAT Format of the MSA: Stockholm, Raw or FASTA (default: "Stockholm") -e, --exact If it's true, the mean percent identity is exact (using all the pairwise comparisons). --version show version information and exit -h, --help show this help message and exit MIToS 1.1.0+ Bioinformatics Unit Leloir Institute Foundation Av. Patricias Argentinas 435, CP C1405BWE, Buenos Aires, Argentina
;PercentIdentity.jl -h
usage: PercentIdentity.jl [-l] [-o OUTPUT] [-p PARALLEL] [-f FORMAT] [-s] [--version] [-h] [FILE] Calculates the percentage identity between all the sequences of an MSA and creates an *.pidstats.csv file with: The number of columns and sequences. The mean, standard deviation, median, minimum and maximum values and first and third quantiles of the percentage identity. It could also create and pidlist.csv file with the percentage identity for each pairwise comparison. positional arguments: FILE File name. If it is not used, the script reads from STDIN. optional arguments: -l, --list The input is a list of file names. If -p is used, files will be processed in parallel. -o, --output OUTPUT Name of the output file. Output will be gzip if the extension is ".gz". If it starts with a dot, the name is used as a suffix or extension of the input filename. If it ends with a dot, is used as a prefix. If the output name starts and ends with dots, it's used as an interfix before the extension.If a single file is used and there is not a file name (STDIN), the output will be print into STDOUT, unless a output filename is used. You can use "STDOUT" to force print into STDOUT. STDOUT can not be use with --list. (default: ".pidstats.csv") -p, --parallel PARALLEL Number of worker processes. (type: Int64, default: 1) -f, --format FORMAT Format of the MSA: Stockholm, Raw or FASTA (default: "Stockholm") -s, --savelist Create and pidlist.csv file with the percentage identity for each pairwise comparison. --version show version information and exit -h, --help show this help message and exit MIToS 1.1.0+ Bioinformatics Unit Leloir Institute Foundation Av. Patricias Argentinas 435, CP C1405BWE, Buenos Aires, Argentina
;AlignedColumns.jl -h
usage: AlignedColumns.jl [-l] [-o OUTPUT] [-p PARALLEL] [--version] [-h] [FILE] Creates a file in Stockholm format with the aligned columns from a Pfam Stockholm file. Insertions are deleted, as they are unaligned in a proﬁle HMM. The output file *.aligned.* contains UniProt residue numbers and original column numbers in its annotations. positional arguments: FILE File name. If it is not used, the script reads from STDIN. optional arguments: -l, --list The input is a list of file names. If -p is used, files will be processed in parallel. -o, --output OUTPUT Name of the output file. Output will be gzip if the extension is ".gz". If it starts with a dot, the name is used as a suffix or extension of the input filename. If it ends with a dot, is used as a prefix. If the output name starts and ends with dots, it's used as an interfix before the extension.If a single file is used and there is not a file name (STDIN), the output will be print into STDOUT, unless a output filename is used. You can use "STDOUT" to force print into STDOUT. STDOUT can not be use with --list. (default: ".aligned.") -p, --parallel PARALLEL Number of worker processes. (type: Int64, default: 1) --version show version information and exit -h, --help show this help message and exit MIToS 1.1.0+ Bioinformatics Unit Leloir Institute Foundation Av. Patricias Argentinas 435, CP C1405BWE, Buenos Aires, Argentina
;SplitStockholm.jl -h
usage: SplitStockholm.jl [-p PATH] [--version] [-h] file Splits a file with multiple sequence alignments in Stockholm format, creating one compressed file per MSA in Stockholm format: accessionumber.gz positional arguments: file Input file optional arguments: -p, --path PATH Path for the output files [default: execution directory] (default: "") --version show version information and exit -h, --help show this help message and exit MIToS 1.1.0+ Bioinformatics Unit Leloir Institute Foundation Av. Patricias Argentinas 435, CP C1405BWE, Buenos Aires, Argentina


WITNESS LIST Elections Committee (Subcommittee on UNIFORM ELECTION DATES) March 24, 1999-2:30P HB 736 For: BORDEN, BILL (Self) PEREZ, J.R. (Self and THE TEXAS ASSOCIATION OF ELECTION ADMINISTRATORS) SHEA, MELISSA (COMMON CAUSE TEXAS) Against: DEERING, ALYCE E. (Self and TML) DOUGLASS, CATHY (TEXAS ASSOC OF SCHOOL BOARDS) HB 737 For: DOUGLAS, CATHY (TX ASSOC OF SCHL BD) SHEA, MELISSA (COMMON CAUSE TEXAS) Against: BORDEN, BILL (Self) PEREZ, J.R. (Self and THE TEXAS ASSOCIATION OF ELECTIONS ADMINISTRATORS) On: SIRVELLO, TONY J. (Self and BEVERLY B. KAUFMAN; HARRIS COUNTY CLERK)


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Is your Toon in need of a break from dropping safes on unsuspecting Robber Barons? Maybe you need a Laff boost or need to earn some jellybeans? Time to head for one of Toontown’s ponds to do some fishing!
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When your Toon is ready to go fishing, just step up to any unoccupied pier at any pond. There are ponds in every playground and on every street, as well as a pond at your Toon’s estate. Stop by the harbor in Donald’s Dock - there are fish to be caught here, too!
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Toon Tip: Your Toon will be using Jellybeans as bait, so make sure you have a few beans in your jar before you step up to a pier.
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Step up to the pier and your Toon will get in position to cast his line. Watch the shadows in the water - these are fish just waiting to be caught. Click and hold down the red "cast" button in the center of the screen. With the button down, move your mouse to determine where you want to drop your fishing line. When you’re ready, release the "cast" button.
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Your Toon has a bucket that can hold up to 20 fish at a time. When your bucket is full, take it to the nearest Pet Shop Clerk. They’ll be happy to take your fish - and pay you for your hard work in Jellybeans!
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The table is created by a primary thread (the python main thread)
but all future lookups and updates are performed by a secondary
thread.
| def google.appengine.tools.bulkloader._Database.__init__ |
( |
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self, |
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db_filename, |
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create_table, |
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signature, |
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index = None , |
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commit_periodicity = 100 |
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) |
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Initialize the _Database instance.
Args:
db_filename: The sqlite3 file to use for the database.
create_table: A string containing the SQL table creation command.
signature: A string identifying the important invocation options,
used to make sure we are not using an old database.
index: An optional string to create an index for the database.
commit_periodicity: Number of operations between database commits.
| def google.appengine.tools.bulkloader._Database.ThreadComplete |
( |
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self | ) |
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Finalize any operations the secondary thread has performed.
The database aggregates lots of operations into a single commit, and
this method is used to commit any pending operations as the thread
is about to shut down.
The documentation for this class was generated from the following file:
- code/googleappengine-read-only/python/google/appengine/tools/bulkloader.py


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Comments
-
Greg Hurrell
I've been playing with this outside of MacVim and I've noticed that
redraw
and evenredraw!
aren't clearing the prompt any more (even with that commit reverted).
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