#include <SFML/Graphics/Export.h>
#include <SFML/Graphics/Rect.h>
#include <SFML/Graphics/Types.h>
#include <SFML/System/Vector2.h>
Go to the source code of this file.
Data Structures | |
| struct | sfTransform |
| Encapsulate a 3x3 transform matrix. More... | |
Functions | |
| CSFML_GRAPHICS_API sfTransform | sfTransform_fromMatrix (float a00, float a01, float a02, float a10, float a11, float a12, float a20, float a21, float a22) |
| Create a new transform from a matrix. More... | |
| CSFML_GRAPHICS_API void | sfTransform_getMatrix (const sfTransform *transform, float *matrix) |
| Return the 4x4 matrix of a transform. More... | |
| CSFML_GRAPHICS_API sfTransform | sfTransform_getInverse (const sfTransform *transform) |
| Return the inverse of a transform. More... | |
| CSFML_GRAPHICS_API sfVector2f | sfTransform_transformPoint (const sfTransform *transform, sfVector2f point) |
| Apply a transform to a 2D point. More... | |
| CSFML_GRAPHICS_API sfFloatRect | sfTransform_transformRect (const sfTransform *transform, sfFloatRect rectangle) |
| Apply a transform to a rectangle. More... | |
| CSFML_GRAPHICS_API void | sfTransform_combine (sfTransform *transform, const sfTransform *other) |
| Combine two transforms. More... | |
| CSFML_GRAPHICS_API void | sfTransform_translate (sfTransform *transform, float x, float y) |
| Combine a transform with a translation. More... | |
| CSFML_GRAPHICS_API void | sfTransform_rotate (sfTransform *transform, float angle) |
| Combine the current transform with a rotation. More... | |
| CSFML_GRAPHICS_API void | sfTransform_rotateWithCenter (sfTransform *transform, float angle, float centerX, float centerY) |
| Combine the current transform with a rotation. More... | |
| CSFML_GRAPHICS_API void | sfTransform_scale (sfTransform *transform, float scaleX, float scaleY) |
| Combine the current transform with a scaling. More... | |
| CSFML_GRAPHICS_API void | sfTransform_scaleWithCenter (sfTransform *transform, float scaleX, float scaleY, float centerX, float centerY) |
| Combine the current transform with a scaling. More... | |
Variables | |
| CSFML_GRAPHICS_API const sfTransform | sfTransform_Identity |
| Identity transform (does nothing) More... | |
| CSFML_GRAPHICS_API void sfTransform_combine | ( | sfTransform * | transform, |
| const sfTransform * | other | ||
| ) |
Combine two transforms.
The result is a transform that is equivalent to applying transform followed by other. Mathematically, it is equivalent to a matrix multiplication.
| transform | Transform object |
| right | Transform to combine to transform |
| CSFML_GRAPHICS_API sfTransform sfTransform_fromMatrix | ( | float | a00, |
| float | a01, | ||
| float | a02, | ||
| float | a10, | ||
| float | a11, | ||
| float | a12, | ||
| float | a20, | ||
| float | a21, | ||
| float | a22 | ||
| ) |
Create a new transform from a matrix.
| a00 | Element (0, 0) of the matrix |
| a01 | Element (0, 1) of the matrix |
| a02 | Element (0, 2) of the matrix |
| a10 | Element (1, 0) of the matrix |
| a11 | Element (1, 1) of the matrix |
| a12 | Element (1, 2) of the matrix |
| a20 | Element (2, 0) of the matrix |
| a21 | Element (2, 1) of the matrix |
| a22 | Element (2, 2) of the matrix |
| CSFML_GRAPHICS_API sfTransform sfTransform_getInverse | ( | const sfTransform * | transform | ) |
Return the inverse of a transform.
If the inverse cannot be computed, a new identity transform is returned.
| transform | Transform object |
| CSFML_GRAPHICS_API void sfTransform_getMatrix | ( | const sfTransform * | transform, |
| float * | matrix | ||
| ) |
Return the 4x4 matrix of a transform.
This function fills an array of 16 floats with the transform converted as a 4x4 matrix, which is directly compatible with OpenGL functions.
| transform | Transform object |
| matrix | Pointer to the 16-element array to fill with the matrix |
| CSFML_GRAPHICS_API void sfTransform_rotate | ( | sfTransform * | transform, |
| float | angle | ||
| ) |
Combine the current transform with a rotation.
| transform | Transform object |
| angle | Rotation angle, in degrees |
| CSFML_GRAPHICS_API void sfTransform_rotateWithCenter | ( | sfTransform * | transform, |
| float | angle, | ||
| float | centerX, | ||
| float | centerY | ||
| ) |
Combine the current transform with a rotation.
The center of rotation is provided for convenience as a second argument, so that you can build rotations around arbitrary points more easily (and efficiently) than the usual [translate(-center), rotate(angle), translate(center)].
| transform | Transform object |
| angle | Rotation angle, in degrees |
| centerX | X coordinate of the center of rotation |
| centerY | Y coordinate of the center of rotation |
| CSFML_GRAPHICS_API void sfTransform_scale | ( | sfTransform * | transform, |
| float | scaleX, | ||
| float | scaleY | ||
| ) |
Combine the current transform with a scaling.
| transform | Transform object |
| scaleX | Scaling factor on the X axis |
| scaleY | Scaling factor on the Y axis |
| CSFML_GRAPHICS_API void sfTransform_scaleWithCenter | ( | sfTransform * | transform, |
| float | scaleX, | ||
| float | scaleY, | ||
| float | centerX, | ||
| float | centerY | ||
| ) |
Combine the current transform with a scaling.
The center of scaling is provided for convenience as a second argument, so that you can build scaling around arbitrary points more easily (and efficiently) than the usual [translate(-center), scale(factors), translate(center)]
| transform | Transform object |
| scaleX | Scaling factor on X axis |
| scaleY | Scaling factor on Y axis |
| centerX | X coordinate of the center of scaling |
| centerY | Y coordinate of the center of scaling |
| CSFML_GRAPHICS_API sfVector2f sfTransform_transformPoint | ( | const sfTransform * | transform, |
| sfVector2f | point | ||
| ) |
Apply a transform to a 2D point.
| transform | Transform object |
| point | Point to transform |
| CSFML_GRAPHICS_API sfFloatRect sfTransform_transformRect | ( | const sfTransform * | transform, |
| sfFloatRect | rectangle | ||
| ) |
Apply a transform to a rectangle.
Since SFML doesn't provide support for oriented rectangles, the result of this function is always an axis-aligned rectangle. Which means that if the transform contains a rotation, the bounding rectangle of the transformed rectangle is returned.
| transform | Transform object |
| rectangle | Rectangle to transform |
| CSFML_GRAPHICS_API void sfTransform_translate | ( | sfTransform * | transform, |
| float | x, | ||
| float | y | ||
| ) |
Combine a transform with a translation.
| transform | Transform object |
| x | Offset to apply on X axis |
| y | Offset to apply on Y axis |
| CSFML_GRAPHICS_API const sfTransform sfTransform_Identity |
Identity transform (does nothing)
Definition at line 52 of file Transform.h.


Project 4 - Tyler D Clark
Animate
Lighting
Door
Ground
Reset
Your browser doesn't appear to support the HTML5
<canvas>
element.
Directional light:
Direction:
X:
Y:
Z:
Color:
R:
G:
B:
Ambient light:
Color:
R:
G:
B:


PlotGuesser AI
Generate an alternate story
Give the AI a movie title and watch it generate a story based on the movie's plot.
Prompt text
Generating, please wait...

Movie was not found! Try another film.


Name : Rana Amteer
In this exercise, the idea is to write a paragraph that would be a random passage from a story. An effective paragraph is one that has unity (it isn’t a hodgepodge of things), focus (everything in the paragraph stacks up to the whatever-it-is the paragraph is about), and coherence (the content follows smoothly). For this exercise, the paragraph should be quick to read--say, not be more than 100 words long. A paragraph needn’t be several sentences long, but might be only a sentence or two, or a single line of dialogue. Or it could be a snippet of dialogue with narration:ers there to attempt the subterranean labyrinth when it had opened as a commercial venture. With the caverns’ flooding and subsequent closure, however, Skaar’s Outpost had declined into an agricultural community miles from any trade routes


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Get started with Docker Notary
Estimated reading time: 6 minutesThis document describes basic use of the Notary CLI as a tool supporting Docker Content Trust. For more advanced use cases, you must run your own Notary service. Read the use the Notary client for advanced users documentation.
Warning: Assistance with the open-source notary client or server is not provided by Docker Enterprise Customer Support.
What is Notary
Notary is a tool for publishing and managing trusted collections of content. Publishers can digitally sign collections and consumers can verify integrity and origin of content. This ability is built on a straightforward key management and signing interface to create signed collections and configure trusted publishers.
With Notary anyone can provide trust over arbitrary collections of data. Using The Update Framework (TUF) as the underlying security framework, Notary takes care of the operations necessary to create, manage, and distribute the metadata necessary to ensure the integrity and freshness of your content.
Install Notary
You can download precompiled notary binary for 64 bit Linux or macOS from the Notary repository’s Releases page on Github.
Understand Notary naming
Notary uses Globally Unique Names (GUNs) to identify trust collections. To enable Notary to run in a multi-tenant fashion, you must use this format when interacting with Docker Hub through the Notary client. When specifying Docker image names for the Notary client, the GUN format is:
- For official images (identifiable by the “Official Image” moniker), the
image name as displayed on Docker Hub, prefixed with
docker.io/library/
. For example, if you would normally typedocker pull ubuntu
you must enternotary {cmd} docker.io/library/ubuntu
. - For all other images, the image name as displayed on Docker Hub, prefixed by
docker.io
.
The Docker Engine client takes care of these name expansions for you so do not change the names you use with the Engine client or API. This is a requirement only when interacting with the same Docker Hub repositories through the Notary client.
Inspect a Docker Hub repository
The most basic operation is listing the available signed tags in a repository.
The Notary client used in isolation does not know where the trust repositories
are located. So, you must provide the -s
(or long form --server
) flag to
tell the client which repository server it should communicate with.
The official Docker Hub Notary servers are located at
https://notary.docker.io
. If you would like to use your own Notary server,
it is important to use the same or a newer
Notary version,
as the client for feature compatibility (ex: client version 0.2, server/signer version >= 0.2).
Additionally, Notary stores your own signing keys,
and a cache of previously downloaded trust metadata in a directory, provided
with the -d
flag. When interacting with Docker Hub repositories, you must
instruct the client to use the associated trust directory, which by default is
found at .docker/trust
within the calling user’s home directory (failing to
use this directory may result in errors when publishing updates to your trust
data):
$ notary -s https://notary.docker.io -d ~/.docker/trust list docker.io/library/alpine
NAME DIGEST SIZE (BYTES) ROLE
------------------------------------------------------------------------------------------------------
2.6 e9cec9aec697d8b9d450edd32860ecd363f2f3174c8338beb5f809422d182c63 1374 targets
2.7 9f08005dff552038f0ad2f46b8e65ff3d25641747d3912e3ea8da6785046561a 1374 targets
3.1 e876b57b2444813cd474523b9c74aacacc238230b288a22bccece9caf2862197 1374 targets
3.2 4a8c62881c6237b4c1434125661cddf09434d37c6ef26bf26bfaef0b8c5e2f05 1374 targets
3.3 2d4f890b7eddb390285e3afea9be98a078c2acd2fb311da8c9048e3d1e4864d3 1374 targets
edge 878c1b1d668830f01c2b1622ebf1656e32ce830850775d26a387b2f11f541239 1374 targets
latest 24a36bbc059b1345b7e8be0df20f1b23caa3602e85d42fff7ecd9d0bd255de56 1377 targets
The output shows us the names of the tags available, the hex encoded sha256 digest of the image manifest associated with that tag, the size of the manifest, and the Notary role that signed this tag into the repository. The “targets” role is the most common role in a simple repository. When a repository has (or expects) to have collaborators, you may see other “delegated” roles listed as signers, based on the choice of the administrator as to how they organize their collaborators.
When you run a docker pull
command, Docker Engine is using an integrated
Notary library (the same one as Notary CLI) to request the mapping of tag
to sha256 digest for the one tag you are interested in (or if you passed the
--all
flag, the client uses the list operation to efficiently retrieve all
the mappings). Having validated the signatures on the trust data, the client
instructs the Engine to do a “pull by digest”. During this pull, the
Engine uses the sha256 checksum as a content address to request and validate the
image manifest from the Docker registry.
Delete a tag
Notary generates and stores signing keys on the host it’s running on. This means
that the Docker Hub cannot delete tags from the trust data, they must be deleted
using the Notary client. You can do this with the notary remove
command.
Again, you must direct it to speak to the correct Notary server. Neither
you nor the author has permissions to delete tags from the official alpine
repository, so the output below is for demonstration only:
$ notary -s https://notary.docker.io -d ~/.docker/trust remove docker.io/library/alpine 2.6
Removal of 2.6 from docker.io/library/alpine staged for next publish.
In the preceding example, the output message indicates that only the removal was
staged. When performing any write operations they are staged into a change list.
This list is applied to the latest version of the trust repository the next time
a notary publish
is run for that repository.
You can see a pending change by running notary status
for the modified
repository. The status
subcommand is an offline operation and as such, does
not require the -s
flag, however it silently ignores the flag if provided.
Failing to provide the correct value for the -d
flag may show the wrong
(probably empty) change list:
$ notary -d ~/.docker/trust status docker.io/library/alpine
Unpublished changes for docker.io/library/alpine:
action scope type path
----------------------------------------------------
delete targets target 2.6
$ notary -s https://notary.docker.io publish docker.io/library/alpine
Configure the client
It is verbose and tedious to always provide the -s
and -d
flags
manually to most commands. A simple way to create preconfigured versions of the
Notary command is via aliases. Add the following to your .bashrc
or
equivalent:
alias dockernotary="notary -s https://notary.docker.io -d ~/.docker/trust"
More advanced methods of configuration, and additional options, can be found in
the configuration doc and by running notary --help
.


Advanced Topic: Automation
Gladstone/UCSF
May 2022
Add speaker notes here...
Goals and Motivations
By the end of this workshop you should be able to:
Command programmatic control over Cytoscape
Integrate Cytoscape into your bioinformatics pipelines
Publish and share Cytoscape-powered notebooks
Add speaker notes here...
Introductions
Alex Pico, Gladstone Institutes
Director, Bioinformatics Core
Executive director, National Resource for Network Biology
Cytoscape team since 2006
Co-author of over a dozen Cytoscape apps
Co-author of RCy3 Bioconductor package
Add speaker notes here...
Introductions
Yihang Xin, Gladstone Institutes
Software Engineer, National Resource for Network Biology
Cytoscape team since 2020
Co-author of Cytoscape apps
Co-author of RCy3 and py4cytoscape packages
Add speaker notes here...
Introductions
What about you?
Clinicians
Bench Biologists
Bioinformaticians
Computer Scientists
Chemists
Mathematicians
Other
Add speaker notes here...
Automation Use Cases
Here are some common automation workflows. Pick one that is similar to the type of data you work with. Follow the steps to learn about package functions.
Ask questions if anything is unclear!
Transcriptomic data :
Rmd ,
ipynb
Tumor expression and mutation data :
Rmd ,
ipynb
Proteomics data :
Rmd ,
ipynb
Wrap-up
What have we learned?
Helper packages for Cytoscape from Python and R (JS coming soon).
Load networks from STRING (also works for NDEx, WikiPathways, etc.)
Load my data as data frames from local files (also cloud: github, drive, etc.)
Perform data visualization, mapping my data to network visual properties.
Perform layouts, subnetworks, filters, and analyses (including many apps).
Export networks and publication-quality image formats.
Wrap-up
Don't forget about Notebooks!
Notebooks: ipynb and Rmd files
GitHub: ipynb and Rmd(nb.html) files
Google Colab:
Python
and R
Wrap-up
Questions and Discussion
Anything unclear?
Anything missing?
Thank You!
Here are additional resources you may find useful:
Add speaker notes here...


Creators are an integral part of DWR and are responsible for exposing the methods on Java classes to the client.
The create element in your dwr.xml file has the following structure.
<allow> <create creator="..." javascript="..." scope="..."> <param name="..." value="..."/> <auth method="..." role="..."/> <exclude method="..."/> <include method="..."/> </create> ... </allow>
Most of these elements are optional - All you really need is to specify the creator and javascript attributes.
The creator attribute is required - it specifies which creator will be used.
The following Creators are available in DWR:
Should you need to write your own creator, you must register it using the <init>
section.
The javascript attribute is required - it gives your newly created object a name in the browser. You should avoid using JavaScript reserved words.
The scope attribute is largely the same as the scope attribute as defined by the servlet spec. It allows you to specify what a bean is available to. The options are "application", "session", "request", "page" and an additional scope "script". The first 4 of these values should be familiar to Servlet and JSP developers. "script" scope allows you to have something similar to an HTTP session that is tied to an ID in a page rather than in a cookie.
The scope attribute is optional. It defaults to "page".
The param element is used by the various creators for specific bits of configuration. For example the 'new' creator needs to be told what type of object to call 'new' on. The parameters that are available to each creator are specified in the documentation for that creator. See the list above for links.
The include and exclude elements allow a creator to restrict access to class methods. A Creator should specify EITHER a list of include elements (which implies that the default policy is denial) OR a list of exclude elements (which implies that the default policy is to allow access)
For example to deny access to all methods in some class except for the setWibble()
method you should put the following into your dwr.xml
<create creator="new" javascript="Fred"> <param name="class" value="com.example.Fred"/> <include method="setWibble"/> </create>
The default visibility is that having added a class to a 'create' element, all its methods are accessible.
The auth element allows you to specify a J2EE role level for further access control checking:
<create creator="new" javascript="Fred"> <param name="class" value="com.example.Fred"/> <auth method="setWibble" role="admin"/> </create>
The none creator does not do any object creation - it makes the assumption that you don't need one. This might be true for 2 reasons.
You might be using a scope other than "page" (see above) and have arranged to pre-populate the scope with the given object. In this case no object creation is required.
Alternatively the method to call is static in which case no object is required. DWR does a check for static methods before deciding if it needs to call the creator.
For both of these options you will need a param element - "class". This tells DWR what type it is working on.
DWR does a check before calling any Creators to see if the method to be called is static. If it is then the Creator is not called. Clearly this logic will work with any creator, however the 'null' Creator is easiest to configure.
The static creator is the recommended approach for using Singletons.
An alernative approach is to create an instance of the object using BeanShell and BSF. See the section on the 'Scripted' Creator for more details.
We have occasional requests for new creators, the most common is for an EjbCreator. The best place to discuss new creators is the DWR mailing list.


Hi I'm Brian mutai
Currently taking web development course at moringa school based in Nairobi,Kenya
I took coding classes because it helped me to:
- Learn how to learn
- Think ligically and solve problems
- Become more detailed oriented
- Know how to work with others
- Realise that everyone is capable of learning how to code
I did my form four in the year 2017 which made me want more in coding which was my passion and managed to join Moringa School
Hobbies and personal interests
- Whatching movies
- Listening to music
- Dancing
- Hiking


OurMenu
Gallery
Culture
Events
Catering
Visit Us
Location
Hunger Game!!!
The following website is design and developed for online bakery
Our menu
Art of cakes
Taste so good
Perfect Pancakes
Upcoming Events
Breakfast Pancakes
Reuben Sandwich


{% extends 'base.html' %} {% block title %}Rooms{% endblock %} {% block content %} Rooms {% for room in object_list %} {{ room.name }} {{ room.description }} {% empty %} Sorry, there are currently no rooms. {% endfor %} {% endblock %}
{{ room.description }}
Sorry, there are currently no rooms.


[1]
Absolutly everything; Nothing at all.
[2]
Interface, search feature.; None so far
[3]
Very seamless, eye catching interface.; Anal security, compatibality issues.


This research area encounters how a disease changes over time as it progresses and the treatments effects on it. It uses statistical models such as the Hidden Markov Model to monitor how slow progressing diseases such as Alzheimer’s and Parkinson’s develop over time.
The process uses pattern recognition and simulations to recognise the trends in the disease and create models. These models can then be used to predict what stage a patient is in, and how the disease will progress in them.
One of the main applications is in the fields of Cancer and Tumour progression as well as HIV. The research is focused on using image analysis and machine learning to create models and graphs of data that changes and can be compared such as the set of genetic events that have taken place.
These models are then used to diagnose the disease, study individual cases and provide appropriate therapy.
The main obstacle keeping us from progressing in this field is data. This is because the diseases we loook at usually progress slowly, meaning that models require data from multiple sources collected over etended time periods. Time is therefore a critical factor in the progression of the field as a whole. Solutions to this obstacle include collaborative research, data sharing and database standardization, which in recent years we have seen notable effective collaborations between industry and regulatory agencies in the area of ALzheimer's disease modeling and simulation.
Thinking about the rising cost of healthcare has mode researchers target cost-effectiveness analysis as an increasinbly important component of assessment. At current times cost-efffectiveness analyses are ususally based upon empirical models of progression like markov models, rather than theoretical models. The latter would help as it would mean we wouldn't have to watch the disease progress in someone to identify the most cost-effective solution.
Reference
In recent research by Van Hasselt et al. a cost model was included only to demonstrate proof of concept, and thus was fairly simple. This model however could be easily expanded to cover additional costs such as follow-up hospital visits and background mortality rates. Using their new framework they simulated scenarios with different treatment protocols and patient characteristics. The impact of these changes were then evaluated with on expected efficacy and cost effectiveness. This could help lead to cheaper, and more effective treatments.
Reference


Black Friday Deals: LG G8 ThinQ for $399, LG Stylo 5 for $159
by Uzair GhaniYou can save a lot of money on some wonderful Android smartphone. This includes the LG G8 ThinQ and multiple models of the LG Stylo 5.
Black Friday Deals Offer the LG G8 ThinQ with a 53% Discount, Cheaper Options Available in LG Stylo 5 for Just $159.99
Black Friday is the time you think about upgrading your smartphone too. If that is you must do this year, then we have some nice deals from LG this time around. Once of them is on the LG G8 ThinQ, and we seriously believe that it's one hell of a smartphone thanks to its beefy specs. We're talking about its large 6.1-inch QHD display, 6GB of RAM, 128GB of internal storage, Snapdragon 855, multiple cameras on the back, a wonderful selfie camera, 3500mAh battery and more. Overall, it's a very nice flagship from LG, and with a price of just $399 instead of $849, and we don't see any reason why you shouldn't buy it today.
The second option on the list is the LG Stylo 5. Sure, it might not be as monstrous as the LG G8 ThinQ, but it still has the hallmarks of a great phone. Such as a large 6.2-inch full HD display, 3GB of RAM, a 13MP camera on the back, 5MP wide camera on the front, a 1.8GHz Snapdragon processor and Android 9 Pie. It's available in two color options as well.
- Buy LG G8 ThinQ with Alexa Hands-Free – Unlocked SMARTPHONE – 128 GB – Aurora Black (US Warranty) - Was $849.99, now just $399.99
- Buy LG Stylo 5 with Alexa Push-to-Talk – Unlocked – 32 GB – Black (US Warranty) - Was $299.99, now just $159.99
- LG Stylo 5 with Alexa Push-to-Talk – Unlocked – 32 GB – White (US Warranty) - Was $299.99, now just $159.99
Want even more deals? They're all here:
- Black Friday 2019 Deals on microSD Cards, From Just $5.79!
- Black Friday 2019 Discounts the Echo Show 5 to $49.99 [Save $40]
- Amazon Echo Dot (3rd Gen) Heavily Discounted to $22 for Black Friday 2019 [Was $49.99]
- GoPro HERO8 Holiday Bundle $150 Off for Black Friday 2019 [Now $349]
- 32GB iPad 7 Drops to $249 for Black Friday 2019, 128GB Model for $329
- Apple AirPods 2 with Wireless Charging Case are $44 Off Right Now
- Black Friday Deal: Magic Mouse 2 $20 Off, Now Just $59 [Was $79]
- Apple Pencil 1 Discounted to $79 for Black Friday 2019 [Was $100]
- Black Friday Deal Discounts SanDisk and WD Products by up to 60%, Includes microSD, SD Cards, SSDs, More
- Thanksgiving Day Deal Discounts Iron Man Edition Tello Drone to Just $89 [Was $129]
- Amazon Echo Dot + Smart Plug Bundle for Just $26.99 [Was $74.98]
- 11-inch iPad Pro Now $150 Off for Thanksgiving, Starting from $649
- Linksys Velop Tri-Band Mesh WiFi System $120 Off for Black Friday 2019
- Black Friday 2019 Discounts 64GB 11-inch iPad Pro to $674 [$125 Off]
- Black Friday 2019 Deal: Latest MacBook Air for Just $799 with No-Rush Shipping [Was $1100]
- Red Hot Black Friday Deal: 64GB SanDisk Extreme microSD Card for Just $14.48
- Amazon’s $29.99 Fire 7 Tablet Deal for Black Friday 2019 is Crazy Good
- Apple Watch Series 3 Discounted to $169 for Black Friday
- Black Friday 2019 Deal: Ring Video Doorbell for Just $59.99 [Was $99]
- GoPro HERO7 Bundle $135 Off for Black Friday 2019, Includes Extra Battery + microSD Card [Now $299]
- 12.9-inch iPad Pro is up to $120 Off for Black Friday 2019 – Multiple Options Available


Fornax.Net.Index Namespace
The Index namespace.
Classes
| Class | Description | |
|---|---|---|
| Postings |
Postings list representation for fornax.net
|
|
| Term |
A Term represents a word from text. This is the unit of search. It is
composed of two elements, the text of the word, as a string, and the stemmed token which is the term.
|
|
| TermVector |
Represents a positional posting of a term and all its relative position of
occurence.
|
Enumerations
| Enumeration | Description | |
|---|---|---|
| FieldScope |
FieldScope defines a fieldbased query.
Scope to field implementation used here.
Field Scope is an attribute or property of a file that can be extracted or retreived by fornax.net.
|
|
| IndexMode |
Indexing strategy to be used by fornax.
|
|
| RepositoryType |
RepositoryType indicates the type of repository created.
|
|
| Zone |
Zone is an Indexed Searchable FieldScope.
|


Test
Permission requests should be blocked unless you interact with the page within 1000ms.
Button with handler that stops propagation


The Baseline
The fundamental way of how PHPStan handles and accommodates analysis of codebases of varying quality is the concept of [rule levels](/user-guide/rule-levels). It allows developers to start using PHPStan on a project right away, and raise the strictness accompanied by a more confident type-safety as they fix the errors.
The usual workflow when introducing PHPStan to the CI pipeline is to get the number of errors reported on level 0 to zero and merge that into the main branch. When the developers feel like it, they can try raising the level by one, go through the list of errors, fix all of them, and enjoy increased strictness from that point on.
Rule levels are serving us well, but they come with a few caveats:
1. Upgrade to a new and more capable version of PHPStan might represent a substantial amount of work —you need to fix all the new errors to keep the same level of analysis.
2. Developers are missing out on real bugs when they’re running one of the lower levels.
3. Introducing new advanced custom rules also comes with the need to fix all the violations before the ability to use them.
This is where the baseline comes into play.
PHPStan allows you to declare the **currently reported list of errors as "the baseline"** and cause it not being reported in subsequent runs. It allows you to be interested in violations only in new and changed code.
It works best when you want to get rid of a few dozen to a few hundred reported errors that you don’t have time or energy to deal with right now. It’s not the best tool when you have 15,000 errors — you should probably spend more time configuring PHPStan or run it with a lower rule level.
Generating the baseline
--------------
If you want to export the current list of errors and use it as the baseline, run PHPStan with `--generate-baseline` option:
vendor/bin/phpstan analyse --level 7 \
--configuration phpstan.neon \
src/ tests/ --generate-baseline
It generates the list of errors with the number of occurrences per file and saves it as `phpstan-baseline.neon`. You can also specify a different filename after the `--generate-baseline` CLI option.
This is how the baseline file looks like:
parameters:
ignoreErrors:
-
message: "#^Only numeric types are allowed in pre\\-decrement, bool\\|float\\|int\\|string\\|null given\\.$#"
count: 1
path: src/Analyser/Scope.php
-
message: "#^Anonymous function has an unused use \\$container\\.$#"
count: 2
path: src/Command/CommandHelper.php
You should then include this file in the [configuration file](/config-reference):
includes:
- phpstan-baseline.neon
parameters:
# your usual configuration options
Next time you run PHPStan, the errors in the baseline will be skipped in the analysis result. You can manage the baseline manually by editing the file, or generate the whole file again by running PHPStan with `--generate-baseline`.
The use-cases
------------------
Baseline successfully solves all the problems mentioned above.
**Upgrade to new versions of PHPStan immediately**
It’s especially great if you’re on ancient release branches of PHPStan like 0.10.x or even 0.9.x. You might have been postponing the upgrade because you tried it but had been scared away by hundreds of new errors found by PHPStan. But with the baseline, you can take advantage of the new rules immediately. They will be analysing new code you write with a more critical eye, while the issues found in the old code wait silently in the baseline for you to be fixed when you feel like it.
**Run higher rule level even if there are errors**
If you achieved zero errors on level 2, congratulations to you! PHPStan now reports calls to unknown methods on all variables, or validates types in phpDocs, besides dozens of other checks. But it won’t tell you that you’re passing wrong argument types to a method until level 5!
So you’re missing out on real bugs that might get into production.
With the baseline you can for example run PHPStan on level 5, and export all reported errors. The effect is that the new code you write will be checked more strictly — barring any new bugs to get into production.
**Introduce custom rules and hold new code to a higher standard**
One strategy to fight technical debt is to come up with best practices you want to follow and gradually apply them to the codebase and especially to new code you write.
With the baseline, you can enable [phpstan-strict-rules](https://github.com/phpstan/phpstan-strict-rules) or exquisite rules from the [ergebnis/phpstan-rules](https://github.com/ergebnis/phpstan-rules) package and have them applied only to new code. For example, if you choose to never extend any class again (because inheritance is evil and you should only use composition), you can enable this rule but don’t have to deal with all existing classes with parents right away.


|
Layered Systems
Layered Systems use layers to separate different units of functionality. Each layer only communicates with the layer above and the layer below. Each layer uses the layer below to perform its function. Communication happens through predefined, fixed interfaces. A Layer is a design construct. It is implemented by any number of classes or modules that behave like they are all in the same layer. That means that they only communicate with classes in layers immediately above or below their layer and with themselves. Examples
Where does it come from?The first use of layers in software architecture is in The structure of the 'THE'-multiprogramming system by E.W. Dijkstra (1968). When should you use it?The layered system is ideal when your system has different levels of functionality. The function you want your system to perform is actually performed at the lowest level, or layer. But you do not want to call the functions at the lowest level directly all the time, because they are complex to use, they have several different implementations, etc. At the highest level you just want a few simple functions to do the things you want. Let the lower layers sort the rest out. How does it work?Each layer offers its own kind of functionality. Lower layers are usually more domain specific, closer to the machine's hardware. A higher layer uses a its lower layer to perform its function. It requires its lower layer. It is even allowed for a layer to use other layers that are lower or higher than its immediate neighbor, but these should remain exceptions. They are called bridges and should be properly documented. Each layer contains any number of objects. These objects communicate with other objects in the same layer and in the layers above and below. Its possible to define multiple layers at the same level. It implies that objects of these layers do not communicate with eachother. The user calls a function on an object in the upper layer. This object calls functions in the layer below. These functions in turn approach the layer below and the layer above. Etc. Eventually the function is performed and control is returned to the user. All this is usually done sequentially, in the same thread. Problems
Common implementation techniques
Links |


I know JavaScript very well. And CSS and HTML.
I am working for Quantargo as a Web Dev. Front-End but also Back-End AWS stuff.
My pictures on Unsplash are way too popular. They sum up to about 2 Million views.
I work on Flamous Music. Music For Everyone. WIP (Work-In-Progress)
I love design and also Progressive Web Apps (PWAs)
I wrote a little WebExtension (currently Firefox only) that is useful for people who use Trello and has more than 1000 active uesrs - Trello Super Powers


Equivalent to choosing the Height command on the Row submenu of the Format menu. Changes the height of the rows in a reference.
Syntax
ROW.HEIGHT(height_num, reference, standard_height, type_num)
ROW.HEIGHT?(height_num, reference, standard_height, type_num)
Height_num specifies how high you want the rows to be in points. If standard_height is TRUE, height_num is ignored.
Reference specifies the rows for which you want to change the height.
If reference is omitted, the reference is assumed to be the current selection.
If reference is specified, it must be either an external reference to the active worksheet, such as !$2:$4 or !Database, or an R1C1-style reference in the form of text or a name, such as "R1:R3", "R[-4]:R[-2]", or Database.
If reference is a relative R1C1-style reference in the form of text, it is assumed to be relative to the active cell.
Standard_height is a logical value that sets the row height as determined by the font in each row.
If standard_height is TRUE, Microsoft Excel sets the row height to a standard height that may vary from row to row depending on the fonts used in each row, ignoring height_num.
If standard_height is FALSE or omitted, Microsoft Excel sets the row height according to height_num.
Type_num is a number from 1 to 3 corresponding to selecting the Hide, Unhide, or AutoFit commands from the Row submenu.
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Remarks
If any of the argument settings conflict, such as when standard_height is TRUE and type_num is 3, Microsoft Excel uses the type_num argument and ignores any arguments that conflict with type_num.
If you are recording a macro while using a mouse, and you change row heights by dragging the row border, Microsoft Excel records the reference of the rows using R1C1-style references in the form of text. If Uses Relative References is selected, Microsoft Excel uses R1C1-style relative references. If Uses Relative References is not selected, Microsoft Excel uses R1C1-style absolute references.
Related Function
COLUMN.WIDTH Sets the widths of the specified columns
Return to index


Beautiful HD Video Yoga Classes for Everyone
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Please keep the issue tracker limited to bug reports, feature requests and pull requests.
If you have personal support or setup questions the best place to ask those are StackOverflow.
When reporting a bug make sure to include information about which browser and operating system you are on as well as the necessary steps to reproduce the issue. If possible please include a link to a sample presentation where the bug can be tested.
Please do not submit plugins as pull requests. They should be maintained in their own separate repository. More information here: https://github.com/hakimel/reveal.js/wiki/Plugin-Guidelines


I'm Sasongko Jati,
photographer based in Indonesia.
Photography service for both large scale productions and more compact projects.
Services
WHAT WE DO
- Product campaign & social media content.
- Managing photo production from beginning to the end.
- Delivery professional & immediate to you.

- Send your products.
- Let's work together.


[El-Kabong Home]
Main Page Compound List File List Compound Members File Members
ekhtml_string_t Struct Reference
A string object, which is not NUL terminated.
More...
List of all members.
Public Attributes |
|
const char * | str |
| | Actual string data.
|
|
size_t | len |
| | Length of the data in `str`.
|
Detailed Description
A string object, which is not NUL terminated.
For speed reasons, El-Kabong does not deal with zero-terminated strings.
The documentation for this struct was generated from the following file:
Generated on Sun Nov 10 15:54:34 2002 for ekhtml by
1.2.14 written by Dimitri van Heesch,
© 1997-2002


Tip - Following updates on github
03 Sep 2014I will try and post regular tips for working with the publishing ecosystem, iPython etc, as they occur to me.
Today’s is spying on me as I work. The notebooks that make up the Lectures and Assignments are all version controlled on GitHub.
If you want to be updated on when I change any of the webpages by email, you can click on the “View on Github” link:
Now, at this point you likely need a github account, but they are free and painless (up to your ability to memorize passwords). At this point you can click “Watch” and you should get an email when I make a commit.
This could be annoying. I tend to commit changes early and often, but it might help you catch a change I make.


Programmers write code, developers communicate:
with computers,
with users,
with each other.
Here at JankeLearning we believe there are enough programmers in the world, but there can never be enough developers.
Our content is designed to help you make the journey from programmer to developer. We combine the top in pedagogy and development to provide you with the best learning resources we can.
After a year of testing content and teaching methods at Elium Academy and with support from Elewa, we're finally prepared to share what we've learned.
If you're looking to take your programming to the next level or looking to get started the right way, give us a try.
Not sure how to get started? Check it out for yourself!
check it out here
In-person Classes |
Self-study or contributing |
21st Century Education |


Let's STEAM project documentation
Home
Download
Hardware documentation
Hardware Requirements
Welcome to Component Hardware Requirements!


{% extends "base_generic.html" %} {% load crispy_forms_tags %} {% block pagetitle %}Virtual Private Server{% endblock %} {% block content %}
Enter the details for this VPS and how it will be used for the {{ project_name }} project.


1)
The baby was crying because of an ear ache.
Yes
No
2)
Mrs. Jefferson wrote an example on the board.
Yes
No
3)
There is a night market in the city of Taipei.
Yes
No
4)
That taxi driver is a honest man.
Yes
No
5)
David raised his hand to ask a question.
Yes
No
6)
The boy ate an ice-cream on his way back from school.
Yes
No
7)
There was an blue eraser on the table.
Yes
No
8)
A author is a person who writes a book.
Yes
No
9)
The children made a chart on global warming.
Yes
No
10)
Nick dreamt about a unicorn.
Yes
No


Operation Requirements
APPLYING FOR A TEST VEHICLE PERMIT
Agency = WA Department of Licensing/ Department of transportation?
A manufacturer or other entity that wants to test the vehicle on public roadways must submit an application to the Agency which may issue the test vehicle permit. The application must include:
- Statement that each vehicle follows NHTSA Performance guidance and complies with applicable Federal Motor Vehicle Safety Standard.
- Identification of manufacturer or other entity and contact information of the testing program director.
- Vehicles’ identification to be tested on public roadways by VIN, vehicle type, and year, make, and model.
- Identification of the test operators with their driver’s license number, and respective jurisdiction.
- Safety and compliance plan, including self-certification of testing and compliance to NHTSA’s guidance (a copy of the summary Safety Assessment submitted to the NHTSA per the Vehicle Performance Guidance).
- Evidence of insurance, surety bond, or proof of self-insurance for 5 million US dollars.
- Summary of the operators’ training. The Agency will grant testing approval when evidence of insurance, operator training, and self-certification.
ISSUING PERMISSION TO TEST
Agency must involve the Department of Licensing and notify washington state patrol and relevant municipal police forces before granting permission of testing. Permission can be granted with restrictions of testing in certain areas Authorization may be suspended if the tester fails to … (any above requirements) The Agency will issue a letter authorization of testing in the jurisdiction and the State motor vehicle agency a permit for each test vehicle. The vehicle-specific permit must be carried in the test vehicle all the times Vehicle properly registered and titled in accordance to WA laws.
TESTING OPERATION
The vehicle can only be tested by an operator designated by the company. The operator must hold a valid driving license in the US. The operator must have received the proper training to manage the specific test vehicle. The operator must be able to take immediate control of the vehicle, manually or remotely, in case of an emergency or malfunctioning of the vehicle. The operator is responsible for following the traffic rules and of any traffic violation All accidents with test vehicles must be reported in accordance to WA laws.
Penalties
Failure to follow state operating procedures will result in a fine of up to $25,000 for each infraction The state agency is responsible for issuing punishment Repeatedly failing to follow state laws will result in a suspension of testing permit
Deployed Vehicles
Drivers
For SAE Levels 2 and below: The (agency/manufacturer/reseller) shall provide the operator with information about the levels of automation for specific vehicles, if any. The operator shall understand their responsibilities for each level of automation
Licensing
The operator must monitor the operation of the vehicle The operator must be immediately available to perform the driving task when requested or the lower level automated system disengages
For SAE Level 3:
The operator is the individual who engages the autonomous driving capabilities of the vehicle The operator must hold a valid driving license in Washington State The operator shall be trained to safely operate the vehicle in autonomous driving mode The operator is responsible for safe operation of the vehicle The operator is required to follow traffic laws, except the following: The operator does not need to keep their hands on the steering wheel of the vehicle. The operator may use a cellular device as long as they do not undertake action which would restrict their ability to resume control within a reasonable period.
For SAE levels 4 and 5:
The operator is the individual who engages the autonomous driving capabilities of the vehicle The operator does not need to be in the vehicle during operation The operator is responsible for safe operation of the vehicle The vehicle must follow state traffic laws The vehicle must be able to get to a safe location in case of emergency The vehicle must follow all directions given by law enforcement personnel Registration and Titling The vehicle shall be allowed by the state agency to safely operate The vehicle should be registered and the vehicle capabilities should be identified on the registration The registrant shall acknowledge that they understand the operation requirements for the level of automation. The vehicle should have the autonomous capabilities identified on the title When technology that allows a vehicle to be operated without a human driver either at all times or under limited circumstances is installed on a vehicle after the initial purchase, the vehicle shall need to get new registration and a new title The new registration and title shall identify the level of automation according to SAE standards For vehicles SAE levels 3 and above: The vehicle shall have a sticker on the front and rear windshield/bumper that identifies the SAE level of automation
Operation The operator must have insurance for the vehicle The vehicle must be registered with the state before operation The operator is responsible for following the traffic rules and of any traffic violation All accidents with vehicles must be reported in accordance to WA laws. Vehicle data pertaining to the accident must be made available to the state agency (kinda based this on apple’s letter)
Delegation In order to make the transition from human-driven motor vehicles equipped with automated safety technologies to fully automated vehicles, gaps in current regulations should be identified and addressed by the States (with the assistance of NHTSA). Some examples are: • Law enforcement/emergency response • Occupant safety • Motor vehicle insurance • Crash investigations/crash reporting • Liability (tort, criminal, etc.) • Motor vehicle safety inspections • Education and training • Vehicle modifications and maintenance • Environmental impacts [Need to see if we have to delegate all of these or if the rest of the team has dealt already with some of them]
ADMINISTRATIVE ISSUES
Creation of the Committee. The Agency will create and launch the “Committee for Autonomous Technologies Safety and Cybersecurity” (CyberCATS). The Committee will include representatives from the governor’s office, the motor vehicle administration, the State department of transportation, the State law enforcement agency, the State Highway Safety Office, office of information technology, State insurance regulator, the State office(s) representing the aging and disabled communities, toll authorities, and transit authorities. [Need to check with Daniel what the name of these entities in WA are]
Coordination. The Agency will inform the CyberCATS about the requests received to test autonomous vehicles and the status of the Agency’s responses to them.
Better Regulation. The Agency will review main statutes to identify any legal issues that need to be addressed prior to the deployment and operation of automated vehicles. In particular, but not limited to, the Agency will examine the (1) licensing/registration; (2) driver education/training; (3) insurance and liability; (4) enforcement of traffic laws/regulations; and (5) administration of motor vehicle inspections, in order to address unnecessary barriers to safe testing, deployment, and operation of HAVs. [Need to see if we have to delegate all of these or if the rest of the team has dealt already with some of them]
Test Application Procedure. The Agency will define an internal procedure for the application of manufacturers to test autonomous vehicles in the State of Washington.
Test Vehicle Permit Issuance Procedure. The motor vehicle agency will define an internal procedure for issuing test vehicle permits for autonomous vehicles.


SMART Client Example
Fhir Server Base URL:
SMART Dev Sandbox
SMART Dev Open Sandbox
HSPC Sandbox
Custom
Go
The app might fail to launch against a custom Fhir URL if it is not registered on that server. This example is registered in HSPC and the SMART Dev Sandbox accepts any client ID. For other protected servers you might have to modify the source code and specify your correct
clientId
first.


Please expect 24 hours for inquiry response.
Fekkai, Domani Studios
Fekkai is a hair care brand that offers premium products and salon services.
With the introduction of their new luxury hair line, The One, Fekkai recognized the need to reposition their brand and website to target a more affluent customer base. This required a significant shift in their marketing strategy, with an emphasis on luxury and sophistication over casual appeal.
The old website did not accurately convey the brand's high-end image, making it challenging to attract luxury customers. Our challenge was to design a website that not only looked luxurious and modern but also provided a smooth user experience that made it easy for customers to find the products they were looking for.
As Fekkai sought to reposition themselves as a luxury brand, their website had to reflect this new image in every way. This meant prioritizing high-quality brand assets and ensuring that the website design highlighted them effectively.
From the product photography to the website layout, every element had to come together seamlessly to create a truly luxurious online shopping experience for Fekkai's customers.
Throughout the design process, we were mindful of the need to create a scalable, flexible design system that Fekkai could build upon in the future.
By taking a systematic approach to all of the components (i.e. buttons, icons, photography, typography etc.), we were able to create a cohesive design language that could be extended to future pages and products while maintaining the new luxury energy.


Conventional wisdom says any film that spends an inordinantly long amount of time on the shelf between its production and its release must be a piece of junk.
To get an idea of how long ``Nightwatch'' has been on hold, please note the trailer for it was attached first to ``Scream'' in December 1996 and then to ``Scream 2'' last Christmas.
Astonishingly, the movie turns out to be a stylish little horror show that's certainly better than most of its kind.
The film is a remake by Danish director Ole Bornedal of his own ``Nattevagten,'' a sizable hit abroad that has rarely been seen in America. A very boyish-looking Ewan McGregor plays Martin, a law student who takes a job as a night watchman in a decrepit Los Angeles morgue.
Business there is brisk, since a serial killer is butchering prostitutes and taking their eyes as trophies. Inspector Cray (Nick Nol-te) is not-so-hot on the case.
As the bodies pile up, Martin eventually becomes a suspect in the slayings, but more likely culprits include a pill-popping doctor (Brad Dourif), the unbalanced former security guard (Lonny Chapman) and even Martin's misogynistic best friend James (Josh Brolin), a twisted character who delights in manipulating and degrading the opposite sex.
Frankly, women don't fare too well in ``Nightwatch,'' and Bornedal's tendency to linger on images of abuse taints the picture as a whole. A restaurant scene featuring Martin and a down-and-out prostitute engaging in behavior that might make even George Michael blush is intended to be humorous, but comes off as crass exploitation.
The palpable erotic vibe between Martin and James, on the other hand, seems like something Bornedal and co-writer Steven Soderbergh may not have intended: The looks James and Martin exchange are ripe with suggestiveness, and when James pressures Martin into fooling around with a hooker James has already slept with, it feels like a sex-by-proxy situation.
What a decent-enough guy like Martin is doing hanging around with such a cretin is the movie's real mystery, much more difficult to figure out than the identity of the murderer.
Bornedal seems to have been more intrigued by Martin's adjustment to life in the morgue, and the director makes excellent use of the Cinemascope frame and some disturbing sound effects (such as the amplified flapping of moths' wings) to show how our hero is overwhelmed by his cold, spacious workplace.
In addition to creating an often unnerving atmosphere - even in its climax, which turns out to be exciting and absurd at the same time - ``Nightwatch'' is also notable as another one of the charismatic McGregor's quirky performances.
Though he struggles at times to suppress his Scottish accent, McGregor delights in capturing Martin's odd little details, such as the way his nose sweats when he's tense.
Brolin is memorably loathsome but Nolte and Patricia Arquette, as Martin's lover, are greatly underused and photographed so unmercifully they look ready for the morgue themselves.
James Sanford
The review above was posted to the
rec.arts.movies.reviews newsgroup (de.rec.film.kritiken for German reviews).
The Internet Movie Database accepts no responsibility for the contents of the
review and has no editorial control. Unless stated otherwise, the copyright
belongs to the author.
Please direct comments/criticisms of the review to relevant newsgroups.
Broken URLs inthe reviews are the responsibility of the author.
The formatting of the review is likely to differ from the original due
to ASCII to HTML conversion.
Related links: index of all rec.arts.movies.reviews reviews


Add Promos
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Full Days Allocated on Project
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Remaining FTE Days (at total_staff_cost{{project.fte}}%): {{ project.remaining_days_at_fte|dp2 }}
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{% if request.user.is_superuser %}
{% if project.is_service %}
Total Budget Spend
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Project Total Value: £{{ project.total_value|floatformat:2|intcomma }}
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{% endif %}
{% endif %}


Please fill out the following fields appropriately. Check if you have been/are diagnose/are feeling any of the following:
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To hash or not to hash? Was that the question?
For the normals among us out there, the intricacies of programming languages like Ruby are about as inaccessible as ancient Egyptian. But upon closer examination they actually have some straight-forward built in objects that simplify things like processing and storing information. Two such objects are arrays and hashes. An array as you might expect is a list of items that are stored in the memory of a program bracketed with brackets [ ]. It will store any object in Ruby such as numbers, , variables, strings, booleans, even arrays and hashes, all separated by commas. An array that holds one of each of these objects might look something like this:
my_array = [42, variable1, “What’s up?”, true, [“Another”, “array!”], { }]
Arrays are organized in order according to their index, which is to say their position in the array starting with the number 0 instead of 1. So 42 has the index of 0, variable1 has an index of 1 and so on. The utility of an array becomes apparent when you start to get into array methods that are built into the language of Ruby. There are methods that operate on arrays to check each index for something, join strings into sentences, pick specific values etc. This is probably about one percent of possible methods for arrays so they are extremely useful. A hash is a similar object, but they have some differences that make them more appropriate than arrays in certain circumstances. The main difference is that within a hash the information isn’t stored as indices; they are stored as pairs of keys and values, so the info isn’t necessarily accessed in order, it’s accessed according to its key. The other main distinction is in their syntax, hashes are denoted with curly braces:
my_hash = { city: “San Francisco”, state: “California”, country: "USA”, planet: “Earth” }
Keys and values should be one of the objects previously mentioned. In this syntax the keys will auto- matically become another type of Ruby object, a symbol, which means it will be unique to that specific key and not able to be duplicated anywhere else. This syntax is new to Ruby 1.9 and makes key naming a little bit easier than in the past. Hashes have many of the same methods that arrays do, but are more useful in situations where you need data to be specific to a certain key or value.
For instance if I wanted to know what the highest grade on the math test was, I could put all the grades
in an array and use a method to return the highest number in the array. However if I wanted to attach a
student to that highest grade I would want to put all the students with their grades as key-value pairs in a
hash, and use a method to return the student that earned the highest grade. There are endless possibilities,
but the moral of the story is arrays are easier to work with and process, whereas hashes are more versatile.
Thanks for reading and I hope while doing so you learned something about arrays and hashes , I sure did
while writing it!


Called to process data that was returned from the server.
requestComplete(status, cmd, [callBack])
| status |
string, status of the request |
| cmd |
string, name of the command |
| callBack |
function, optional call back function |
Returns undefined.
Description
This method is called when server request returns. First parameters is the status of the request. If
status = 'error' it indicated that request came back with an error. This method will merge returned
data to the grid. It uses internal variable w2gird.request_xhr.responseText as the text returned from
the server.
This method emits onLoad event.


See: Description
| Interface | Description |
|---|---|
| PgBatch |
A batch execution.
|
| PgClient |
The entry point for interacting with a Postgres database.
|
| PgConnection |
A connection to Postgres.
|
| PgConnectionPool |
A pool of connection.
|
| PgPreparedStatement |
A postgres prepared statement.
|
| PgQuery |
The binding of a
PgPreparedStatement and a set of parameters that can be executed once. |
| Class | Description |
|---|---|
| PgClientOptions | |
| PgClientOptionsConverter |
Converter for
PgClientOptions . |
| PgPoolOptions |
The options for configuring a connection pool.
|
| PgPoolOptionsConverter |
Converter for
PgPoolOptions . |
| Enum | Description |
|---|---|
| PoolingMode |
| Exception | Description |
|---|---|
| PgException |
examples.Examples#ex1
----
You can create a pool of connection to obtain a connection instead:
[source,$lang]
----
examples.Examples#ex2
----
When you are done with the pool, you should close it:
[source,$lang]
----
examples.Examples#ex3
----
== Prepared statements
Prepared statements can be created and managed by the application.
The `sql` string can refer to parameters by position, using $1, $2, etc...
[source,$lang]
----
examples.Examples#ex4
----
When you are done with the prepared statement, you should close it:
[source,$lang]
----
examples.Examples#ex5
----
NOTE: when you close the connection, you don't need to close its prepared statements
By default the query will fetch all results, you can override this and define a maximum fetch size.
[source,$lang]
----
examples.Examples#ex6
----
When a query is not completed you can call PgQuery.close()
to release
the query result in progress:
[source,$lang]
----
examples.Examples#ex7
----
Prepared statements can also be used to batch operations in a very efficient manner:
[source,$lang]
----
examples.Examples#ex8
----Copyright © 2017. All rights reserved.


A SPIE chart superimposes a normal pie chart with a modified polar area chart to permit the comparison of a set of data at two different states. This chart type is relatively new, pioneered by Dror G. Feitelson in 2003. You can read his original research paper here.
Currently Firefox 4+, Chrome 11+, and Safari 5+ have been tested and verified working. IE 7, 8, and 9 have some issues with the current implementation.
Each segment is defined in decimal percentage form. For a SPIE chart split in half, with each half 70% full you would define 2 segments; Each with a value of 0.5, and a fill of 0.70. All available options are described by Example 1 below.
showSpieChart({ radius : 100, id: "example1", animate: true, animation: "elastic", speed: 200, hex: "#52718c", hexfill: "#b1cce3", stroke: "white", segments : [ {value : 0.396226415094, fill : 0.12}, {value : 0.235849056604, fill : 0.92}, {value : 0.202830188679, fill : 0.56}, {value : 0.165094339623, fill : 1.2}, ], });
showSpieChart({ radius : 50, id: "example2", hex: "#E8DDCB", hexfill: "#036564", stroke: "#CDB380", segments : [ {value : 0.214285714286, fill : 0.73}, {value : 0.285714285714, fill : 0.3}, {value : 0.357142857143, fill : 0.52}, {value : 0.142857142857, fill : 0.8}, ], });


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Schtromm.github.io
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Money Play. How should Red play 42?
pips Red=62 White=106
(CorrectAnswer= 0/0, ErrorScore= 0)
It is rarely right to “pay now” against a five-point board because there is virtually no life after death.
This position is no exception and 5/1, 3/1 is the right play. Any other play is an error.
Interestingly at a score of 1-5 to 7, 8/6, 8/4 ties with 5/1, 3/1 because gammon losses are irrelevant and gammon wins are important. 8/6, 8/4 wins more gammons because it achieves a quicker bear-off, assuming of course that the blot isn’t hit.
This position is no exception and 5/1, 3/1 is the right play. Any other play is an error.
Interestingly at a score of 1-5 to 7, 8/6, 8/4 ties with 5/1, 3/1 because gammon losses are irrelevant and gammon wins are important. 8/6, 8/4 wins more gammons because it achieves a quicker bear-off, assuming of course that the blot isn’t hit.
1. Cubeful 2-ply 8/6 8/4 Eq.: +0.197 0.637 0.053 0.001 - 0.363 0.024 0.001 2. Cubeful 2-ply 5/1 3/1 Eq.: +0.176 (-0.021) 0.643 0.034 0.001 - 0.357 0.023 0.000 3. Cubeful 2-ply 8/4 6/4 Eq.: +0.125 (-0.073) 0.612 0.057 0.001 - 0.388 0.026 0.001 4. Cubeful 0-ply 8/6 5/1 Eq.: -0.183 (-0.380) 0.496 0.039 0.001 - 0.504 0.042 0.001 5. Cubeful 0-ply 6/4 5/1 Eq.: -0.234 (-0.432) 0.486 0.036 0.001 - 0.514 0.068 0.001


The perl object layer on a relational dbms is intended to simplify database interactivity and manage relationships and submits. The query capability is currently very limited. Functionality includes:
Methods by functional groups: (the most useful methods are indicated in red ). Most of the others are convenience methods or could be considered private methods of the objects.
DbiDatabase login/logou
t: Used to create database login which allows all subsequent functionality.
Constructor
Getting and Setting attribute values
Retrieving objects from the database
Managing object cache
Setting default values
Increasing the maximum number of objects allowed
in RAM
Setting global NO version
Instance level management of versioning and
updating:
Checking read and write permissions
Managing global behavior of objects
Managing memory (undefPointerCache!)
Managing valid parents/children
Managing Children
Managing Parents
Managing submits to database:
Managing deletes
Evidence
Similarity facts for storing sequence similarities
Methods for dealing with sequence
Printing
Parsing XML into objects
Comparing attribute values
Retrieving table ids and primary key attributes given
name
General methods for dealing with facts
Miscellaneous method
Special objects (hand coded so have extra functionality).
DbiDatabase Methods: Establish logins, retrieve meta information:
DbiDatabase is the module that is used to create logins to the database and from which all the other objects are generated. Thus, to start a session, you simply create a new DbiDatabase and you are then able to use all the objects representing specific tables in that database. DbiDatabase also has methods for getting meta information relevant to that database (such as getTables()) in addition to getTable(tableName) which returns a DbiTable for tableName. This enables users to access meta information for this specific table such as foreign key relationships, primary key attributes, etc. These methods, however, will in most cases be unecessary as the Table specific objects take care of all this for the user.
DbiDatabase->new( DBI_DSN, login, password,
verbose, noInsert, default, dbName)
This creates a DbiDatabase that allows the use of all
the following methods on specific objects. DBI_DSN is optional if you
have your environment variable of this same name set. login, password,
and dbname are required where dbname is case sensitive such as "GUSdev".
Verbose if true prints all SQL statements executed and noInsert if true does
not commit to the database although all sql is executed and then rolled back.
The objects manage these attributes of the Database with setVerboseOn() and
setCommitOff() (see below
).
DbiDatabase->logout()
Ends this session and disconnects all the handles generated.
Additional methods are available if needed to retrieve meta information from the database such as a listing of all the tables/views etc.
TableName->new($dbiTableHashRef, $primary_key_list,
$dbhandle)
This will create an object for TableName. All aguments
are optional. I normally only pass in the hash reference of attribute
values if I want to set some values this way. The primary key list
is only necessary if the table does not have a primary key defined (which
all GUS objects do) and dbhandle only if you are using a database that is
different than that logged into with the DbiDatabase constructor which establishes
the necessary database handles for the objects to interact with the database.
Getting and Setting attribute values:
Attribute values can be set in two ways. The first is by passing in
a hash ref of attribute => value pairs to the constructor. The second
is via set methods in each object of the form:
setRowUserId($userId); for the attribute "row_user_id".
Alternatively, one can use the set method in the super class directly. NOTE: this is in general not a good idea as this bypasses any specific functionality that may be associated with the set method of the specific objects. For instance, the setSequence method of the sequence objects removes returns, uppercases all characters and sets the length attribute so there is a consistent representation in the db.
set('row_user_id',$userId);
Get methods follow this same syntax except do not take in the value but rather return it.
getRowUserId()
get('row_user_id')
Getting substrings from CLOB attribute types. This is particularly useful if one hasn't retrieved the CLOB attribute (see below) to save retrieving a very long sequence, for example, into memory. The method is a generic one to allow retrieving substrings from any CLOB attribute:
getSubstrFromClob($attribute,$start,$length)
Note that the start here is indexed from 1. To
retrieve a sequence substring from a sequence object one would use
$sequence->getSubstrFromClob('sequence',2334,1000)
#would retrieve 1000 characters from the sequence
attribute starting at position 2334.
Retrieving objects from the database:
Enough attributes must be set to ensure a single row is retrieved.
retrieveFromDB(\@attributesToNotRetrieve,$replaceCache)
returns 1 if successful and populates the objects attribute
values from the database. If unsuccessful returns 0 and leaves object
unaffected. If multiple rows are returned then is considered unsuccessful.
The query to the database simply constrains all the attributes that have
been set. One can choose to NOT retrieve specific attributes by passing
in an array reference of attribute names that should not be retrieved.
This can be extremely useful for objects that have very large atts
such as sequence if one only wants other attributes or just a substring from
the sequence (see previous command).
Managing Object Database Cache:
Objects are cached when retrieved from the database either with retrieveFromDB
or getParent/Children methods. In the case of getParent/Children, if
an object is requested that is already in the cache, the object in the cache
is returned/added so that only a single object representing the tuple is
present at any given time. RetrieveFromDB always retrieves the object
from the database even if there is already a copy in the cache and replaces
the current cached copy if the optional $replaceCache variable is used.
Users should check the cache to see if an object already exists before retrieving
from the db if there is a chance that they are constructing duplicate objects.
NOTE: the key of the cache is a concatenated string of the primary
key values. This is generated by the method getConcatPrimKey().
In most cases (when there is a single primary key attribute) this will be
just the value of the identifier returned by getId().
addToDbCache($o,$replace)
adds objects to cache...this is done automatically when
objects are retrieved from the database so shouldn't be called by users.
getFromDbCache($class,$key)
returns the object if it exists else undef.
isInDbCache($class,$key)
returns 1 if in the cache and undef otherwise.
Note for testing purposes this is very similar to getFromDbCache.
removeFromDbCache($object)
removes the object ($object) from the dbCache.
Setting default values:
These methods are used for setting default values which all subsequent objects
created in the application will inherit. On submit these values will be set
automatically.
setDefaultProjectId($project_id) (default = 0 (GUS))
getDefaultProjectId()
setDefaultUserId($id)
getDefaultUserId()
setDefaultGroupId($id) (default = CBIL)
getDefaultGroupId()
setDefaultAlgoInvoId($id)
getDefaultAlgoInvoId()
setDefaultUserRead($read) (default = 1)
getDefaultUserRead()
setDefaultUserWrite($val) (default = 1)
getDefaultUserWrite()
setDefaultGroupRead($val) (default = 1)
getDefaultGroupRead()
setDefaultGroupWrite($val) (default = 1)
getDefaultGroupWrite()
setDefaultOtherRead($val) (default = 1)
getDefaultOtherRead()
setDefaultOtherWrite($val) (default = 0)
getDefaultOtherWrite()
Increasing the maximum number of objects allowed in RAM
at one time (default is 10000):
This method is necessary to prevent memory leaks due to forgetting to call
undefPointerCache() in each loop to release objects for garbage collection.
Unless the user needs more than 10000 objects at one time (which seems very
unlikely) then these methods should be uneccessary.
setMaximumNumberOfObjects($num)
getMaximumNumberOfObjects()
Setting global NO version (default = 0):
While this functionality defies the initial design of GUS, it is needed for
dealing with things like draft sequence where one wants to simply wipe the
database of the current version and replace it with something new. No
objects are versioned.
setGlobalNoVersion($val)
getGlobalNoVersion()
Instance level management of versioning and updating:
Indvidual objects can be specified to be not versioned or not updateable.
Default is to version and allow updates for all objects.
setVersionable($v) (default = 1)
isVersionable()
setUpdateable($u) (default = 1)
isUpdateable()
Checking read and write permissions:
Methods to check the read/write permissions based on the default group and
user. Enforced when retrieving from database or retrieving children
or parents.
checkReadPermission()
checkWritePermission()
Managing global behavior of objects (commit, verbose,
debug):
These parameters (once set) take affect on all objects. Defaults:
commit = on, verbose = off, debug = off.
setDebuggingOn()
Reports debug statements for methods in RelationalRow.
setDebuggingOff()
getDebuggingState()
setVerboseOn()
Turns on printing to stdout all SQL statements.
setVerboseOff()
getVerboseState()
setCommitOff()
All submits will be rolled back rather than committed.
Should not be turned off except for testing on a few loops.
setCommitOn()
getCommitState()
Managing memory (allowing garbage collection of objects
that are out of scope):
Necessary because of perls lack of a garbage collector that can deal with
circular references. Only method really necessary as all others are
automatically taken care of is undefPointerCache() which must be called in
each loop. Note that this removes all objects from the pointer cache so all
parent/child relationships are lost and must be re-established if needed.
removeAllChildPointers($recursive)
If $recursive = 1 then will call method on all children
recursively.
addToPointerCache($ob)
Add objects to the pointer cache....done automatically
when objects are created rarely if ever needs to be called.
getFromPointerCache($object_reference)
Method to retrieve the object from the pointer cache.
removeFromPointerCache($ob)
Removes single object from the cache.
undefPointerCache()
MUST
be called in each loop to allow garbage collection. Removes all child
and parent pointers so they can not be retrieved.
Managing valid parents/children (code generator takes
care of this).
The objects keep a list of valid parents and children. Assuming the
code generator is working correctly, these methods should not need to be
used.
setChildList(@list)
@list is an array of array references [ChildTableName,My_primary_key,Childs_foreign_key_to_me]
addToChildList(@list)
getChildList()
isValidChild($c)
isOnChildList($className)
getChildSelfColumn($className)
getChildColumn($className)
setParentList(@list)
addToParentList(@list)
getParentList()
getParentSelfColumn($className)
getParentColumn($className)
isValidParent($p)
isOnParentList($className)
set255ChildList(@list)
addTo255ChildList(@list)
get255ChildList()
get255ChildListPkAtt($className)
get255ChildListOrderAtt($className)
get255ChildListStringAtt($className)
isValid255ChildName($className)
Managing Children (objects with my primary key as a foreign
key):
Methods for managing children including retrieving from the database, getting
(returning children) marking children deleted and submitting. NOTE
that submitting children is automatically done whenever an object is submitted
and should be unecessary (in fact the methods for managing the transaction
may NOT work appropriately if one submits children manually). Submitting
self results in submitting self and then all children within a single
transaction.
getChildren or retrieveChildrenFromDB with one of the ImpClasses will bring back the appropriate subclass children/parent of that ImpClass. For example: getChildren('NAFeatureImp',1) will get any of the NAFeature subclass children such as RNAFeature, GeneFeature, ExonFeature etc. In this way, one can retrieve all the features associated with a given NASequence entry.
getChildren($className, $retrieveIfNoChildren, $getDeletedToo,
$where,\@doNotRetrieveAttributes)
Returns an array of children in classname. If $retrieveIfNoChildren
= 1 then does a retrieveFromDB if there are currently no children of this
className. If $getDeletedToo = 1 then will also return children that
have been marked deleted. $where is a hash ref where children returned
must meet all the attribute (key) => value (value) pairs in the hashref.
If the $className is one of the "Imp" tables such as NASequenceImp, then
the subclass objects of the correct type are returned....ie ExternalNASequence,
Assembly as appropriate. The last argument is an array reference of
attbibutes that should not be retrieved should these children need to be
retrieved from the DB...ie $retrieveIfNoChildren = 1.
getAllChildren($retrieve, $getDeletedToo, $where)
Returns all children.
getChild($className, $retIfNochildren, $getDeletedToo)
Returns one child (NOTE: only useful if you know
there is only one child as returns the first one on the list if more than
one).
setChild($c)
Replaces children in this childs class with this
child. Should use addChild for adding
children.
retrieveChildrenFromDB($className, $resetIfHave,
$where,\@doNotRetrieveAttributes
)
Retrieves children in $className from the database.
If $resetIfHave = 1 will reset any children that you already have to the values
from the database. NOTE that any relationships established on the children
that are reset will be lost. $where hash ref as for getChildren().
Note that using getChildren($className,1) will call retrieveChildrenFromDB
if they have not already been retrieved and so save a step.
resetChildrenToDB($className, $where)
Removes all the children with this className and retrieves
them fresh from the db.
retrieveAllChildrenFromDB($recursive, $resetIfHave)
Retrieves all this objects children. If $recursive
= 1 will do this recursively. NOTE that this has the potential for retrieving
a huge number of objects if called from something like Group. $resetIfHave
resets children you already have to the database.
resetAllChildrenToDB()
Retrieves all children following removal of all existing
ones.
addChild($c, $resetIfHave)
Method of choice for adding a child.
addChildren(@children)
Adds an array of children.
removeChild($c)
Remove child from self. NOTE that this has NO impact
on the database....simply removes pointer between parent and child.
removeChildren(@ch)
removeChildrenInClass($className)
removeAllChildren()
Managing Parents:
Similar to managing children. Difference is that can only have one
parent of each type.
setParent($p)
Sets this object as my parent. The parent likewise
points to me as its child. Thus calling $p->addChild($self) is equivalent
to $self->setParent($p)
getParent($className, $retrieveIfNoParent
,\@doNotRetrieveAttributes)
if $retrieveIfNoParent = 1 then calls retrieveParentFromDB
if does not have that parent. If the $className is one of the "Imp"
tables such as NASequenceImp, then the subclass objects of the correct type
are returned....ie ExternalNASequence, Assembly as appropriate.
getAllParents($retrieveIfNoParent,\@doNotRetrieveAttributes )
retrieveParentFromDB($className ,\@doNotRetrieveAttributes)
retrieveAllParentsFromDB()
setParentId($p)
Sets my foreign key to be the Id of this parent.
Note that this occurs automatically upon submit to the database.
removeParent($p)
removeAllParents()
Managing submits to database:
Principal here is that the top level object (an object with only children)
should be submitted. That object following submitting itself, will submit
all its children recursively. Simple many-to-many relationships are
traversed in order to set the foreign keys of the relation, however, the
parent on the far side of the relation will not submit any of its children.
All objects submitting with a single submit command are submitted in a single
transaction so that if something fails, all are rolled back together to mantain
database integrity. All tuples that are updated are versioned by default
and sequences are stored (and versioned) appropriately. Evidence
and Similarity facts are also submitted if they have been set (added).
Upon delete, all Evidence and Similarity tuples that relate to the object
are also deleted (and versioned of course!). Additionally, objects
can store other objects to be submitted after they have submitted themselves
and all their children via the method addToSubmitList($object).
Note that submit and perhaps manage transaction are the only methods in this group that need to be called by user. The others are automatically taken care of appropriately.
submit($notDeep, $noTran)
Automatically submits inside a transaction. $notDeep
= 1 only submits self but not children. $noTran = 1 does not begin
or (when finished) commit a transaction. Used by all children so are
submitted in the initial objects transcation.
manageTransaction($noTran, $task)
This is dealt with automatically, However, if one wants
to submit several top level objects in a single transaction, you can use
manageTransaction to start and then commit a transaction and submit with
noTran the objects in between. $task is either 'commit' or 'begin'.
addToSubmitList($object)
Add $object to a submit list so that it gets submitted
after I submit myself and all children (in the same transaction). This
is the best way to submit objects on far side of a many-to-many relation
that have children and thus need to be submitted explicitly.
setRollBack($rb)
This can be used during an update/submit to force a roll
back at end of submit if errors are detected.
submitEvidence($e, $notDeep, $noTran)
submitAllEvidence($notDeep, $noTran)
deleteAllEvidence($notDeep, $noTran)
submitSimilarityFact($fact, $notDeep, $noTran)
submitAllSimilarityFacts($notDeep, $noTran)
deleteSimilarityFact($f, $notDeep, $noTran)
deleteAllSimilarityFacts($notDeep, $noTran)
All similarity facts of an object are deleted upon submit
if that object has been marked deleted.
submitAllChildren()
submitChildren()
submitChildrenInClass($className)
setAllForeignKeys()
allNonNullsSet()
version()
getVersionTableName()
getRollBack()
setDefaultAttributes()
Sets all the attributes for which defaults have been set.
Managing deletes:
Deletes occur in two phases. Objects must first be marked for deletion
at wich time they can only be retrieved (with getChildren) if one adds in
the bit to getDeletedToo. Objects are deleted from the database (and
versioned) when submitted. Note that in order to delete a tuple, all
it's foreign key relations (children) must also be marked deleted.
The retrieveAllChildrenFromDB(1) and markDeleted(1) are recursive to facillitate
this process.
markDeleted($doChildren)
Mark self deleted. It $doChildren = 1 then does
this recursively.
isMarkedDeleted()
Returns 1 if object is marked deleted.
markUnDeleted()
markChildDeleted($c)
Mark this child deleted so will be removed from the database
on submit.
markChildrenInClassDeleted($className)
Mark all children in this class deleted.
markChildrenDeleted(@ch)
Mark each of these children deleted.
markAllChildrenDeleted($recursive)
Mark all the children I have deleted....recursively if
$recursive = 1.
markChildUnDeleted($c)
Undelete child previously marked deleted.
markChildrenInClassUnDeleted($className)
markChildrenUnDeleted(@ch)
markAllChildrenUnDeleted()
Evidence:
Methods that allow setting and retrieving Evidence. Evidence gets submitting
automatically by "target" object.
addEvidence($fact, $evidence_group_id, $attribute_name)
$fact is a fact object. Can optionally pass in an
evidence group id to group relevant evidence such as for a gene model one
might group the evidence for all the exons. Also optional is the attribute_name
if the evidence is for a particular attribute of the target table such as
"name" or "description".
getEvidence($factTableName, $retrieveUnlessHave)
This method returns an array of Evidence objects.
One can retrieve the fact associated with each with EvidenceObj->getEvidenceFact(1);
note that the optional argument
1 causes the fact object to be retrieved from the database if this has not
already been done.
getEvidenceByGroupId($factTableName, $retrieveUnlessHave)
method untested.
retrieveEvidenceFromDB($factTableName, $resetIfHave)
retrieveAllEvidenceFromDB($resetIfHave, $targetOrFact)
Retrieves all the evidence for this object. It $targetOrFact
then will retrieve whether this object is the target table or fact table.
Default behaviour is to only retrieve evidence if target table. Use
getEvidence then to return an array of evidence ojbects.
retrieveEvidenceFactsFromDB($evidence, $resetIfHave)
getAllEvidence()
Similarity facts for storing sequence similarities:
Methods for dealing with Similarity facts generated by blast and perhaps other
sequence similarity algorithms.
addSimilarityFact($fact, $resetIfHave)
getSimilarityFacts($getIfDontHave)
retrieveSimilarityFactsFromDB($subjectTableName, $getEitherWay, $resetIfHave)
Methods for dealing with sequence:
Get, set, and format sequence.
getSequence()
Returns the sequence as single string.
setSequence($sequence)
Takes sequence string, cleans it up a bit (removes returns and non-sequence
characters) and then sets.
getFeatureSequence()
All features support this method which retrieves the sequence
corresponding to that feature. Basically retrieves a substring from
the sequence to which the feature points corresponding to the span of the
feature on the sequence. RNAFeature generates the sequence from the
exons which make it up if it is predicted unless the actual sequence is stored
in SplicedNASequence. NOTE that this method retrieves the sequence
object to which it points without retrieving the sequence attribute. getSubstrFromClob
is then used to extract the relevant substring, thus saving much memory in
the case of very long sequences.
toFasta($type)
Returns fasta formatted sequence. If $type = 1 the id used is the na_sequence_id
(or aa_sequence_id) otherwise it is the source_id.
Printing: (returns a string that can be printed)
Facility for printing to a string format or to XML.
toString()
Returns in a simple string format the table object (does
not indicate parent or child relationshps).
toXML($indent, $suppressDef, $doXmlIds, $family)
If $suppressDef = 1 then the default attributes below modification_date
are suppressed. $doXmlIds = 1 will print XML ids in the object tags.
$family = 1 will print parent/child relationships in object tags rather than
nesting children (I think?).
parseXML($xml)
Objects parse the xml themselves... $xml is an array reference
where each line of the XML is an element.
processXmlAttributes($xml_atts)
getNextXmlId()
getXmlId()
setXmlId($id)
getObjectFromXmlId($xml_id)
Comparing attribute values:
An object can do simple checks given a hash reference (attributename =>
value) to see if all the values match ones in the object. Likewise,
an object can take in an object with the same (or a subset of) atributes set
and test for equivalence.
compareValues($v1, $v2, $type)
testAttributeValues($href)
Test to see if all attribute => value pairs of the hash
reference match my values.
testObjectAttributeValues($ob)
Self test to see if all attributes of $ob match values
of self. Returns 1 if successful.
getAttributeDifferences($ob)
For comparing two objects...pass in the smaller object
and $self will compare all attributes to see if values are same.
Returns an array of attribute names that are different.
Retrieving table ids and primary key attributes given
name:
For getting the ids and table names from the Evidence and Similarity (mongo
many to many) tables.
getTableNameHash()
getTableNameFromTableId($table_id)
Returns the table name for $table_id.
getTableIdFromTableName($tableName)
Returns the table_id for $tableName.
getTablePKFromTableId($table_id)
Returns the primary key attribute for $table_id.
General methods for dealing with facts:
Have NOT been tested and likely do not work...debug if you want to use!!
getFacts($factTableName)
getAllFacts()
addFact($fact)
submitFact($fact, $notDeep, $noTran)
submitAllFacts($notDeep, $noTran)
getClassName()
Returns class name (table name) of self.
getConcatPrimKey()
returns the values of the primary key attributes concatentated
into a string. Used by the dbCache as not all objects have a single
attribute primary key.
haveAllPrimaryKeyValues()
isValidAttribute($att)
Returns 1 if $att is a valid attribute of self.
getDatabase()
returns the DbiDatabase object from which one can get
the extent and instance handles (and thus do queries) with the methods:
getDbHandle() ##handle all objects
use to interact with the DB.
getMetaDbHandle() ##handle that
retrieve meta information from DB.
getQueryHandle($autocommit)
Returns a Dbi database handle that does not interfere with
the objects as may be the case with the above methods. If $autocommit
is true, then the handle autocommits on submit to the db. You always
get the same handle as it is cached so if you need yet another handle you
can get it from DbiDatabase with:
getDatabase()->makeNewHandle($autocommit)
getTotalUpdates()
returns the total number of rows updated in this session.
getTotalInserts()
returns the total number of rows inserted in this session.
getTotalDeletes()
returns the total number of rows deleted in this session.
Hand coded objects with extra functionality...only a few are mentioned..
A number of the objects for GUS have been handcoded to have extra functionality. A couple of these have been mentioned earlier. For example, sequence objects (and all subclasses) have setSequence methods that clean up the sequence on submit. Also, all Feature objects have getFeatureSequence() methods.
NASequence and all subclasses:
setSequence($sequenceString)
cleans up the sequence a bit before setting.
toFasta($type)
returns the sequence in fasta format. It $type ==
1, uses the source_id for the primary identifier, otherwise uses the na_sequence_id.
toCAML()
returns the sequence entry in CAML format (from Paracel
as input into CAP4).
(NA|AA)Feature and all subclasses:
getFeatureSequence()
returns the sequence for the feature.
getFeatureLocation()
gets the location of this feature as an array (startLocation,
endLocation, is_reversed)
Assembly and AssemblySequence
These objects have many methods for manipulating assemblies and AssemblySequences from parsing cap2/cap4 output to reverseComplementing and generating cap2 alignments. Also has methods for computing/retrieving from the database putative SNPs. Only a few will be indicated here...users should look at the object (Objects/GUSdev/hand_edited/Assembly.pm) for more complete info.
Assembly->getCap2Alignment($idType,$suppressNumbers,$print)
returns a cap2 format alignment for the assembly object.
$idType if true uses source_ids for the assembly sequences rather than
assembly_sequence_ids. if $suppressNumbers, does not print the locations
on the right margin. If $print, prints to STDOUT the alignment as it
is being generated....useful for very large assemblies as it starts
printing very quickly.
Assembly->getRNA($retrieve,$getDeletedToo)
returns the RNA associated
with this assembly.
Assembly->ge
tTranslatedAASequences($retrieve,$getDeletedToo)
returns an array of TranslatedAASequences
Similarity:
setPValue($pValue)
sets the pvalue given the actual pvalue (separates it
into pvalue_mant and exp.
getPValue()
returns the actual P Value
generateSimilarityAlignment($type)
returns an alignment for each HSP (SimilaritySpan)
generated using $type algorithm where the algorithm is ([blast]|fasta|sim4)
with blast being the default.
Last updated: Wed Oct 24 15:19:58 EDT 2001