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This component is intended to be used as a bridge between library and forms to select images.
chocolate-cake-thumb.jpg
marble-cake.jpg
fruitcake.jpg
fat-rascal.jpg
streuselkuchen-thumb.jpg
cremeschnitte-thumb.jpg


A high-level plotting system, built using 'grid' graphics, that is
optimized for speed and modularity. This has great utility for quick
visualizations when testing code, with the key benefit that visualizations
are updated independently of one another.
| Version: |
0.1.6 |
| Depends: |
R (≥ 3.3.0) |
| Imports: |
backports, data.table (≥ 1.10.4), fpCompare, ggplot2, grDevices, grid, gridBase, igraph, methods, raster, RColorBrewer, rgdal, rgeos, sp, stats |
| Suggests: |
covr, fastshp, hunspell, knitr, rmarkdown, testthat (≥
1.0.2) |
| Published: |
2018-11-09 |
| Author: |
Eliot J B McIntire [aut, cre],
Alex M Chubaty [aut],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph] |
| Maintainer: |
Eliot J B McIntire <eliot.mcintire at canada.ca> |
| BugReports: |
https://github.com/PredictiveEcology/quickPlot/issues |
| License: |
GPL-3 |
| URL: |
http://quickplot.predictiveecology.org,
https://github.com/PredictiveEcology/quickPlot |
| NeedsCompilation: |
no |
| Language: |
en-CA |
| Materials: |
README NEWS |
| CRAN checks: |
quickPlot results |


| complete {tidyr} | R Documentation |
Turns implicit missing values into explicit missing values.
This is a wrapper around expand()
,
dplyr::left_join()
and replace_na()
that's
useful for completing missing combinations of data.
complete(data, ..., fill = list())
data |
A data frame. |
... |
Specification of columns to expand. Columns can be atomic vectors or lists.
When used with factors, When used with continuous variables, you may need to fill in values
that do not appear in the data: to do so use expressions like
|
fill |
A named list that for each variable supplies a single value to
use instead of |
If you supply fill
, these values will also replace existing
explicit missing values in the data set.
library(dplyr, warn.conflicts = FALSE) df <- tibble( group = c(1:2, 1), item_id = c(1:2, 2), item_name = c("a", "b", "b"), value1 = 1:3, value2 = 4:6 ) df %>% complete(group, nesting(item_id, item_name)) # You can also choose to fill in missing values df %>% complete(group, nesting(item_id, item_name), fill = list(value1 = 0))


Dependencies
Note: nmod, neg, and punct appear in two places.
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acl
: clausal modifier of noun
acl
marks finite and non-finite clauses that modify a noun except for relative clauses which get the relation acl:relcl.
Haben Sie den Eindruck , daß das Licht heller geworden ist ? \n Do you have the impression that the light got brighter ?
acl(Eindruck, geworden)
Tatsächlich gibt es Bestrebungen , den Straßenverkehr sicherer zu machen . \n There are indeed efforts to make the traffic safer .
acl(Bestrebungen, machen)
acl:relcl
: relative clause modifier
A relative clause is a clause that modifies a noun. Relative clauses
are finite and are introduced with a relative pronoun that refers back to the noun.
acl:relcl
is a subtype of the acl relation.
Er legt das Buch auf den Tisch , der dort drüben steht . \n Put the book on the table that stands over there .
acl:relcl(Tisch, steht)
nsubj(steht, der)
Er stellt den Teller auf den Tisch , auf dem schon das Buch liegt . \n Put the plate on the table on which the book lies already .
acl:relcl(Tisch, liegt)
nmod(liegt, dem)
Extraposed relative clauses often introduce non-projective structures.
Petra hat diese Frau angerufen , die er gestern getroffen hat . \n Petra called this woman who she met yesterday .
acl:relcl(Frau, getroffen)
dobj(angerufen, Frau)
aux(angerufen, hat)
nsubj(getroffen, die)
advcl
: adverbial clause modifier
This document is a placeholder for the language-specific documentation
for advcl
.
advmod
: adverbial modifier
This document is a placeholder for the language-specific documentation
for advmod
.
amod
: adjectival modifier
amod
marks adjectival modifiers that modify the meaning of a noun.
Er ißt rohes Fleisch . \n He eats raw meat .
amod(Fleisch, rohes)
die Rheintaler Bauern \n the farmers from the Rhine valley
amod(Bauern, Rheintaler)
appos
: appositional modifier
appos
marks nominal appositions to noun phrases. This includes parenthesized noun phrases and abbreviations that specify the modified noun.
Die neue Senatorin für Stadtentwicklung , Traute Müller , tritt heute ihren Dienst an . \n The new senator for city development , Traute Müller , assumes her office today .
appos(Senatorin, Traute)
name(Traute, Müller)
das Niedersächsische Landeskriminalamt ( LKA ) \n the Lower-Saxonian state police office ( LKA )
appos(Landeskriminalamt, LKA)
aux
: auxiliary
This document is a placeholder for the language-specific documentation
for aux
.
auxpass
: passive auxiliary
This document is a placeholder for the language-specific documentation
for auxpass
.
case
: case marking
case
marks mostly prepositions in prepositional phrases. Prepositions are considered dependents of the noun whose case value they govern. The case
relation aims at providing a uniform analysis of prepositions and case in morphologically rich languages.
Sie stehen an der Straße . \n They stand on the street .
case(Straße, an)
Sie warten auf den Bus . \n They wait for the bus .
case(Bus, auf)
case
is also used to mark the comparative marker in comparative constructions that involve noun phrases, prepositional phrases, or adjectives.
Der Bus ist schneller als die Straßenbahn . \n The bus is faster than the tram .
case(Straßenbahn, als)
Das sieht alles andere als einfach aus . \n This looks anything but simple .
case(einfach, als)
cc
: coordinating conjunction
This document is a placeholder for the language-specific documentation
for cc
.
ccomp
: clausal complement
ccomp
marks clausal dependents of verbs that function like a complement of that verb. The complement clause has its own internal subject.
Jeder hier glaubt , daß er eine Chance hat . \n Everyone here thinks that he has a chance .
ccomp(glaubt, hat)
nsubj(hat, er)
Es heißt , die Arbeiter würden streiken . \n People say the workers are on strike .
ccomp(heißt, streiken)
Wann kann ich mir anschauen , was du gemacht hast ? \n When will I see what you have done .
ccomp(anschauen, gemacht)
compound
: compound
This document is a placeholder for the language-specific documentation
for compound
.
compound:prt
: separable verb particle
Depending on the clause type in German, particles and verb stems of particle verbs either stand together or separate in the sentence. compound:prt
is used to mark the separated particles of particle verbs. It is a subtype of the compound relation.
In main clauses, particles appear in sentence-final position separate from their verb stem, which stands in second position.
Der Koch schlägt die Eier auf . \n The chef breaks the eggs .
compound:prt(schlägt, auf)
In subordinate clauses, particle verbs appear with their particles in sentence-final position. In this case, they form a single token.
... , weil der Koch die Eier aufschlägt . \n ... , because the chef breaks the eggs .
conj
: conjunct
This document is a placeholder for the language-specific documentation
for conj
.
cop
: copula
This document is a placeholder for the language-specific documentation
for cop
.
csubj
: clausal subject
csubj
marks a clausal subject of a sentence.
Aber warum nur so wenige Frauen ein Polizeipräsidium leiten , hat verschiedene Gründe . \n But why only so few women lead a police department has different reasons .
csubj(hat, leiten)
For copula constructions, the head of the clausal subject is the predicative complement of the copula.
Ob dies die Unzufriedenheit zu zügeln vermag , ist zweifelhaft \n Whether this can control the unrest is dubious .
csubj(zweifelhaft, vermag)
csubjpass
: clausal passive subject
csubjpass
marks clausal subjects of passive clauses.
Hier kann nicht mehr eingeschätzt werden, wann es anfängt zu brennen . \n It cannot be estimated anymore when it starts burning .
csubjpass(eingeschätzt, anfängt)
dep
: unspecified dependency
This document is a placeholder for the language-specific documentation
for dep
.
det
: determiner
det
marks the relation between a noun and its determiner. Attributively used indefinite, demonstrative, or interrogative pronouns are also marked with det
.
Der Mann betrat eine Küche . \n The man entered a kitchen .
det(Mann, Der)
det(Küche, eine)
Dieses Mädchen erfuhr wenige Sekunden später, welche Note sie bekommen hatte . \n This girl found out only few seconds later which grade she had gotten.
det(Mädchen, Dieses)
det(Sekunden, wenige)
det(Note, welche)
discourse
: discourse element
This document is a placeholder for the language-specific documentation
for discourse
.
dislocated
: dislocated elements
This document is a placeholder for the language-specific documentation
for dislocated
.
dobj
: direct object
obj
marks a noun phrase that is the direct object of a verb. The direct object is in accusative case.
Die Frau gibt dem Kind einen Apfel . \n The woman gives the child an apple .
dobj(gibt, Apfel)
expl
: expletive
This document is a placeholder for the language-specific documentation
for expl
.
fixed
: multi-word expression
This document is a placeholder for the language-specific documentation
for fixed
.
flat
: name
The flat
relation is one of the three relations for compounding in UD (together with compound and fixed). It is used for proper nouns constituted of multiple nominal elements. For example, flat
would be used between the words of Hillary Rodham Clinton, New York, or Carl XVI Gustaf but not to replace the usual relations in a phrasal or clausal name like The king of Sweden or the novels The Lord of the Rings and Captured By Aliens.
Words joined by flat
should all be part of a minimal noun phrase; otherwise regular syntactic relations should be used. This is basically similar to the treatment of noun compounds with compound, except that in many cases parts of the name may be another nominal element such as an adjective (United Airlines).
In general, names are annotated in a flat, head-initial structure, in which all words in the name modify the first one using the flat
label.
Carl XVI Gustav
name(Carl, XVI)
name(Carl, Gustav)
Frankfurt am Main
nmod(Frankfurt, Main)
case(Main, am)
foreign
: foreign words
This document is a placeholder for the language-specific documentation
for foreign
.
goeswith
: goes with
This document is a placeholder for the language-specific documentation
for goeswith
.
iobj
: indirect object
iobj
marks a noun phrase that is the indirect object of a verb. The indirect object is in dative case.
Die Frau gibt dem Kind einen Apfel . \n The woman gives the child an apple .
iobj(gibt, Kind)
list
: list
This document is a placeholder for the language-specific documentation
for list
.
mark
: marker
This document is a placeholder for the language-specific documentation
for mark
.
neg
: negation modifier
neg
marks the relation between a negation word and the word it modifies.
Er hat den Mann nicht gesehen . \n He didn't see the man .
neg(gesehen, nicht)
Er will nicht mehr Fußball spielen . \n He doesn't want to play soccer anymore .
neg(mehr, nicht)
Er hat keinen Regenschirm mitgebracht . \n He didn't bring an umbrella .
neg(Regenschirm, keinen)
nmod
: nominal modifier
This document is a placeholder for the language-specific documentation
for nmod
.
nmod:poss
: nmod:poss
This document is a placeholder for the language-specific documentation
for nmod:poss
.
nsubj
: nominal subject
nsubj
marks noun phrases that are the subject of a finite clause. The head of nsubj
is typically a verb, but can be another noun phrase or adjective, for example in copula constructions.
Die Frau schläft . \n The woman sleeps .
nsubj(schläft, Frau)
Die Frau ist Ärztin . \n The woman is a doctor .
nsubj(Ärztin, Frau)
Die Frau ist müde . \n The woman is tired .
nsubj(müde, Frau)
nsubjpass
: passive nominal subject
nsubjpass
marks the subject of a passive clause.
Das Bild wurde von Picasso gemalt . \n The painting was painted by Picasso .
nsubjpass(gemalt, Bild)
nummod
: numeric modifier
nummod
marks numeric modifiers that modify the meaning of a noun with a quantity.
eine Milliarde Menschen \n one billion people
nummod(Menschen, Milliarde)
Er bezahlte 50 Euro . \n He paid 50 Euros .
nummod(Euro, 50)
orphan
: remnant in ellipsis
This document is a placeholder for the language-specific documentation
for orphan
.
parataxis
: parataxis
This document is a placeholder for the language-specific documentation
for parataxis
.
punct
: punctuation
This document is a placeholder for the language-specific documentation
for punct
.
reparandum
: overridden disfluency
This document is a placeholder for the language-specific documentation
for reparandum
.
root
: root
This document is a placeholder for the language-specific documentation
for root
.
vocative
: vocative
This document is a placeholder for the language-specific documentation
for vocative
.
xcomp
: open clausal complement
This document is a placeholder for the language-specific documentation
for xcomp
.


Speakeasy II
Saturday 12 March 2016, 6.30pm
Bonnington Cafe, 11 Vauxhall Grove, London, SW8 1TD
Speakeasy I
Saturday 12 December 2015
Bonnington Cafe, 11 Vauxhall Grove, London,
Speakeasy I
Saturday 12 December 2015
Bonnington Cafe, 11 Vauxhall Grove, London,


Computer Aided Design
Week 2
Computer Aided Design (CAD)
Tasks
model (raster, vector, 2D, 3D, render, animate, simulate, ...) a possible final project
Publish it through git
Raster/vector work
I started this task by thinking the best way to design my mushroom greenhouse and give it a proper name. I thought about creating animated gifs and image editing to explain better the concept . I decided the product is going to be called CogusDome, give your cogus Box a Home!
I made the logo in Illustrator, with the help of photoshop, and the Live trace tool. I also created an animated gif with the use of Photoshop. It's a multilayer software and it was easy to do it. I followed an online tutorial
Animated GifCreating the Animation in Photoshop
References - Animated Gif's in Photoshop
3D model
I changed the initial shape for my greenhouse prototype. I Talked with Fernando about giving a geodesical dome shape to it, and he liked. I'm going to create a modular dome, that can be disassembled into small parts for easier transportation.
I usually create my 3d models in Autodesk 3D Studio Mask, and for this purpose (renders and animation), i did it all with this software.I used Vray render engine.
Final Render
I'm planning to learn Onshape during Fabacademy so i can create parametric 3d models easier and the possibility to do it online it's great.
References - VRay
Animation
I made the animation in 3D Studio Max. It's a process where tou have an easy interaction between the objects and the timeline. The animation explains how the composite recharge is introduced into the greenhouse drawer.
References - 3D Max Animation ,
GIT
I just had to do the GIT Mantra:
cd ~/Desktop/"yourdirname"/"yourgithubdirname"
git pull
git add .
git status
git commit -m "short description of the changes you made"
git push


Posted by TTP Insights on April 21, 2018
Posted by Tommy on April 21, 2018
Posted by Lorenzo on April 21, 2018
Posted by Andy on April 21, 2018
Posted by Tommy on April 20, 2018
Posted by Jay April 19, 2018


Accessibility
Help your service meet it's accessibility requirements.
GOV.UK accessibility guidance
- Helping people to use your service
- Testing for accessibility
- Using the empathy lab at GDS
- User profiles for understanding disabilities and impairments


| Root Element | Top | Root | Record | Field | Query | Notes | Examples | Quick Ref |
The root element of the ClearQuest/VCS integration server is ClearQuest.
The root element has four mandatory attributes:
The root element has one optional attribute:
When complete, your root element should look similar to following:
<ClearQuest login='cq_user' password='password' db='prodd' repo='prodr'>
* You can't have more than one root element in XML. If you need to send multiple commands, send multiple record/query elements within one root element or make multiple connections to the server.
| Record Elements | Top | Root | Record | Field | Query | Notes | Examples | Quick Ref |
Record elements represent the record types that you wish to perform actions upon. At this time, the only records that can be accessed through the ClearQuest/XML Interface are defect records.
Record elements have three attributes.
When complete your record element should look similar to following:
<defect id='prodd00301000' action='modify' wait='yes'>
| Field Elements | Top | Root | Record | Field | Query | Notes | Examples | Quick Ref |
Field elements specify fields that you would like to operate upon. The fields are the names as saved in the ClearQuest database not the ClearQuest form. For example, the Version field is saved in the database as "version_reported". To see field database names, click on the field within ClearQuest and look for the DB Field Name or use the ClearQuest Data Dictionary.
Field elements have one optional attribute.
When complete, your field element should look similar to the following:
<headline behavior='replace'>new headline value</headline>
| Query Elements | Top | Root | Record | Field | Query | Notes | Examples | Quick Ref |
Query elements specify queries to run through the server.
Query elements have two attributes.
When complete, your query element should look similar to the following:
<query name='Public Queries/My To Do List' wait='yes'/>
To use prompted queries, use 'prompt#' as the field element names where each number is equivalent to the oter the query prompts on the web.
Prompted queries should look similar to the following:
<query name='Public Queries/Prompt Old Defect #' wait='yes'>
<prompt1>TR209823914<prompt1>
</query>
| Important Notes | Top | Root | Record | Field | Query | Notes | Examples | Quick Ref |
<defect ...
<platform behavior='replace'>Solaris 10 SPARC<platform>
<platform behavior='add'>Solaris 9 SPARC<platform>
| Examples | Top | Root | Record | Field | Query | Notes | Examples | Quick Ref |
<ClearQuest login='cq_user' password='password' db='prodd' repo='prodr'>
<defect id='prodd00301000' action='modify' wait='yes'>
<headline/>
<owner/>
</defect>
</ClearQuest>
<ClearQuest login='cq_user' password='password' db='prodd' repo='prodr'>
<defect id='prodd00301000' action='assign' wait='no'>
<owner>new_owner</owner>
<priority>3-Normal Queue</priority>
</defect>
</ClearQuest>
<ClearQuest login='cq_user' password='password' db='prodd' repo='prodr'>
<defect id='prodd00301000' action='modify' wait='no'>
<platform behavior='add'>Linux Unknown Unknown<platform>
</defect>
</ClearQuest>
<ClearQuest login='cq_user' password='password' db='prodd' repo='prodr'>
<defect id='prodd00301000' action='modify' wait='no'>
<planned_release>Release v2.1 IT<planned_release>
</defect>
</ClearQuest>
<ClearQuest login='cq_user' password='password' db='prodd' repo='prodr'>
<defect action='submit' wait='yes'>
<component>Component A</component>
<description>problem found when you do bad things</description>
<headline>problem</headline>
<product>Product A</product>
<version_reported>v1.2</version_reported>
<severity>4-Minor</severity>
</defect>
</ClearQuest>
| Quick Reference | Top | Root | Record | Field | Query | Notes | Examples | Quick Ref |
| element | sub-elements | attributes | notes | ||
|---|---|---|---|---|---|
| label | required | valid values 1 | |||
| ClearQuest | defect query |
login | yes | ||
| password | yes | Either the password or encrypted attribute is required. | |||
| encrypted | no | ||||
| db | yes | ||||
| repo | yes | ||||
| email-fail | no | ||||
| defect | any defect field | id | yes | ||
| action | no |
view
submit assign open resolve validate release approve close re-submit postpone reject request_info supply_info |
The defect must be in the appropriate state to perform the action. | ||
| wait | no |
no
yes |
|||
| [defect field] | behavior | no |
replace
add remove |
||
| query | prompt# | name | yes | Examples of valid prompt labels are: prompt1, prompt2 ... | |
| wait | no |
no
yes |
|||
| [prompt#] | operator | no | [web value] | The default operator is dependent upon the field type. Check the web interface to verify the default value. |
| Updated: | Top | Root | Record | Field | Query | Notes | Examples | Quick Ref |


A module should have one, and only one, reason to change
class ChessBoard {
protected $board;
public function __construct($size){}
public function placeQueen($x, $y){}
public function renderToScreen(){}
public function renderToJSON(){}
}
class ChessBoard {
protected $board;
public function __construct($size){}
public function placeQueen($x, $y){}
}
class ChessBoardRenderer {
protected $chessBoard;
public function __construct(ChessBoard $chessBoard){}
public function renderToScreen(){}
public function renderToJSON(){}
}
A software artifact should be open for extension but closed for modification
class ChessBoard {
protected $board;
public function __construct($size){}
public function placeQueen($x, $y){}
}
class ChessBoardRenderer {
protected $chessBoard;
public function __construct(ChessBoard $chessBoard){}
public function renderToScreen(){}
public function renderToJSON(){}
}
class ChessBoard {
protected $board;
public function __construct($size){}
public function placeQueen($x, $y){}
}
interface ChessBoardRenderer
{
public function render();
}
class ScreenChessBoardRenderer implements ChessBoardRenderer {
protected $chessBoard;
public function __construct(ChessBoard $chessBoard){}
public function render(){}
}
class JSONChessBoardRenderer implements ChessBoardRenderer {
protected $chessBoard;
public function __construct(ChessBoard $chessBoard){}
public function render(){}
}
What is wanted here is something like the following substitution property: If for each object o1 of type S there is an object o2 of type T such that for all programs P defined in terms of T, the behavior of P is unchanged when o1 is substituted for o2 then S is a subtype of T
class Rectangle {
protected $width;
protected $height;
public function __construct($width, $height){}
public function area(){}
}
class Square extends Rectangle {}
class Main {
public static function getArea(Rectangle $rectangle) {
return $rectangle->area();
}
}
interface AreaCalculateable
{
public function area();
}
class Rectangle implements AreaCalculateable {
protected $width;
protected $height;
public function __construct($width, $height){}
public function area(){}
}
class Square implements AreaCalculateable {
protected $side;
public function __construct($side){}
public function area(){}
}
class Main {
public static function getArea(AreaCalculateable $shape) {
return $shape->area();
}
}
interface ShapeInterface {
public function area();
public function volume();
}
interface FlatShapeInterface {
public function area();
}
interface SolidShapeInterface {
public function volume();
}
class Controller {
public function __construct(){}
public function save()
{
$db = new MysqlDB();
$db->save($this);
}
}
class Controller {
public function __construct(DB $db){}
public function save() {
$this->db->save($this);
}
}


This module allows automatic extraction information regarding publications of authors. The publications will be stored in different graphs by provider.
Publications
"Publications-Manager" descripcion...
get publications data
Process Run


--- layout: about title: About ---
You can reach me at email<EMAIL_ADDRESS>github: https://github.com/successcw
Thank You for reading!


To the surprise of just about everyone, Apple announced a new programming language, Swift, at WWDC this Monday. This is a rare event for us programmers, as we don’t often get to see what the biggest technology company on the planet (who owns one of the biggest platforms on the planet) thinks about programming language design.
Swift embodies two major themes in programming language design that have come to the forefront in the last several years: functions as first-class values (a given, these days), and, more surprisingly, static typing.
Why this matters
Apple is the biggest technology company in the world. Their platform—iOS—is one of the largest in the world (possibly the largest, depending on how you want to measure it). The tools they provide will be used by millions of developers, but developers must continue to want to use those tools. Their decisions must be both self-serving and developer-friendly.
Apple also doesn’t make decisions lightly or on a whim. Apple is careful, controlled, and calculating. As evidence: Swift has been in development since 2010 and they’ve managed to keep it entirely secret.
What all this means is that we’re seeing a programming language designed to be used by millions of users, designed by a company made up of incredible technologists, with a heavy focus on design, produced after careful thought and consideration. Like I said, this doesn’t come along very often.
So what features does Apple think a modern programming language should have?
Swift’s Unsurprising Featureset
Reading “The Swift Programming Language” (a quick an easy read, BTW), I found myself nodding along with each feature introduced. Tuples: check. Named Parameters: check. Default Parameters: check. Protocols: check. Functions: check. Properties: check. With one exception1, there’s not a feature in Swift that hasn’t been part of at least one other mainstream programming language that’s come to prominence in the last 10 years. And that’s the point.
From one of the authors’ web page:
Of course, it [Swift] also greatly benefited from the experiences hard-won by many other languages in the field, drawing ideas from Objective-C, Rust, Haskell, Ruby, Python, C#, CLU, and far too many others to list.
Although programming-language nerds will take issue with much of how Swift implements particular features, few of these features themselves are controversial. Of course a modern programming language will have tuples and pattern-matching. Of course a modern programming language will have functions. Of course a modern programming language will provide a solution to the dreaded billion-dollar mistake.
We all knew that Apple had to come out with a new language at some point. A lot of us hoped it would be an existing language (Ruby?), but I think we all knew in our heart of hearts that that’s just not Apple. Apple likes to control its own destiny, even if it can’t quite be the best initially.
The big unknown for me, and the question whose answer I was most anxious about was: would Apple go the Ruby/Clojure way and eschew static typing, or would they strengthen the type system in Objective-C and make a statically-typed language?
We now have our answer.
Static Typing is Here to Stay
Swift’s type system is best described as “way better than Java’s”, or perhaps “far more comprehensible than Scala’s”. In fact, Swift could be viewed as yet another new language designed for high-performance and developer productivity that uses static typing as a means to achieve it. Like Scala, Go, and Rust before it, Swift doesn’t shy away from requiring that programmers provide type information for variables and parameters.
This isn’t Java–Swift makes heavy use of type inference so that the types of your variables and parameters can be known without having to specify them explicitly. In general, it looks like method signatures will likely need type annotations, but little else (this has been my experience with Scala as well).
Much like Apple’s decisions on hardware design, visual interface, and user interaction, their decisions designing Swift can be viewed as a broad statement about programming language design, developer productivity, and developer happiness.
From “The Swift Programming Language” (emphasis mine):
Swift adopts safe programming patterns and adds modern features to make programming easier, more flexible, and more fun…Swift combines the best in modern language thinking with wisdom from the wider Apple engineering culture. The compiler is optimized for performance, and the language is optimized for development, without compromising on either.
Apple is saying more than “static types are great for performance” or “static types make IDEs better”. They are saying that their belief on the best way to write code is (among many other things) to use a statically-typed language. I find this fascinating. And they aren’t alone.
My God, it’s Full of Types
Android uses Java, a statically-typed language (which, admittedly, has a shitty type system). Google internally makes heavy use of C++ and Go, both statically typed. Twitter was an early adopter of Scala, despite the fact that they started out as a Ruby shop and that JRuby is a pretty awesome way to use the JVM. Even Facebook’s Hack language has support for type annotations.
The only major platform not using a typed language is the Web. This fact is certainly not the result of deep thinking and analysis, because the Web isn’t a managed platform. It’s more of a Mexican standoff that’s somehow keeping JavaScript alive.
What this means is that a lot of smart people, whose businesses depend on a functional and performant platform that must also attract developers (either as partners or employees), are all going with statically-typed languages. It’s hard to argue that the future of programming is anything other than better and more expressive type systems, checkable by a computer.
Ignore this trend at your peril.
- The notion of giving named parameters different names for the caller than are used in the implementation is not something I’ve seen before, and it’s kinda genius. It seeks to make the callsite more readable without a cost to the function’s implementation. ↩


400 Point Clear Breadboard - BB4C
Summary
Name: 400 Point Clear Breadboard
ID: BREB-P400-C-STAN-01
Hex ID: BB4C
WebPage: https://github.com/oomlout/oomlout-OOMP/wiki/BREB-P400-C-STAN-01
Short URL: http://oom.lt/BB4C
Revision History: https://github.com/oomlout/oomlout-OOMP/blob/master/parts/BREB-P400-C-STAN-01/
| Type |
Size |
Color |
Description |
Index |
BREB Breadboard |
P400 400 Point |
C Clear |
STAN
|
01
|
Images
About
The start of any project. Great for quickly prototyping a new ciruit. Compatible with most 2.54 mm (0.1") components.
Common Uses
This part is commonly used as:
*a base for prototyping new circuits.
Specifications
| Info |
Value |
| Type |
Breadboard |
| Size |
400 Point |
| Color |
Clear |
| Pitch |
2.54 mm |
| Width |
53 mm |
| Height |
8.5 mm |
| Length |
82 mm |
| Maximum Voltage |
300 v |
Extra Details
Spotted a mistake, want to add more? Let us know<EMAIL_ADDRESS>All images and resources are licensed [CC BY-SA] unless otherwise stated (ie. the datasheets)


 Do you have any idea where you are? You must be able to tame beasts if you expect to win this Clan Hall.
Don't bite off more than you can chew, my friend!
"I want to demonstrate my ability."


My First Heading
My first paragraph.
My Second paragraph
My third paraaaaaaaaaaa
CARLOS IS THE BOSS of aws


Welcome
My name is Symeon Papadimitropoulos. I am a post-doctoral fellow in the Applied Mathematics Department, at University of California, Merced.
A detailed CV.
Contact
Applied Mathematics Department
Faculty of Natural Sciences
University of California, Merced
symeon [at] ucmerced dot edu


Most people with a kidney infection can be treated at home with a course of antibiotics, and possibly painkillers as well. See your GP if you have a fever and persistent tummy, lower back or genital pain, or if you...
Treating conjunctivitis
More
The recommended treatment for conjunctivitis will depend on whether it is caused by infection, an allergic reaction or an irritant such as a stray eyelash. Each treatment option is discussed in more detail below...
First Aid & Emergencies - Heart Attack
More
Call 911 Chest discomfort that may last more than a few minutes or go away and come back; it may feel like squeezing, fullness, pressure, or pain. Pain or discomfort in the upper body, including arm, left...


@(title: String)(subject_options: Html)(number_options: Html)(operator_options: Html)(quarter_options: Html)(credit_options: Html)(instructor_options: Html)(campus_options: Html)(time_operators: Html)(time_options: Html)


Your Wi-Fi is terribad — here's how to fix it
Source: iMore
From watching your favorite series on Disney Plus or Netflix to surfing the web on your iPhone or iPad, having a fast, reliable Wi-Fi connection in your home is essential. If you're not happy with your speeds, there are steps you can take to make it better. Take a look.
Does your hardware or software need replacing?
Source: Linksys
Your router's performance is heavily tied to its age, from both a hardware and software perspective. If you don't know when the router was purchased (because it was so long ago), consider this a big red flag.
Beyond this, make sure your router's using the latest firmware and supports the latest wireless technology, IEEE 802.11ac. This technology offers the best download and upload speeds to date and has improved range compared to older technologies like IEEE 802.11b.
You can get answers to all of these questions from your Internet Service Provider (ISP). It can let you know whether you need a new router and convey which ones it supports. It can also assist you with installing firmware updates.
Do not purchase a new router before first checking with the ISP.
Check your router's position
The position of your router in your home goes a long way in determining connection quality. Metal objects and appliances that emit electromagnetic waves can cause immediate issues like interference, while those made of plastic, wood, or cardboard are less problematic.
Universally, the kitchen is the worse room in a home to place a router due to many appliances in one place, both big and small. This is also true for any location with a washing machine or tumble dryer. Make sure to avoid these locations.
Switch your router to a new channel
Source: PIxabay
Wi-Fi broadcasts, like physical highways, operate on various channels. In most countries, these include the non-overlapping channels of 1, 6, 11, and 14. By default, most folks are using Channel 1 or Channel 6.
If you can, you should switch the channel on your router to "Auto." Otherwise, try turning it from Channel 1 or Channel 6, or vice versa. You'll need to log into your router and follow the router-specific directions to make the change.
If changing the channel doesn't make a difference in the performance of your Wi-Fi connection, switch it back to the original channel.
What's the frequency, Kenneth?
When it comes to wireless connections, there are two frequencies, 2.4 GHz and 5 GHz. Most modern routers are set up to switch automatically between the two. Older ones cannot, however. If that's the case with your router, you might want to troubleshoot by switching to 5 GHz and see if that makes a difference on your network. Keep in mind, however, that many devices use 2.4 GHz only, so switching to 5 GHz could cause additional problems on your system.
Ideally, your router should be set to switch back and forth automatically. Check with your ISP for further direction.
Add a password
Source: Pixabay
It's almost 2020, but some home Wi-Fi users still refuse to add an encrypted password to their network. If you're one of those folks, it's time to finally pivot 180 degrees and make the switch. Adding an encrypted password to your router will better protect it from the outside world, including Wi-Fi vampires who might be using your connection for free.
When creating a password, use a combination of uppercase and lowercase letters, as well as symbols and numbers. Additionally, make your password at least eight characters. Otherwise, the password could get hacked.
You can make a password change using the interface that your router supports.
Do you have a bandwidth hog?
Source: iMore
If your network's performance suddenly takes a dive, you might have a device, or an application on a device, grabbing more bandwidth than necessary. Sometimes, this is the result of a bug or a recent power outage. Regardless, you can check the bandwidth on your network by logging into your router as an administrator.
Often, rebooting a pesky device is all it takes to bring it back online normally once again.
Add an extender
Unfortunately, moving your router to a new location isn't always possible, depending on how it connects to the internet. For example, your home might only have one cable or phone connection that cannot be moved. In situations like this, or in larger homes where you want to maximize your connection, a larger Wi-Fi antenna might be necessary. Another solution is to purchase a Wi-Fi extender. Sometimes called a Wi-Fi booster or repeater, these accessories amplify your router's signal. These require the creation of a new network in your home, however, which can get confusing.
Switch to a Mesh network
Source: Google
A far better solution in recent years is to install a mesh network that connects directly to your router. Mesh kits come in various forms and help to eliminate network dead spots in a home. Unlike extenders that require the creation of different networks inside a home, a mesh network lets you spread one signal evenly using Wi-Fi points that you place around your home. In doing so, your devices are always connected to the same signal in the location.
Mesh Wi-Fi kits aren't cheap, but they have the added advantage of giving you better control of your overall network. With a mesh network, for example, you can create guest networks with ease. Some also come with built-in virus and malware protection and parental controls. You can find our favorite mesh kits here:
Reboot
Finally, reboot your router regularly. In doing so, you can often eliminate traffic congestion. A reboot clears the router's memory and, in some cases, allows updates to install.
Questions?
Are you still have problems with your Wi-Fi connection? Let us know in the comments below, and we'll try to assist further.


°C
°F
Weather Conditions are:
Made for Free Code Camp Weather App project by Mayur Wadhwani
Cover template used from
Bootstrap
, credits to
@mdo
.


Let's fire a statement, only once the Document is ready!
We're completing these tasks in Submlime and the console.
The document ready function that you will add:
$( document ).ready(function() { // statement here });
// statement here
comment, add a console log statement that returns Ready!
.
console.log('Ready!');
Ready!
after the document has finished loading.


PLANET SICK-BOY: http://www.sick-boy.com
TV scribe David E. Kelley's second big-screen effort of the year is a hackneyed adult version of The Mighty Ducks. Film fans, beware – this does not mean Slapshot. In the movie, a small Alaskan town – and its highly competitive brand of ice hockey - graces the cover of Sports Illustrated, culminating in a showdown with the New York Rangers. It's a typical David-versus-Goliath picture, with the `loser' title affixed only to the sucker in the audience that plunked down green to watch this slow-moving abomination.
The first words in Mystery, Alaska are an expletive spoken by a kid too young to know any better. I'm not sure if this is supposed to be Kelley's attempt at irony (most of the adults say `jeez' and `for God's sake' a la another snowy pic, Fargo) or his craving to work `blue' after years and years of living under the watchful eye of television censors. Remember Betty White in Kelley's summertime flop Lake Placid? It's probably the latter.
As the film opens, Mystery eagerly awaits the new issue of Sports Illustrated, where a feature piece on the town's beloved `Saturday Game' is scheduled to appear. Arriving not long after the magazine is former resident Charles Danner (Hank Azaria, Mystery Men) an employee of Sports Illustrated, who arrives bearing great news – the National Hockey League, impressed with the article, has agreed to fly the New York Rangers to Mystery for an exhibition game against the locals.
Here is Problem No. 1: I can look past the fact that the New York Rangers would never play Mystery, but why would the game take place in Alaska? Would it not make more sense to fly the Mystery players to New York so that the game could be played on a real ice rink? In a bigger arena? Where you wouldn't need to fly a television crew and legions of media personalities? Mystery has 32 days to prepare for the game, both in terms of team preparation and to remedy the fact that they usually play on a pond in front of about fifty people. They acquire a Zamboni while workers quickly build a grandstand and install intricate lighting. In one shot, the film shows four cranes building the outdoor rink. I don't think there are four cranes in the entire state of Alaska, let alone Mystery.
And let's talk about the advertising. Once the game begins, viewers will see a ton of advertising both on and around the rink. Locals even complain about this advertising, which is simply the filmmaker's way of saying `See, this isn't really product placement. It's an integral part of the story.'  Use make-believe advertisers if you want, but don't try to legitimize the giant Coca-Cola logo at center ice that fills the entire screen for the opening face-off.
There are plenty of other things to complain about, like the fact that Kelley manages to somehow wedge in a legal battle involving the potential opening of the mega-store Price World and its Mystery-bashing emissary (Michael McKean). Or the use of the Winetka brothers (Adam Beach and Leroy Peltier) lifted right from Slapshot's Hansons. Or the cameo from Mike Myers (Mystery director Jay Roach also helmed both Austin Powers pics), which reveals the actor's unfunny side.
None of the above complaints come close to matching the annoying and time-consuming subplot in which the team coach/town sheriff John Biebe (Russell Crowe, L.A. Confidential) is dropped from the big game in favor of a younger, faster player with premature ejaculation. This, exacerbated by the arrival of his wife's (Mary McCormack, True Crime) high school sweetheart (Azaria), leads to rocky times in the Biebe household, leaving the film filled with the gooey sentiment of the worst imaginable Hallmark card.
Highlights include town judge/coach Burt Reynolds (Boogie Nights), who resembles another old guy named Burgess Meredith in Rocky, shouting advice to his team through clenched jaw and…well, that's about it. (1:59 – R for adult language and sexual content)
The review above was posted to the
rec.arts.movies.reviews newsgroup (de.rec.film.kritiken for German reviews).
The Internet Movie Database accepts no responsibility for the contents of the
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Related links: index of all rec.arts.movies.reviews reviews


Requirements Gathering
I added some "post-specs" annotations in orange to describe how we plan to address each requirement.
Requirements from various people
Roman (iSAAC)
Use case 1
- Roman finds a pile-up in a real iSAAC alignment by using IGV and wants to understand where the reads come from, in order to figure out if the pile-up could have been avoided by aligning reads better
- I look at my simulated dataset and also see a pile-up at the same place
- I can track where those reads came from
- I'd also like to track if some reads that should have aligned in this pile-up actually aligned somewhere else
It is already possible to do this, but it takes several minutes to track each read, which is not great for pile-ups of 10,000 reads...
eagleTrackReads --region=chr10:42385240-42385240 --output-text
=>
N correctly aligned reads:
read 1
read 2
N False Positive reads:
read 3, should map to other loc X
N False Negative reads:
read4, should map here, loc Y
Richard & Ole (Grouper)
1) General alignment testing
- Iterate through all generated reads checking their alignment to the generated position
- At least count them but as a refinement can then break down into categories of misalignment (e.g. resulting in false chimeric pair)
- As a simple case, skip regions affected by structural variants. A more sophisticated approach would suggest where reads affected by such variants should align to the reference (rather than sample genome). The latter could be complicated, e.g. an evenly split read could correctly align to one of two reference genome positions.
2) False positive variant call.
Will have the evidence reads for the call & where they were mapped - want to look up (by ID) where they came from.
3) False negative variant call.
Given an event in VCF format, report the reads affected - the ones that the variant caller should have detected as evidence.
A simple approach might be to report all reads in the vicinity of the event junctions - hopefully at least excluding reads from the other strand in the heterozygous case. A more sophisticated approach would filter this down to split reads and those expected to be anomalously mapped (e.g. a read pair is generated that spans a deletion, so the correct reference positions are anomalously far apart. Note: For the simulator, the question is simply whether the mapping separation has changed; variant callers have to start from whether the separation is outside the statistical norm.).
4) Event coverage check.
An event location might have no reads mapped to it. Is this because no reads were generated at that location (due to random coverage) or because the affected reads were mapped elsewhere?
configureEAGLE --variants=simulatedVariants.vcf --post-run-cmd=scriptToCallIsaacAndGrouper
eagleVcfSubtraction --simulated-variants=.../eagle/simulatedVariants.vcf --called-variants=.../grouper/calledVariants.vcf --output-text --show-reads-stats --output-bam=variants.bam
=>
N correctly called variants:
variant 1
n TP, n FP, n FN
variant 2
n TP, n FP, n FN
N False Positive variants:
variant 3, didn't exist in simulated variants
n TP, n FP, n FN
N False Negative variants:
variant 4, didn't get called
n TP, n FP, n FN
+ variants.bam contains all these reads
Fiona (Strelka validation)
Aim: Identifying how accurate Strelka is (specificity/sensitivity).
Same requirements as for Grouper, but in a Normal+Tumour simulation scenario:
Make graph of FP/FN(/TP/TN) to find best Q cutoff for various Tumour coverage, Normal coverage (and purity)
configureEAGLE --workflow=normal+tumour --normal-variants=normalVariants.vcf --tumour-only-variants=tumourOnlyVariants.vcf --normal-coverage=60 --tumour-overall-coverage=60 --tumour-purity=1.0 --post-run-cmd=scriptToCallIsaacAndStrelka (--post-run-vcf=.../strelka/calledVariants.vcf --analyse-vcf)?
eagleVcfSubtraction --simulated-variants=.../eagle/tumourOnlyVariants.vcf --called-variants=.../strelka/calledVariants.vcf --output-text
=>
N correctly called variants:
variant 1
variant 2
N False Positive variants:
variant 3, didn't exist in simulated variants
N False Negative variants:
variant 4, didn't get called
Other test: check how Strelka handles CN.
Same flow + use the --tumour-only-cnv=tumourOnlyCNV.tab option.
Adrian
Analysing aligned data systematically
- looking at regions that are very strange
- table: reads id, where it was sampled, pos where it was aligned
Wants to be able to see specific regions interactively.
eagleTrackReads --region=chr1 --output-bam=chr1info.bam
=>
Large BAM file showing all the TP/FP/FN and corrected FP/FN in different read groups
OR, if the previous tool would take too long to run:
On-the-fly generation for IGV (http-server/cgi-bin/query.cgi? -style)
Nick (Ivory Tower)
I think it would be interesting as a first step to see whether EAGLE displays the same behaviour that we see in real builds.
So for example if you have 2 x 200X builds from the same sample, what are the SNP discordances?
Do you see discordant SNPS where there is a biased allele frequency?
There's some suggestion that this might be due to mapping problems, in which case they ought to show up in EAGLE.
configureEAGLE --variants=simulatedVariants.vcf --coverage=200 --random-seed=1 --post-run-cmd=scriptToCallIsaacAndGrouper EAGLE1
configureEAGLE --variants=simulatedVariants.vcf --coverage=200 --random-seed=2 --post-run-cmd=scriptToCallIsaacAndGrouper EAGLE2
eagleVcfSubtraction --simulated-variants=.../EAGLE1/simulatedVariants.vcf --called-variants=.../EAGLE1/grouper/calledVariants.vcf --output-bam=variants.bam
eagleVcfSubtraction --simulated-variants=.../EAGLE2/simulatedVariants.vcf --called-variants=.../EAGLE2/grouper/calledVariants.vcf --output-bam=variants.bam
diff EAGLE1/grouper/snp.vcf EAGLE2/grouper/snp.vcf
+ manual BAM visualisation in IGV
Sergii
- Generate tumor DNA fragments from a large VCF file + Copy Numbers
- Generate normal DNA fragments just with VCF variants
- Merge normal + tumour and generate Run folder
- Align with BWA
configureEAGLE --workflow=normal+tumour --normal-variants=normalVariants.vcf --tumour-only-variants=tumourOnlyVariants.vcf --tumour-only-cnv=tumourOnlyCNV.tab --normal-coverage=60 --tumour-overall-coverage=60 --tumour-purity=0.6 --post-run-cmd=scriptToCallBWA
Note: We need to update our CNV.tab specs so that the user uses post-genome-mutator allele contig names intead of ref contig names.
Wendy
Project using EAGLE simulation was Gamma distribution, but no need for post-analysis.
When we plotted the allele frequency of the non-ref allele, there's of course a peak at .5, but then there's another one around .25. one explanation is duplicated genes that look very similar.
Using read tracking, would it be possible to see how many reads are aligned to where they should be aligned to?The problem is that these positions don't appear in all genomes, was only noticeable when we tried to call de novo mutations with trios. So it may need extra modelling to test the hypothesis.... But assuming we model it right, it would be a matter of comparing the BAM file that went through an aligner, and the BAM file that was generated by EAGLE, and find areas that have significantly more mis-aligned reads?
Requirements for various datasets simulated with relationships
Cancer-Normal analysis
One thing we don't have at the moment is a generator/model of cancer variants. We can only get empirical data.
configureEAGLE --workflow=normal+tumour --normal-variants=normalVariants.vcf --tumour-only-variants=tumourOnlyVariants.vcf --normal-coverage=60 --tumour-overall-coverage=60 --tumour-purity=1.0 --post-run-cmd=scriptToCallIsaacAndStrelka
Trios analysis
Note: No requirements gathered, but seems needed.
configureEAGLE --workflow=trio --father-variants=fatherVariants.vcf --mother-variants=motherVariants.vcf --allele-from-father=1 --allele-from-mother=1 --father-coverage=30 --mother-coverage=30 --kid-coverage=60 --kid-sex=M
Cancer time series analysis
Not needed.
Requirements for business needs
- Knowing where to put efforts in the future ( = detecting our tools' deficiencies to address them efficiently)
- Understanding where our tools are better, and publicise our tools if they are actually better
Tool improvement / debugging
Requires: Detection + Interactive browsing for analysis
- Text
- Graphical
Tool validation (& regression testing)
Requires: Classification + Automated metrics handling
Metrics checked vs threshold
Tool benchmarking
Requires: Classification + Automated metrics handling
Metrics reported
Tools comparison
Requires: Classification + Automated metrics handling
Metrics compared (e.g. Comparing number of correctly aligned reads by different aligners)
Use cases
Alignment Analysis
Mostly covered by Roman and Adrian's requirements reported above.
In general, alignment analysis would really come in support to variant calling analysis, as aligned reads are not end-user material => we don't really care if an aligner did a bad job at a unused location, as long as the next tools (e.g. variant caller) are not affected.
Variant Calling Analysis
Main use case 1, required for Grouper and Strelka validation
Detection of false-positive and false-negative called variants.
For each false-negative (missing call): figure out why the contributing reads were not enough, which reads were misaligned and why.
For each false-positive (extra call): figure out why it was called. If it was due to misaligned reads, figure out where they should have been aligned, and why they didn't get aligned there.
Extended use case 1
The classification of variants may be extended: instead of being just {correctly detected, FP, FN}, the qualities, type of variants, expected ease of detection properties could also be used.
The classification can also be extended with post-analysis results.
Reads can also be classified:
- resulting in false chimeric pair
- ...
Use case 2: Improving one aligner by checking if another one works better
Instead of checking all the reads that were misaligned by (for example) iSAAC, we restrict our interest to the reads that led to incorrect variant calling. We want to only use 1 variant caller, but they are usually tightly coupled with their own aligner, so:
- Simulate a dataset with EAGLE
- Simulated dataset gets aligned by both iSAAC and BWA
- Variant calling is run on iSAAC alignement
- Each variant that was miscalled is checked against the reads of both iSAAC and BWA
The idea is that variants may be miscalled because iSAAC didn't align some reads properly, in which case we want to see if BWA did a better job at it.
If BWA did a better job, we could analyse why, and eventually use it to improve iSAAC.
configureEAGLE --variants=simulatedVariants.vcf --post-run-cmd=scriptToCallIsaacAndGrouper --post-run-cmd=scriptToCallBWA
eagleVcfSubtraction --simulated-variants=.../eagle/simulatedVariants.vcf --called-variants=.../grouper/calledVariants.vcf --output-text --show-reads-stats --output-bam=variantsIsaac.bam
=>
N correctly called variants:
variant 1
n TP, n FP, n FN
variant 2
n TP, n FP, n FN
N False Positive variants:
variant 3, didn't exist in simulated variants
n TP, n FP, n FN
N False Negative variants:
variant 4, didn't get called
n TP, n FP, n FN
+ variantsIsaac.bam contains all these reads
eagleVcfSubtraction --simulated-variants=.../eagle/simulatedVariants.vcf --called-variants=.../grouper/calledVariants.vcf --output-text --show-reads-stats --output-bam=variantsBWA.bam --use-other-aligner-data=...BWA...
Results output
IGV is a great way to visualise a "small" (good ~10 reads, up to ~100 reads) group of results concentrated around the same genomic position (good ~1kbases, up to 100 kbases).
When studying a larger number of reads such as a pile-up of 10,000 reads, it becomes impossible to fit them all in IGV. One alternative is to use command line tools for such cases.
When studying multiple reads that spawn across distant locations (for example if we have 60 reads that were supposed to be aligned at 1 location but that were aligned to a few other locations), it also becomes cumbersome to click on each of them and compare if their 60 mapped locations are the same or not. In this case again, the user will probably be better of using command line tools.
What we want to see/track in IGV
The use of read groups with colours will probably be the way to go to identify:
- Reads that were aligned correctly (True Positives)
- Reads that were aligned here (False Positives at this loc) but should have been aligned somewhere else (False Negatives at this other loc)
- We need a way to jump between the 2 locations easily
- and vice-versa: Reads that should have been aligned here (False Negative at this loc), but were aligned elsewhere (False Positive at this other loc) or were not aligned at all
There is a complication: paired reads
- if one read of a pair is correctly aligned but the other one isn't, we can have a different colour.
Performance considerations
- Generating a full genome BAM file for this is possible, but will take a long time.
Alternatives would be:
- Having a command-line tool that generates a BAM file for the reads related to 1 user-specified region
- Having an on-the-fly IGV generator/server like Phil is using for CRAM
What we want to see/track when using a command-line tool
The above-mentioned "command-line tool that generates a BAM file for the reads related to 1 user-specified region", followed by "samtools view" would allow the user to track a good number of useful things.
The drawback of this method is that linked reads (the 2 reads of a pair and the perfect alignment/misaligned read) are disjoint in BAM, needing some "sort by read ID" post-processing to bring them back together
=> It would be better if the BAM generator tool had an option for a different non-bam output, showing the same info in different ways.
Extras
One aim of this EAGLE Analysis sub-project is to figure out which associations are useful, and how fast each of these trackings need to go to be useful...
Another aim seems to be that we want to track further that just at the simulator's boundaries, for example to validate Grouper, we would track reads until Grouper's inputs (i.e. until the aligner's output), and then also parse Grouper's outputs to compare them with the simulation VCF inputs...
Something we don't plan to do
Comparing 2 variant callers by feeding them the same BAM file is tempting, but would be biased in practice due to the mapping qualities. As an example, GATK and Grouper expect different mapping qualities for the same "real qualities" of alignment... so we can't just feed them the same simulated.bam file, and even if we decided to generate 2 different bam files, we wouldn't know what quality values to use to give them equivalent meanings.
Our simulated.bam file will stay a debugging file rather than an input file to external tools.


You can systematically record partial payments made to your vendors by creating receipt vouchers. You can also adjust a payment against multiple invoices.
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Hi, This is Jingwei! I am a senior student from School of Electronic Information and Electrical Engineering, Shanghai Jiao Tong University (SJTU), majoring in Automtion with Artificial Intelligence as special track. I am a member of Zhiyuan Honors Program of Engineering, an elite student program affiliated to Zhiyuan College, SJTU. I am also a research intern of music at New York University Shanghai (NYUSH) under the supervision of Prof. Gus Xia.
I'm broadly interested in the computer music field, and my ultimate goal is to contribute to artificial music intelligence which renders better experience in creating, enjoying, and interacting with music. I've been doing several projects w.r.t. controllable music generation, music interaction with robotics, visiual and auditory perception, etc. Currently, I'm focusing on accompaniment generation via music representation learning. See my projects here.
Besides research, I'm a professional accordion player with 16 years of performance experience. I'm also a Bass singer at SJTU Student Choir and I have attended 20+ campus and municipal performances and contests in the past three years. In addition, I'm a member of Shanghai Computer Music Association (SCMA). See my performances here.
Algorithm Arrangement via Search and Style Transfer
Accompaniment generation for lead melodies is an interesting topic in computer music. While conventional methods rely on seq2seq models, we propose a novel framework based on rule-based search strategies and style transfer in the disentangled latent space.
This project is a joint application of EC2-VAE, Poly-Disentanglement-VAE, and POP-909 Dataset, three ISMIR works from Music X Lab, NYU Shanghai.
Adversarial Explicitly-Constrained Conditional VAE
One of the key issues of music generation is to control the generation process. EC2-VAE is a chord controlled melody generation model which disentangles the melody into pitch and rhythm. However, the model’s latent pitch encoding is not a chord-invariant representation, and thus cannot induce the network to learn a chord-melody dependency.
This project introduces adversarial training to detach chord cues from pitch, and contributes a novel disentanglement methodology for controllable generation.
Real-Time Music-Driven Dance Generation for Humanoid Robot
This project aims to implement a real-time music-driven robotic dancer, and we propose to generate improvisational dance sequence with Unit Selection Methodology based on two criteria: semantic relevance of dance units, and unit transition stability of the robot.
To render real-time performance, we apply Madmom for beat tracking and synchronize our dance to the music through a feedback loop with PID control.
Video Action Recognition via Cross-Modality Learning
Video Action Recognition is a popular computer vision task usually conducted exclusively on the image stream of the video. This project aims to explore the soundtrack and fuse the visual and auditory information for better recognition accuracy.
By training classification model with mel-spectrogram inputs, and through late fusion with the vision-based model prediction, we acquire a gain of 1.5% in recognition accuracy.
Sound Frequency Analysis for Tightness Detection
For the large-scale electricity generator set, tightness of the slot wedge (part of the generator) is critical to its functioning, but hard to directly detect. We propose a method through tapping at the wedge wall and analyzing the sound frequency to predict tightness.
By feeding the MFCC and log-energy of the waveform to a KNN classifier we gained an detection accuracy of 99.45% on the test set.
Chenzhengyi Liu, Jingwei Zhao (Co-First), Guohang Liu, Yuanning Gao, and Xiaofeng Gao*. "D2EA: Depict the Epidemic Picture of COVID-19." Journal of Shanghai Jiaotong University (Science) 25 (2020): 165-176.
Han-Ying-Ju-Hua Scholarship (Top 2%, 2020-2021)
Zhiyuan Honors Scholarship (Top 5% 2017-2021)
SJTU Undergraduate Excellent Scholoarship (Top 10%, 2018-2021)
Meritorious Winner for the 2019 Interdisciplinary Contest in Modeling (Top 7%, Team Leader)


Money game. Should Red redouble? If redoubled, should White take?
pips Red=122 White=55
(CorrectAnswer= 0/0, ErrorScore= 0)
This is all about knowing reference positions. If both White checkers were closed out this would be a big pass. As a reference (one that most players should know) two closed out checkers plus two White checkers on the ace-point is a very close pass.
Here White may anchor but Red should then execute a trap play to separate the rear checkers. Alternatively White may anchor, roll an ace and get a third checker sent back.
Over the board I would balance the above variations with the fact that White's three home board checkers are on his 2-pt and not his ace-point and come to the conclusion that this will be a borderline decision.
That in fact is the case and XG rates this as close (0.018) pass. However, if Red was a weak player who would make a six-point prime against an anchor rather than executing a trap play then the position becomes a take. So here you have not only to analyse the position but also your opponent.
Here White may anchor but Red should then execute a trap play to separate the rear checkers. Alternatively White may anchor, roll an ace and get a third checker sent back.
Over the board I would balance the above variations with the fact that White's three home board checkers are on his 2-pt and not his ace-point and come to the conclusion that this will be a borderline decision.
That in fact is the case and XG rates this as close (0.018) pass. However, if Red was a weak player who would make a six-point prime against an anchor rather than executing a trap play then the position becomes a take. So here you have not only to analyse the position but also your opponent.
Cube analysis 2-ply cubeless equity +0.504 (Money: +0.502) 0.750 0.004 0.000 - 0.250 0.003 0.000 Cubeful equities: 1. Double, take +0.960 2. Double, pass +1.000 (+0.040) 3. No double +0.819 (-0.141) Proper cube action: Double, take


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--- layout: post status: publish published: true title: Podcast 3.60 - I've Got a Cubby Chubby author: display_name: Corey Fineran login: Corey email<EMAIL_ADDRESS>url: '' author_login: Corey author_email<EMAIL_ADDRESS>wordpress_id: 6616 wordpress_url: http://ivyenvy.com/?p=6616 date: '2012-01-31 22:46:42 +0000' date_gmt: '2012-02-01 04:46:42 +0000' categories: - Podcast tags: - Red Sox - Spring Training - Boys of Spring - Tim Sheridan - Todd Coffey - Trever Miller - Back to the Future II comments: [] ---
Andy and Kurt join Corey through Skype for this episode. Spring Training is right around the corner and Tim Sheridan's blog post over at Boys of Spring gets our juices flowing for Spring baseball. Tim listens to Dale Sveum address some of the youngsters of the organization and we discuss if his statements are worth getting excited about.
The Cubs did make one move in the last week, signing Trever Miller. Andy talks about some of the chatter on message boards about the "trash heap" and Corey will frighten you with naming the player that is the third most similar to Miller. In other pitching news, the Cubs are considering signing Todd Coffey. This potential move gets the green light from Andy.
Then we look at some of the topics that listeners tossed our way, including: Red Sox compensation, the pitching rotation, Back to the Future II and the idea of the Cubs sacrificing things and making massive changes in trade for winning.
We finish the show off by picking a winner for this week's photo caption contest. Congrats to Brenton, you win nothing....er...bragging rights.


Informed consent
You are invited to participate in a research project
aiming to
digitally implement an existing Common-Resource Pool Game (CPR), and extend the underlying Agent Based Model
(ABM),
so that humans can collaborate with scripted agents.
Participators in the study will, through playing an online version of the CPR against three ABMs, help to
evaluate
the developed software artifact.
Through participation in this study you will assist in the development of a new software to facilitate future
research efforts
about mechanisms of social learning, shared management strategies and the relationship between social and
ecological uncertainty.
After this study has concluded, the new software will be available to facilitate furure research efforts.
The online CPR will take about 10 to 15 minutes to complete.
Participation in this survey requires a Facebook account and a login on the Messenger platform.
No personal information is stored in this study. However, all activity will be
completly visible on the Facebook platform, and might be stored by Facebook and/or Messenger.
Participation is completely voluntary. At any time you can choose to exit the conversation in Messenger,
and not complete the CPR.
Please note that you must be at least 18 years old to participate in this study.
By clicking on the "I agree"-button below you leave your informed consent to participate in the study.
For questions about the research project, please contact Andreas Lytter (student at Stockholm University),
<EMAIL_ADDRESS>Please save a copy of this text for future reference.
Regards. Andreas Lytter


TREMORS A film review by Shane R. Burridge Copyright 1995 Shane R. Burridge
1990 96 min
Remember that game you played as a kid, when you tried to walk across, or around a room without touching the floor; or made it a mission to get from one place to another without stepping on any part of a "forbidden" zone? That primal consciousness is, I believe, what makes this film so instantly appealing to its fans.
Kevin Bacon and Fred Ward are two jacks of all trades who own a pickup truck and little else, drifting from one job to another in the small desert town of Perfection. Meanwhile, a visiting seismologist is investigating mysterious disturbances in the ground. As it transpires, these are not caused by earthquakes but earthworms, and big ones at that. Worse, these worms are predators, which detect their prey by the vibrations of their footsteps. It doesn't take long before Bacon, Ward, and co. figure out what is going on, from which point the story becomes the struggle for survival that we've seen in countless monster movies before--with one major twist. Most movies of this type (THE THING, THE BIRDS, NIGHT OF THE LIVING DEAD, et al) invariably hole up the protagonists in a restricted location, which they defend against the attacking hordes. TREMORS turns this on its head: the characters are not confined by the walls of some makeshift sanctuary, but by the vast Nevada desert landscape itself, which they can't even set foot on. In fact, any contact with the ground is a bad move, so they end up ON the buildings, not in them. Most of the second half of the film involves this assorted handful of characters arguing about their predicament and hopscotching from one 'safe' zone to the next.
There is no explanation for the creatures (their origins are discussed arbitrarily in one brief dialogue exchange) and they seem smaller-scale country cousins to the sandworms in DUNE (which are also attracted by vibrations), but the film-makers never make their creations laughable, or thankfully, their characters disposable--there's no stock 'bad guy' amongst them for the scriptwriters to sacrifice to the monsters; and it's fun watching the can-do approach they take to their bizarre situation. Film's highlight for the gun crowd will be the scene in which two survivalist fanatics unload nearly their entire arsenal into one of the attacking creatures. The desert setting, drowsy and stultifying on the surface, is used to good effect, and Bacon and Ward give effortless performances that match this to "Perfection." Snappy pacing and canny writing make this more than just a B picture. Film's major problem was trying to sell the idea of giant earthworms as effective movie monsters. Also with: Michael Gross (from TV's FAMILY TIES), and Ariana Richards as a pogo-stick hopping tyke, who'd later graduate from being terrorized by giant worms to giant dinosaurs in JURASSIC PARK. Some kids have all the luck.
The review above was posted to the
rec.arts.movies.reviews newsgroup (de.rec.film.kritiken for German reviews).
The Internet Movie Database accepts no responsibility for the contents of the
review and has no editorial control. Unless stated otherwise, the copyright
belongs to the author.
Please direct comments/criticisms of the review to relevant newsgroups.
Broken URLs inthe reviews are the responsibility of the author.
The formatting of the review is likely to differ from the original due
to ASCII to HTML conversion.
Related links: index of all rec.arts.movies.reviews reviews


About Me
My name is Helmut, and I'm a Python developer. My passions include Django, performance optimization, code readability, and helping others become better Python developers.
In my spare time I like to spend time with my wife and kids, read, exercise, or watch Formula 1. And in my spare spare time I write more code. ;-)
I currently work as a Python consultant at Tangent Solutions in South Africa.
I am the creator of Sequel Sermon.
Get in touch: me at helmut dot dev.


Musical Timer allows you to generate timers that syncronize their ticks according to musical parameters, like a time signature, a tempo and a beat subdivision resolution.
Check source in https://github.com/colxi/musical-timer
Play
Pause
Stop
TEMPO :
SET
SIGNATURE :
SET
BEAT RESOLUTION FACTOR :
SET
STATUS :
Ellapsed Time :
Beat Subdivisions :
In Sync :
Current Tick :
Current Bar :
Current Beat :
Current SubBeat :


CSPICE_DVCRSS calculates the cross product of the position components of
two state vectors and the time derivative of this cross product.
Given:
s1 a SPICE state(s);
s1 = (r1, dr1 ).
--
dt
[6,n] = size(s1); double = class(s1)
s2 a second SPICE state(s);
s2 = (r2, dr2 ).
--
dt
[6,n] = size(s2); double = class(s2)
An implicit assumption exists that 's1' and 's2' are specified
in the same reference frame. If this is not the case, the numerical
result has no meaning.
the call:
dvcrss = cspice_dvcrss ( s1, s2 )
returns:
dvcrss the cross product(s) associated with the position components
of 's1' and 's2' and the derivative of the cross product(s)
with respect to time.
'dvcrss' returns with the same vectorization measure (N)
as 's1' and 's2'
[6,n] = size(dvcrss); double = class(dvcrss)
Any numerical results shown for this example may differ between
platforms as the results depend on the SPICE kernels used as input
and the machine specific arithmetic implementation.
One can construct non-inertial coordinate frames from apparent
positions of objects or defined directions. However, if one wants
to convert states in this non-inertial frame to states in an inertial
reference frame, the derivatives of the axes of the non-inertial
frame are required.
Define a reference frame with the apparent direction of the sun
as seen from earth as the primary axis (x). Use the earth pole vector
to define with the primary axis a primary plane of the frame.
%
% Load SPK, PCK, and LSK kernels, use a meta kernel for convenience.
%
cspice_furnsh( 'standard.tm' )
%
% Define the earth body-fixed pole vector (z). The pole
% has no velocity in the earth fixed frame "IAU_EARTH."
%
z_earth = [ 0, 0, 1, 0, 0, 0 ]';
%
% Calculate the state transformation between IAU_EARTH and J2000
% at an arbitrary epoch.
%
utc = 'Jan 1, 2009';
et = cspice_str2et( utc );
trans = cspice_sxform( 'IAU_EARTH', 'J2000', et );
%
% Transform the earth pole vector from the IAU_EARTH frame to J2000.
%
z_j2000 = trans * z_earth;
%
% Calculate the apparent state of the sun from earth at the epoch
% 'et' in the J2000 frame.
%
target = 'Sun';
observer = 'Earth';
[state, ltime] = cspice_spkezr( target, et, 'J2000', 'LT+S', observer );
%
% Define the z axis of the new frame as the cross product between
% the apparent direction of the sun and the earth pole. 'z_new' cross
% 'x_new' defines the y axis of the derived frame.
%
x_new = cspice_dvhat( state )
%
% Calculate the z direction in the new reference frame then
% calculate the normal of the vector and derivative of
% the normal to determine the z unit vector.
%
z_new = cspice_dvcrss( state, z_j2000 );
z_new = cspice_dvhat( z_new )
%
% As for z_new, calculate the y direction in the new reference
% frame then calculate the normal of the vector and derivative
% of the normal to determine they unit vector.
%
y_new = cspice_dvcrss( z_new, state );
y_new = cspice_dvhat( y_new )
%
% It's always good form to unload kernels after use,
% particularly in Matlab due to data persistence.
%
cspice_kclear
MATLAB outputs:
x_new =
1.834466375917397e-01
-9.019196633169827e-01
-3.910092736476536e-01
2.024497675152527e-07
3.466010606102513e-08
1.503314202237741e-08
z_new =
-9.798625180410016e-01
-1.996715075815909e-01
8.572038510978363e-04
4.453114222022677e-08
-2.185310696303958e-07
-3.614002123088436e-11
y_new =
7.884654015638601e-02
-3.829780802895584e-01
9.203863390571874e-01
8.238367850215384e-08
3.230941292533659e-08
6.386588623423665e-09
These vectors define the transformation between the new frame and J2000.
- -
| : |
| R : 0 |
M = | ......:......|
| : |
| dRdt : R |
| : |
- -
with
R = [ x_new(1:3): y_new(1:3); z_new(1:3) ]
dRdt = [ x_new(4:6): y_new(4:6); z_new(4:6) ]
In this discussion, the notation
V1 x V2
indicates the cross product of vectors V1 and V2.
With s1 = (r1,v1) and s2 = (r2,v2) then
d
dvcrss = [ r1 x r2 , -- (r1 x r2) ]
dt
For important details concerning this module's function, please refer to
the CSPICE routine dvcrss_c.
MICE.REQ
-Mice Version 1.0.0, 09-NOV-2010, EDW (JPL)
compute the derivative of a cross product
|


--- layout: post title: Bookmarks for August 17th through August 29th tags: - android - angular.js - api - arduino - bitwise - boxcar - burn your idols - conditional loading - debugging - finding - firefox - how-to - html5 - inspiration - javascript - leaks - memory - Mo Farah - mobile - notification - olympics - presidential - push - remote - responsive - tumble status: publish type: post published: true meta: aktt_notify_twitter: 'no' --- These are my links for August 17th through August 29th:


The first step in creating a report is to get data from a data source. Though this process might seem similar to getting data in Power BI, it is different. Power BI paginated reports do not use Power Query when connecting to data sources.
Getting data in a Power BI paginated report does not involve data cleaning steps. In fact, data is not stored in a Power BI paginated report dataset. When data is refreshed on the report, it is retrieved in an unaltered form from the data source, according to the query that was used to retrieve it.
Data can be collected from multiple data sources, including Microsoft Excel, Oracle, SQL Server, and many more. However, after the data has been collected, the different data sources cannot be merged into a single data model. Each source must be used for a different purpose. For instance, data from an Excel source can be used for a chart, while data from SQL Server can be used for a table on a single report. Paginated reports have an expression language that can be used to look up data in different datasets, but it is nothing like Power Query.
Power BI paginated reports can use a dataset from Power BI service. These datasets have used Power Query to clean and alter the data. The difference is that this work was done in Power BI Desktop or SQL Server Data Tools prior to using Power BI Report Builder, which doesn't have that tool in the user interface.
To retrieve data, open Power BI Report Builder. From the Getting Started screen, select New Report. You can choose whether to create a report with a table on it, a chart, or a blank report. For the purposes of this example, a blank report has been selected. These choices create a default visual on your a new report, which can be changed at any time. Next, go to the Report Data window, which is typically on the left side of the tool, though it can be moved around.
Right-click the Data Sources folder and select Add Data Source.
On the General tab, name the data source.
After naming the data source, choose the correct connection string by selecting the Build button.
After you have selected Build, the Connection Properties screen appears. The properties on this screen will be unique for each data source. The following figure is an example of what you might see in the screen. The figure shows the properties of a SQL Server connection that you, the report author, will enter:
You can also enter username and password information on the Connection Properties screen, or you can leave it on the default setting and use your Windows credentials. Select OK again.
You've now created a data source.
Generally, authentication is beyond the scope of this course. Typically, you will receive the connection information from your IT department, application specialist, or the software vendor.
A data source is the connection information to a particular resource, like SQL Server. A dataset is the saved information of the query against the data source, not the data. The data always resides in its original location.
Right-click Datasets in the Report View window and select Add Dataset. Ensure that the correct data source is selected. This action will run the query against the correct data source.
From the window that displays, you can:
Name the query.
Choose whether to use a text command or a stored procedure.
Enter a query into the text box.