| MWLasso | Penalized Moving-Window Lasso Method for Genome-Wide Association Studies |
| MWRidge | Two Stage Moving-Window Ridge Method for Prediction and Estimation |
| mxkssd | Efficient mixed-level k-circulant supersaturated designs |
| MXM | Discovering Multiple, Statistically-Equivalent Signatures |
| mycobacrvR | Integrative immunoinformatics for Mycobacterial diseases in R platform |
| mycor | Automatic Correlation and Regression Test in a Data Frame |
| myepisodes | MyEpisodes RSS/API functions |
| Myrrix | Interface to Myrrix. Myrrix is a complete, real-time, scalable clustering and recommender system, evolved from Apache Mahout |
| Myrrixjars | External jars required for package Myrrix |
| myTAI | Evolutionary Transcriptomics Analyses |
| mztwinreg | Regression Models for Monozygotic Twin Data |
| nabor | Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions |
| NADA | Nondetects and Data Analysis for Environmental Data |
| nadiv | (Non)Additive Genetic Relatedness Matrices |
| NAEPprimer | The NAEP Primer |
| naivebayes | High Performance Implementation of the Naive Bayes Algorithm |
| NAM | Nested Association Mapping |
| namespace | Provide namespace managment functions not (yet) present in base R |
| nanop | Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function |
| NanoStringNorm | Normalize NanoString miRNA and mRNA Data |
| nanotime | Nanosecond-Resolution Time for R |
| NAPPA | Performs the Processing and Normalisation of Nanostring miRNA and mRNA Data |
| naptime | A Flexible and Robust Sys.sleep() Replacement |
| narray | Subset- And Name-Aware Array Utility Functions |
| nasadata | Interface to Various NASA API's |
| nasaweather | Collection of datasets from the ASA 2006 data expo |
| nat | NeuroAnatomy Toolbox for Analysis of 3D Image Data |
| nat.nblast | NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering |
| nat.templatebrains | NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains |
| nat.utils | File System Utility Functions for 'NeuroAnatomy Toolbox' |
| natserv | 'NatureServe' Interface |
| naturalsort | Natural Ordering |
| nauf | Regression with NA Values in Unordered Factors |
| NB | Maximum Likelihood method in estimating effective population size from genetic data |
| NB.MClust | Negative Binomial Model-Based Clustering |
| nbc4va | Bayes Classifier for Verbal Autopsy Data |
| NbClust | Determining the Best Number of Clusters in a Data Set |
| nbconvertR | Vignette Engine Wrapping IPython Notebooks |
| NBDdirichlet | NBD-Dirichlet Model of Consumer Buying Behavior for Marketing Research |
| nbpMatching | Functions for Optimal Non-Bipartite Matching |
| NBPSeq | Negative Binomial Models for RNA-Sequencing Data |
| NCA | Necessary Condition Analysis |
| nCal | Nonlinear Calibration |
| ncappc | NCA Calculation and Population PK Model Diagnosis |
| ncar | Noncompartmental Analysis for Pharmacokinetic Data for Report |
| ncbit | retrieve and build NBCI taxonomic data |
| ncdf.tools | Easier 'NetCDF' File Handling |
| ncdf4 | Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files |
| ncdf4.helpers | Helper functions for use with the ncdf4 package |
| ncdump | Extract Metadata from 'NetCDF' Files as Data Frames |
| nCDunnett | Noncentral Dunnett's Test Distribution |
| ncf | Spatial Nonparametric Covariance Functions |
| ncg | Computes the noncentral gamma function |
| NCmisc | Miscellaneous Functions for Creating Adaptive Functions and Scripts |
| ncvreg | Regularization Paths for SCAD and MCP Penalized Regression Models |
| ndjson | Wicked-Fast Streaming 'JSON' ('ndjson') Reader |
| ndl | Naive Discriminative Learning |
| ndtv | Network Dynamic Temporal Visualizations |
| NEArender | Network Enrichment Analysis |
| nearfar | Near-Far Matching |
| neariso | Near-Isotonic Regression |
| neat | Efficient Network Enrichment Analysis Test |
| NeatMap | Non-clustered heatmap alternatives |
| needs | Attaches and Installs Packages |
| needy | needy |
| NEff | Calculating Effective Sizes Based on Known Demographic Parameters of a Population |
| NegBinBetaBinreg | Negative Binomial and Beta Binomial Bayesian Regression Models |
| negenes | Estimating the Number of Essential Genes in a Genome |
| neighbr | Classification, Regression, Clustering with K Nearest Neighbors |
| neldermead | R port of the Scilab neldermead module |
| neotoma | Access to the Neotoma Paleoecological Database Through R |
| nephro | Utilities for Nephrology |
| NEpiC | Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals |
| NestedCategBayesImpute | Modeling and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations |
| NestedCohort | Survival Analysis for Cohorts with Missing Covariate Information |
| nestedRanksTest | Mann-Whitney-Wilcoxon Test for Nested Ranks |
| net.security | Security Standards Data Sets |
| netassoc | Inference of Species Associations from Co-Occurrence Data |
| netClass | netClass: An R Package for Network-Based Biomarker Discovery |
| NetCluster | Clustering for networks |
| netcoh | Statistical Modeling with Network Cohesion |
| netCoin | Interactive Networks with R |
| NetComp | Network Generation and Comparison |
| NetData | Network Data for McFarland's SNA R labs |
| netdiffuseR | Analysis of Diffusion and Contagion Processes on Networks |
| netgen | Network Generator for Combinatorial Graph Problems |
| netgsa | Network-Based Gene Set Analysis |
| NetIndices | Estimating network indices, including trophic structure of foodwebs in R |
| netmeta | Network Meta-Analysis using Frequentist Methods |
| NetOrigin | Origin Estimation for Propagation Processes on Complex Networks |
| NetPreProc | Network Pre-Processing and Normalization |
| NetRep | Permutation Testing Network Module Preservation Across Datasets |
| nets | Network Estimation for Time Series |
| NetSim | A Social Networks Simulation Tool in R |
| NetSwan | Network Strengths and Weaknesses Analysis |
| nettools | A Network Comparison Framework |
| NetWeaver | Graphic Presentation of Complex Genomic and Network Data Analysis |
| network | Classes for Relational Data |
| NetworkChange | Bayesian Package for Network Changepoint Analysis |
| NetworkComparisonTest | Statistical Comparison of Two Networks Based on Three Invariance Measures |
| networkD3 | D3 JavaScript Network Graphs from R |
| networkDynamic | Dynamic Extensions for Network Objects |
| networkDynamicData | Dynamic (Longitudinal) Network Datasets |
| NetworkInference | Inferring Latent Diffusion Networks |
| networkreporting | Tools for using Network Reporting Estimators |
| NetworkRiskMeasures | Risk Measures for (Financial) Networks |
| networksis | Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling |
| networkTomography | Tools for network tomography |
| networktools | Assorted Tools for Identifying Important Nodes in Networks (Impact, Expected Influence) |
| neural | Neural Networks |
| neuralnet | Training of Neural Networks |
| NeuralNetTools | Visualization and Analysis Tools for Neural Networks |
| neurobase | 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects |
| neuroblastoma | Neuroblastoma copy number profiles |
| neurohcp | Human Connectome Project Interface |
| neuroim | Data Structures and Handling for Neuroimaging Data |
| neuropsychology | Toolbox for Psychologists, Neuropsychologists and Neuroscientists |
| neuRosim | Functions to Generate fMRI Data Including Activated Data, Noise Data and Resting State Data |
| Newdistns | Computes Pdf, Cdf, Quantile and Random Numbers, Measures of Inference for 19 General Families of Distributions |
| nFactors | Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test |
| nFCA | Numerical Formal Concept Analysis for Systematic Clustering |
| NFP | Network Fingerprint Framework in R |
| ngram | Fast n-Gram 'Tokenization' |
| ngramrr | A Simple General Purpose N-Gram Tokenizer |
| ngspatial | Fitting the Centered Autologistic and Sparse Spatial Generalized Linear Mixed Models for Areal Data |
| NHANES | Data from the US National Health and Nutrition Examination Study |
| nhanesA | NHANES Data Retrieval |
| NHEMOtree | Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification |
| NHLData | Scores for Every Season Since the Founding of the NHL in 1917 |
| nhlscrapr | Compiling the NHL Real Time Scoring System Database for easy use in R |
| NHMM | Bayesian Non-Homogenous Markov and Mixture Models (Multiple Time Series) |
| NHMSAR | Non-Homogeneous Markov Switching Autoregressive Models |
| NHPoisson | Modelling and Validation of Non Homogeneous Poisson Processes |
| nhstplot | Plot Null Hypothesis Significance Tests |
| nice | Get or Set UNIX Niceness |
| nicheROVER | (Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches |
| NightDay | Night and Day Boundary Plot Funtion |
| nima | Nima Hejazi's Miscellaneous R Code |
| nimble | Flexible BUGS-Compatible System for Hierarchical Statistical Modeling and Algorithm Development |
| Nippon | Japanese Utility Functions and Data |
| NIPTeR | Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing |
| NISTnls | Nonlinear least squares examples from NIST |
| NISTunits | Fundamental Physical Constants and Unit Conversions from NIST |
| nivm | Noninferiority Tests with Variable Margins |
| NlcOptim | Solve Nonlinear Optimization with Nonlinear Constraints |
| nleqslv | Solve Systems of Nonlinear Equations |
| nlme | Linear and Nonlinear Mixed Effects Models |
| nlmeODE | Non-linear mixed-effects modelling in nlme using differential equations |
| nlmeU | Datasets and utility functions enhancing functionality of nlme package |
| nlmrt | Functions for Nonlinear Least Squares Solutions |
| nlnet | Nonlinear Network Reconstruction and Clustering Based on DCOL (Distance Based on Conditional Ordered List) |
| nloptr | R interface to NLopt |
| NLP | Natural Language Processing Infrastructure |
| NLPutils | Natural Language Processing Utilities |
| nlreg | Higher Order Inference for Nonlinear Heteroscedastic Models |
| NLRoot | searching for the root of equation |
| nlrr | Non-Linear Relative Risk Estimation and Plotting |
| nls2 | Non-linear regression with brute force |
| nlsem | Fitting Structural Equation Mixture Models |
| nlshelper | Convenient Functions for Non-Linear Regression |
| nlshrink | Non-Linear Shrinkage Estimation of Population Eigenvalues and Covariance Matrices |
| nlsMicrobio | Nonlinear regression in predictive microbiology |
| nlsmsn | Fitting nonlinear models with scale mixture of skew-normal distributions |
| nlsr | Functions for Nonlinear Least Squares Solutions |
| nlstimedist | Non-Linear Model Fitting of Time Distribution of Biological Phenomena |
| nlstools | Tools for Nonlinear Regression Analysis |
| NlsyLinks | Utilities and Kinship Information for Research with the NLSY |
| nlt | A nondecimated lifting transform for signal denoising |
| nlts | (non)linear time series analysis |
| nLTT | Calculate the NLTT Statistic |
| nlWaldTest | Wald Test of Nonlinear Restrictions and Nonlinear CI |
| NMF | Algorithms and Framework for Nonnegative Matrix Factorization (NMF) |
| nmfgpu4R | Non-Negative Matrix Factorization (NMF) using CUDA |
| NMFN | Non-negative Matrix Factorization |
| NMI | Normalized Mutual Information of Community Structure in Network |
| NMOF | Numerical Methods and Optimization in Finance |
| nmw | Understanding Nonlinear Mixed Effects Modeling for Population Pharmacokinetics |
| nnet | Feed-Forward Neural Networks and Multinomial Log-Linear Models |
| nnetpredint | Prediction Intervals of Multi-Layer Neural Networks |
| nnlasso | Non-Negative Lasso and Elastic Net Penalized Generalized Linear Models |
| NNLM | Fast and Versatile Non-Negative Matrix Factorization |
| nnls | The Lawson-Hanson algorithm for non-negative least squares (NNLS) |
| NNS | Nonlinear Nonparametric Statistics |
| NNTbiomarker | Calculate Design Parameters for Biomarker Validation Studies |
| nodeHarvest | Node Harvest for Regression and Classification |
| nodiv | Compares the Distribution of Sister Clades Through a Phylogeny |
| noia | Implementation of the Natural and Orthogonal InterAction (NOIA) model |
| noise | Estimation of Intrinsic and Extrinsic Noise from Single-Cell Data |
| NoiseFiltersR | Label Noise Filters for Data Preprocessing in Classification |
| nomclust | Hierarchical Nominal Clustering Package |
| NominalLogisticBiplot | Biplot representations of categorical data |
| nomogramEx | Extract Equations from a Nomogram |
| noncensus | U.S. Census Regional and Demographic Data |
| NonCompart | Noncompartmental Analysis for Pharmacokinetic Data |
| noncompliance | Causal Inference in the Presence of Treatment Noncompliance Under the Binary Instrumental Variable Model |
| nonlinearTseries | Nonlinear Time Series Analysis |
| nonmem2R | Loading NONMEM Output Files and Simulate with Parameter Uncertainty |
| nonmemica | Create and Evaluate NONMEM Models in a Project Context |
| nonnest2 | Tests of Non-Nested Models |
| nonpar | A Collection of Nonparametric Hypothesis Tests |
| nonparaeff | Nonparametric Methods for Measuring Efficiency and Productivity |
| NonpModelCheck | Model Checking and Variable Selection in Nonparametric Regression |
| nonrandom | Stratification and matching by the propensity score |
| nontarget | Detecting Isotope, Adduct and Homologue Relations in LC-MS Data |
| nontargetData | Quantized simulation data of isotope pattern centroids |
| nopaco | Non-Parametric Concordance Coefficient |
| nopp | Nash Optimal Party Positions |
| nor1mix | Normal (1-d) Mixture Models (S3 Classes and Methods) |
| nordklimdata1 | Dataset for Climate Analysis with Data from the Nordic Region |
| norm | Analysis of multivariate normal datasets with missing values |
| norm2 | Analysis of Incomplete Multivariate Data under a Normal Model |
| NORMA | Builds General Noise SVRs |
| NormalGamma | Normal-gamma convolution model |
| NormalLaplace | The Normal Laplace Distribution |
| normalp | Routines for Exponential Power Distribution |
| normalr | Normalisation of Multiple Variables in Large-Scale Datasets |
| NormPsy | Normalisation of Psychometric Tests |
| NORMT3 | Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t |
| normtest | Tests for Normality |
| normwhn.test | Normality and White Noise Testing |
| NORRRM | Geochemical Toolkit for R |
| NORTARA | Generation of Multivariate Data with Arbitrary Marginals |
| nortest | Tests for Normality |
| nortestARMA | Neyman Smooth Tests of Normality for the Errors of ARMA Models |
| nose | nose Package for R |
| NostalgiR | Advanced Text-Based Plots |
| not | Narrowest-Over-Threshold Change-Point Detection |
| notifyme | Send Alerts to your Cellphone and Phillips Hue Lights |
| notifyR | Send push notifications to your smartphone via pushover.net (ACCOUNT REQUIRED!) |
| novelist | NOVEL Integration of the Sample and Thresholded (NOVELIST) Correlation and Covariance Estimators |
| noweb | Noweb system for R |
| Nozzle.R1 | Nozzle Reports |
| np | Nonparametric Kernel Smoothing Methods for Mixed Data Types |
| nparACT | Non-Parametric Measures of Actigraphy Data |
| nparcomp | Multiple Comparisons and Simultaneous Confidence Intervals |
| nparLD | Nonparametric Analysis of Longitudinal Data in Factorial Experiments |
| nparsurv | Nonparametric Tests for Main Effects, Simple Effects and Interaction Effect in a Factorial Design with Censored Data |
| NPBayesImpute | Non-Parametric Bayesian Multiple Imputation for Categorical Data |
| npbr | Nonparametric Boundary Regression |
| NPC | Nonparametric Combination of Hypothesis Tests |
| NPCD | Nonparametric Methods for Cognitive Diagnosis |
| NPCirc | Nonparametric Circular Methods |
| npcopTest | Non Parametric Test for Detecting Changes in the Copula |
| npcp | Some Nonparametric Tests for Change-Point Detection in Possibly Multivariate Observations |
| npde | Normalised prediction distribution errors for nonlinear mixed-effect models |
| NPflow | Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data |
| NPHMC | Sample Size Calculation for the Proportional Hazards Mixture Cure Model |
| npIntFactRep | Nonparametric Interaction Tests for Factorial Designs with Repeated Measures |
| nplplot | Plotting linkage and association results |
| nplr | N-Parameter Logistic Regression |
| NPMLEcmprsk | Type-Specific Failure Rate and Hazard Rate on Competing Risks Data |
| npmlreg | Nonparametric maximum likelihood estimation for random effect models |
| NPMOD | Non Parametric Module |
| NPMPM | tertiary probabilistic model in predictive microbiology for use in food manufacture |
| npmr | Nuclear Penalized Multinomial Regression |
| npmv | Nonparametric Comparison of Multivariate Samples |
| NPMVCP | Nonparametric Multivariate Change Point Model |
| nppbib | Nonparametric Partially-Balanced Incomplete Block Design Analysis |
| npregfast | Nonparametric Estimation of Regression Models with Factor-by-Curve Interactions |
| nprobust | Robust Data-Driven Statistical Inference for Local Polynomial Regression and Kernel Density Estimation |
| nproc | Neyman-Pearson Receiver Operating Characteristics |
| npROCRegression | Kernel-Based Nonparametric ROC Regression Modelling |
| NPS | Convenience Functions and Tests for Working With the Net Promoter Score (NPS) |
| npsf | Nonparametric and Stochastic Efficiency and Productivity Analysis |
| NPsimex | Nonparametric Smoothing for contaminated data using Simulation-Extrapolation |
| npsm | Package for Nonparametric Statistical Methods using R |
| npsp | Nonparametric Spatial Statistics |
| npst | Generalization of Hewitt's Seasonality Test |
| npsurv | Non-Parametric Survival Analysis |
| nricens | NRI for Risk Prediction Models with Time to Event and Binary Response Data |
| NSA | Post-normalization of total copy numbers |
| nscancor | Non-Negative and Sparse CCA |
| NScluster | Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models |
| nse | Numerical Standard Errors Computation in R |
| nsga2R | Elitist Non-dominated Sorting Genetic Algorithm based on R |
| nsgp | Non-Stationary Gaussian Process Regression |
| NSM3 | Functions and Datasets to Accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third Edition |
| nspmix | Nonparametric and Semiparametric Mixture Estimation |
| nsprcomp | Non-Negative and Sparse PCA |
| nsRFA | Non-supervised Regional Frequency Analysis |
| NSUM | Network Scale Up Method |
| nucim | Nucleome Imaging Toolbox |
| NUCOMBog | NUtrient Cycling and COMpetition Model Undisturbed Open Bog Ecosystems in a Temperate to Sub-Boreal Climate |
| nullabor | Tools for Graphical Inference |
| numbers | Number-Theoretic Functions |
| numDeriv | Accurate Numerical Derivatives |
| numGen | Number Series Generator |
| numKM | Create a Kaplan-Meier Plot with Numbers at Risk |
| numOSL | Numeric Routines for Optically Stimulated Luminescence Dating |
| nutshell | Data for "R in a Nutshell" |
| nutshell.audioscrobbler | Audioscrobbler data for "R in a Nutshell" |
| nutshell.bbdb | Baseball Database for "R in a Nutshell" |
| nws | R functions for NetWorkSpaces and Sleigh |
| nycflights13 | Flights that Departed NYC in 2013 |
| nzelect | New Zealand Election Data |
| nzpullover | Driving Offences in New Zealand Between 2009 and 2016 |
| oaColors | OpenAnalytics Colors Package |
| oai | General Purpose 'Oai-PMH' Services Client |
| OAIHarvester | Harvest Metadata Using OAI-PMH v2.0 |
| oapackage | Orthogonal Array Package |
| oaPlots | OpenAnalytics Plots Package |
| Oarray | Arrays with arbitrary offsets |
| oasis | Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI) |
| OasisR | Outright Tool for the Analysis of Spatial Inequalities and Segregation |
| oaxaca | Blinder-Oaxaca Decomposition |
| obAnalytics | Limit Order Book Analytics |
| objectProperties | A factory of self-describing properties |
| objectSignals | objectSignals |
| obliclus | Cluster-based factor rotation |
| obliqueRF | Oblique Random Forests from Recursive Linear Model Splits |
| obs.agree | An R package to assess agreement between observers |
| observer | Observe and Check your Data |
| OBsMD | Objective Bayesian Model Discrimination in Follow-Up Designs |
| obsSens | Sensitivity analysis for Observational studies |
| oc | OC Roll Call Analysis Software |
| OCA | Optimal Capital Allocations |
| occ | Estimates PET neuroreceptor occupancies |
| oce | Analysis of Oceanographic Data |
| oceanmap | A Plotting Toolbox for 2D Oceanographic Data |
| OceanView | Visualisation of Oceanographic Data and Model Output |
| ocedata | Oceanographic Datasets for Oce |
| ockc | Order Constrained Solutions in k-Means Clustering |
| ocomposition | Regression for Rank-Indexed Compositional Data |
| OData | R Helper for OData Web Services |
| ODB | Open Document Databases (.odb) management |
| odbc | Connect to ODBC Compatible Databases (using the DBI Interface) |
| odds.converter | Betting Odds Conversion |
| oddsratio | Odds Ratio Calculation for GAM(M)s & GLM(M)s |
| odeintr | C++ ODE Solvers Compiled on-Demand |
| odfWeave | Sweave processing of Open Document Format (ODF) files |
| odfWeave.survey | Support for odfWeave on the survey package |
| ODMconverter | Tools to Convert ODM Files |
| oec | Use the Observatory of Economic Complexity's API in R |
| OECD | Search and Extract Data from the OECD |
| oem | Orthogonalizing EM |
| officer | Manipulation of Microsoft Word and PowerPoint Documents |
| oglmx | Estimation of Ordered Generalized Linear Models |
| Ohmage | R Client for Ohmage 2 server |
| OIdata | Data sets and supplements (OpenIntro) |
| oii | Crosstab and Statistical Tests for OII MSc Stats Course |
| OIsurv | Survival analysis supplement to OpenIntro guide |
| OjaNP | Multivariate Methods Based on the Oja Median and Related Concepts |
| okcupiddata | OkCupid Profile Data for Introductory Statistics and Data Science Courses |
| okmesonet | Retrieve Oklahoma Mesonet climatological data |
| olctools | Open Location Code Handling in R |
| OligoSpecificitySystem | Oligo Specificity System |
| OLScurve | OLS growth curve trajectories |
| olsrr | Tools for Teaching and Learning OLS Regression |
| omd | filter the molecular descriptors for QSAR |
| OmicKriging | Poly-Omic Prediction of Complex TRaits |
| omics | '–omics' Data Analysis Toolbox |
| OmicsPLS | Perform Two-Way Orthogonal Partial Least Squares |
| ompr | Model and Solve Mixed Integer Linear Programs |
| ompr.roi | A Solver for 'ompr' that Uses the R Optimization Infrastructure ('ROI') |
| oncomodel | Maximum likelihood tree models for oncogenesis |
| Oncotree | Estimating oncogenetic trees |
| OneArmPhaseTwoStudy | Planing, Monitoring and Evaluating Oncological Phase 2 Studies |
| onehot | Fast Onehot Encoding for Data.frames |
| onemap | Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses |
| OneR | One Rule Machine Learning Classification Algorithm with Enhancements |
| ONETr | Efficient Authenticated Interaction with the O*NET API |
| OneTwoSamples | Deal with one and two (normal) samples |
| onewaytests | One-Way Tests in Independent Groups Designs |
| onion | octonions and quaternions |
| onlinePCA | Online Principal Component Analysis |
| onls | Orthogonal Nonlinear Least-Squares Regression |
| ontologyIndex | Functions for Reading Ontologies into R |
| ontologyPlot | Functions for Visualising Sets of Ontological Terms |
| ontologySimilarity | Functions for Calculating Ontological Similarities |
| OOBCurve | Out of Bag Learning Curve |
| OOmisc | Ozgur-Ozlem Miscellaneous |
| OOR | Optimistic Optimization in R |
| OpasnetUtils | Opasnet Modelling Environment Utility Functions |
| OPDOE | OPtimal Design Of Experiments |
| opefimor | Option Pricing and Estimation of Financial Models in R |
| openadds | Client to Access 'Openaddresses' Data |
| openair | Tools for the Analysis of Air Pollution Data |
| opencage | Interface to the OpenCage API |
| OpenCL | Interface allowing R to use OpenCL |
| opencpu | Producing and Reproducing Results |
| openEBGM | EBGM Scores for Mining Large Contingency Tables |
| OpenImageR | An Image Processing Toolkit |
| openintro | OpenIntro data sets and supplemental functions |
| OpenML | Exploring Machine Learning Better, Together |
| OpenMPController | Control number of OpenMP threads dynamically |
| OpenMx | Extended Structural Equation Modelling |
| openNLP | Apache OpenNLP Tools Interface |
| openNLPdata | Apache OpenNLP Jars and Basic English Language Models |
| OpenRepGrid | Tools to Analyse Repertory Grid Data |
| openssl | Toolkit for Encryption, Signatures and Certificates Based on OpenSSL |
| OpenStreetMap | Access to Open Street Map Raster Images |
| opentraj | Tools for Creating and Analysing Air Trajectory Data |
| openVA | Automated Method for Verbal Autopsy |
| openxlsx | Read, Write and Edit XLSX Files |
| opera | Online Prediction by Expert Aggregation |
| operator.tools | Utilities for Working with R's Operators |
| operators | Additional Binary Operators |
| OPI | Open Perimetry Interface |
| Opportunistic | Broadcasts, Transmissions and Receptions in an Opportunistic Network |
| ops | Optimal Power Space Transformation |
| optAUC | Optimal Combinations of Diagnostic Tests Based on AUC |
| optband | 'surv' Object Confidence Bands Optimized by Area |
| optbdmaeAT | Optimal Block Designs for Two-Colour cDNA Microarray Experiments |
| optBiomarker | Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules |
| optCluster | Determine Optimal Clustering Algorithm and Number of Clusters |
| optDesignSlopeInt | Optimal Designs for Estimating the Slope Divided by the Intercept |
| optextras | Tools to Support Optimization Possibly with Bounds and Masks |
| OptGS | Near-Optimal and Balanced Group-Sequential Designs for Clinical Trials with Continuous Outcomes |
| OptHedging | Estimation of value and hedging strategy of call and put options |
| opticut | Likelihood Based Optimal Partitioning for Indicator Species Analysis |
| optifunset | Set Options if Unset |
| optigrab | Command-Line Parsing for an R World |
| optim.functions | Standard Benchmark Optimization Functions |
| OptimalCutpoints | Computing optimal cutpoints in diagnostic tests |
| OptimalDesign | Algorithms for D-, A-, and IV-Optimal Designs |
| OptimaRegion | Confidence Regions for Optima |
| optimbase | R port of the Scilab optimbase module |
| optimization | Flexible Optimization |
| optimr | A Replacement and Extension of the 'optim' Function |
| optimsimplex | R port of the Scilab optimsimplex module |
| optimus | Model Based Diagnostics for Multivariate Cluster Analysis |
| optimx | A Replacement and Extension of the optim() Function |
| OptInterim | Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint |
| OptionPricing | Option Pricing with Efficient Simulation Algorithms |
| optiRum | Financial Functions & More |
| optiscale | Optimal scaling |
| optiSel | Optimum Contribution Selection and Population Genetics |
| optismixture | Optimal Mixture Weights in Multiple Importance Sampling |
| optmatch | Functions for Optimal Matching |
| optparse | Command Line Option Parser |
| optpart | Optimal Partitioning of Similarity Relations |
| optR | Optimization Toolbox for Solving Linear Systems |
| optrcdmaeAT | Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments |
| optrees | Optimal Trees in Weighted Graphs |
| opusminer | OPUS Miner Algorithm for Filtered Top-k Association Discovery |
| ora | Convenient Tools for Working with Oracle Databases |
| orca | Computation of Graphlet Orbit Counts in Sparse Graphs |
| ORCI | Several confidence intervals for the odds ratio |
| orclus | ORCLUS subspace clustering |
| ORCME | Order Restricted Clustering for Microarray Experiments |
| orcutt | Estimate Procedure in Case of First Order Autocorrelation |
| ordBTL | Modelling comparison data with ordinal response |
| ordcrm | Likelihood-Based Continual Reassessment Method (CRM) Dose Finding Designs |
| ordDisp | Separating Location and Dispersion in Ordinal Regression Models |
| orddom | Ordinal Dominance Statistics |
| ORDER2PARENT | Estimate parent distributions with data of several order statistics |
| orderbook | Orderbook visualization/Charting software |
| orderedLasso | Ordered Lasso and Time-lag Sparse Regression |
| OrdFacReg | Least Squares, Logistic, and Cox-Regression with Ordered Predictors |
| ordiBreadth | Ordinated Diet Breadth |
| ordinal | Regression Models for Ordinal Data |
| ordinalCont | Ordinal Regression Analysis for Continuous Scales |
| ordinalForest | Ordinal Forests: Prediction and Class Width Inference with Ordinal Target Variables |
| ordinalgmifs | Ordinal Regression for High-Dimensional Data |
| OrdinalLogisticBiplot | Biplot representations of ordinal variables |
| ordinalNet | Penalized Ordinal Regression |
| OrdLogReg | Ordinal Logic Regression |
| OrdMonReg | Compute least squares estimates of one bounded or two ordered isotonic regression curves |
| OrdNor | Concurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions |
| ordPens | Selection and/or Smoothing of Ordinal Predictors |
| ore | An R Interface to the Onigmo Regular Expression Library |
| ores | Connector to the Objective Revision Evaluation Service (ORES) |
| OrgMassSpecR | Organic Mass Spectrometry |
| orgR | Analyse Text Files Created by Emacs' Org mode |
| orgutils | Helper Functions for Org Files |
| ORIClust | Order-restricted Information Criterion-based Clustering Algorithm |
| orientlib | Support for orientation data |
| OriGen | Fast Spatial Ancestry via Flexible Allele Frequency Surfaces |
| originr | Fetch Species Origin Data from the Web |
| orloca | The package deals with Operations Research LOCational Analysis models |
| orloca.es | Spanish version of orloca package |
| ORMDR | ORMDR |
| oro.dicom | Rigorous - DICOM Input / Output |
| oro.nifti | Rigorous - NIfTI + ANALYZE + AFNI : Input / Output |
| oro.pet | Rigorous - Positron Emission Tomography |
| orQA | Order Restricted Assessment Of Microarray Titration Experiments |
| orsifronts | Southern Ocean Frontal Distributions (Orsi) |
| orsk | Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information |
| orthogonalsplinebasis | Orthogonal B-Spline Basis Functions |
| OrthoPanels | Dynamic Panel Models with Orthogonal Reparameterization of Fixed Effects |
| orthopolynom | Collection of functions for orthogonal and orthonormal polynomials |
| osc | Orthodromic Spatial Clustering |
| OSCV | One-Sided Cross-Validation |
| osd | Orthogonal Signal Deconvolution for Spectra Deconvolution in GC-MS and GCxGC-MS Data |
| osDesign | Design and analysis of observational studies |
| osi | Open Source Initiative API Connector |
| osmar | OpenStreetMap and R |
| osmdata | Import OpenStreetMap Data as Simple Features or Spatial Objects |
| osmplotr | Customisable Images of OpenStreetMap Data |
| OSMscale | Add a Scale Bar to 'OpenStreetMap' Plots |
| osrm | Interface Between R and the OpenStreetMap-Based Routing Service OSRM |
| OTE | Optimal Trees Ensembles for Regression, Classification and Class Membership Probability Estimation |
| otinference | Inference for Optimal Transport |
| otrimle | Robust Model-Based Clustering |
| OTRselect | Variable Selection for Optimal Treatment Decision |
| OTUtable | North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions |
| ouch | Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses |
| outbreaker | Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data |
| outbreaks | A Collection of Disease Outbreak Data |
| OutbreakTools | Basic Tools for the Analysis of Disease Outbreaks |
| OutlierDC | Outlier Detection using quantile regression for Censored Data |
| OutlierDM | Outlier Detection for Multi-replicated High-throughput Data |
| outliers | Tests for outliers |
| OutrankingTools | Functions for Solving Multiple-criteria Decision-making Problems |
| outreg | Regression Table for Publication |
| OUwie | Analysis of Evolutionary Rates in an OU Framework |
| overlap | Estimates of Coefficient of Overlapping for Animal Activity Patterns |
| overlapping | Estimation of Overlapping in Empirical Distributions |
| owmr | OpenWeatherMap API Wrapper |
| oXim | Oxycline Index from Matrix Echograms |
| OxyBS | Processing of Oxy-Bisulfite Microarray Data |
| oz | Plot the Australian Coastline and States |
| P2C2M | Posterior Predictive Checks of Coalescent Models |
| p2distance | Welfare's Synthetic Indicator |
| p3state.msm | Analyzing survival data |
| pa | Performance Attribution for Equity Portfolios |
| PAactivPAL | Summarize Daily Physical Activity from 'activPAL' Accelerometer Data |
| PabonLasso | Pabon Lasso Graphs and Comparing Situations of a Unit in Two Different Times |
| PAC | Partition-Assisted Clustering and Multiple Alignments of Networks |
| PACBO | Clustering Online Datasets |
| pacbpred | PAC-Bayesian Estimation and Prediction in Sparse Additive Models |
| pack | Convert values to/from raw vectors |
| packagedocs | Build Website of Package Documentation |
| packagetrackr | Track R Package Downloads from RStudio's CRAN Mirror |
| packcircles | Circle Packing |
| packClassic | Toy example of Pack Classic |
| packHV | A few Useful Functions for Statisticians |
| packrat | A Dependency Management System for Projects and their R Package Dependencies |
| packS4 | Toy Example of S4 Package |
| pacman | Package Management Tool |
| paco | Procrustes Application to Cophylogenetic Analysis |
| pacotest | Testing for Partial Copulas and the Simplifying Assumption in Vine Copulas |
| pact | Predictive Analysis of Clinical Trials |
| Pade | Padé Approximant Coefficients |
| padr | Quickly Get Datetime Data Ready for Analysis |
| paf | Attributable Fraction Function for Censored Survival Data |
| pafdR | Book Companion for Processing and Analyzing Financial Data with R |
| PAFit | Generative Mechanism Estimation in Temporal Complex Networks |
| pagenum | Put Page Numbers on Graphics |
| pageviews | An API Client for Wikimedia Traffic Data |
| PAGI | The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways |
| PAGWAS | Pathway Analysis Methods for Genomewide Association Data |
| paintmap | Plotting Paintmaps |
| pairedCI | Confidence intervals for the ratio of locations and for the ratio of scales of two paired samples |
| PairedData | Paired Data Analysis |
| pairheatmap | A tool for comparing heatmaps |
| pairsD3 | D3 Scatterplot Matrices |
| PairViz | Visualization using Eulerian tours and Hamiltonian decompositions |
| pairwise | Rasch Model Parameters by Pairwise Algorithm |
| pairwiseCI | Confidence Intervals for Two Sample Comparisons |
| PairwiseD | Pairing Up Units and Vectors in Panel Data Setting |
| palaeoSig | Significance Tests for Palaeoenvironmental Reconstructions |
| paleobioDB | Download and Process Data from the Paleobiology Database |
| paleofire | Analysis of Charcoal Records from the Global Charcoal Database |
| paleoMAS | Paleoecological Analysis |
| paleomorph | Geometric Morphometric Tools for Paleobiology |
| paleotree | Paleontological and Phylogenetic Analyses of Evolution |
| paleoTS | Analyze Paleontological Time-Series |
| palettetown | Use Pokemon Inspired Colour Palettes |
| palinsol | Insolation for Palaeoclimate Studies |
| palm | Fitting Point Process Models via the Palm Likelihood |
| palr | Colour Palettes for Data |
| pals | Color Palettes, Colormaps, and Tools to Evaluate Them |
| pamctdp | Principal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns |
| pamm | Power Analysis for Random Effects in Mixed Models |
| pampe | Implementation of the Panel Data Approach Method for Program Evaluation |
| pamr | Pam: prediction analysis for microarrays |
| pan | Multiple Imputation for Multivariate Panel or Clustered Data |
| pAnalysis | Benchmarking and Rescaling R2 using Noise Percentile Analysis |
| PANDA | Preferential Attachment Based Common Neighbor Distribution Derived Functional Associations |
| pander | An R Pandoc Writer |
| pandocfilters | Pandoc Filters for R |
| panelaggregation | Aggregate Longitudinal Survey Data |
| panelAR | Estimation of Linear AR(1) Panel Data Models with Cross-Sectional Heteroskedasticity and/or Correlation |
| PanelCount | Random Effects and/or Sample Selection Models for Panel Count Data |
| Paneldata | Linear models for panel data |
| pangaear | Client for the 'Pangaea' Database |
| PANICr | PANIC Tests of Nonstationarity |
| PanJen | A Semi-Parametric Test for Specifying Functional Form |
| papayar | View Medical Research Images using the Papaya JavaScript Library |
| papeR | A Toolbox for Writing Pretty Papers and Reports |
| paperplanes | Distance Recordings from a Paper Plane Folding/Flying Experiment |
| ParallelForest | Random Forest Classification with Parallel Computing |
| parallelize.dynamic | Automate parallelization of function calls by means of dynamic code analysis |
| parallelMap | Unified Interface to Parallelization Back-Ends |
| parallelMCMCcombine | Methods for combining independent subset Markov chain Monte Carlo (MCMC) posterior samples to estimate a posterior density given the full data set |
| parallelML | A Parallel-Voting Algorithm for many Classifiers |
| ParallelPC | Paralellised Versions of Constraint Based Causal Discovery Algorithms |
| parallelSVM | A Parallel-Voting Version of the Support-Vector-Machine Algorithm |
| ParallelTree | Parallel Tree |
| paramGUI | A Shiny GUI for some Parameter Estimation Examples |
| ParamHelpers | Helpers for Parameters in Black-Box Optimization, Tuning and Machine Learning |
| paramlink | Parametric Linkage and Other Pedigree Analysis in R |
| params | Simplify Parameters |
| paran | Horn's Test of Principal Components/Factors |
| parboost | Distributed Model-Based Boosting |
| parcor | Regularized estimation of partial correlation matrices |
| ParDNAcopy | Parallel implementation of the "segment" function of package "DNAcopy" |
| ParentOffspring | Conduct the Parent-Offspring Test Using Monomorphic SNP Markers |
| ParetoPosStable | Computing, Fitting and Validating the PPS Distribution |
| parfm | Parametric Frailty Models |
| parfossil | Parallelized functions for palaeoecological and palaeogeographical analysis |
| parlitools | Tools for Analysing UK Politics |
| parma | Portfolio Allocation and Risk Management Applications |
| parmigene | Parallel Mutual Information estimation for Gene Network reconstruction |
| PARSE | Model-Based Clustering with Regularization Methods for High-Dimensional Data |
| parsec | Partial Orders in Socio-Economics |
| parsedate | Recognize and Parse Dates in Various Formats, Including All ISO 8601 Formats |
| parsemsf | Parse Thermo MSF Files and Estimate Protein Abundances |
| partDSA | Partitioning Using Deletion, Substitution, and Addition Moves |
| partialAR | Partial Autoregression |
| partialCI | Partial Cointegration |
| Partiallyoverlapping | Partially Overlapping Samples t-Tests |
| partialOR | Partial Odds Ratio |
| partitionMap | Partition Maps |
| partitionMetric | Compute a distance metric between two partitions of a set |
| partitions | Additive Partitions of Integers |
| partools | Tools for the 'Parallel' Package |
| partsm | Periodic Autoregressive Time Series Models |
| party | A Laboratory for Recursive Partytioning |
| partykit | A Toolkit for Recursive Partytioning |
| parviol | Parviol |
| PAS | Polygenic Analysis System (PAS) |
| PASenseWear | Summarize Daily Physical Activity from 'SenseWear' Accelerometer Data |
| pass | Prediction and Stability Selection of Tuning Parameters |
| password | Create Random Passwords |
| pasta | Noodlyfied Pasting of Strings |
| pastecs | Package for Analysis of Space-Time Ecological Series |
| pastis | Phylogenetic Assembly with Soft Taxonomic Inferences |
| PASWR | PROBABILITY and STATISTICS WITH R |
| PASWR2 | Probability and Statistics with R, Second Edition |
| patchDVI | Package to Patch .dvi or .synctex Files |
| patchPlot | Scatterplots of image patches |
| patchSynctex | Communication Between Editor and Viewer for Literate Programs |
| PATHChange | A Tool for Identification of Differentially Expressed Pathways using Multi-Statistic Comparison |
| pathClass | Classification using biological pathways as prior knowledge |
| pathdiagram | Basic functions for drawing path diagrams |
| pathmapping | Compute Deviation and Correspondence Between Spatial Paths |
| pathmox | Pathmox Approach of Segmentation Trees in Partial Least Squares Path Modeling |
| pathological | Path Manipulation Utilities |
| PathSelectMP | Backwards Variable Selection for Paths using M Plus |
| patPRO | Visualizing Temporal Microbiome Data |
| PatternClass | Class-Focused Pattern Metric Comparisons using Simulation |
| patternize | Quantification of Color Pattern Variation |
| patternplot | Versatile Pie Chart using Patterns, Colors, and Images |
| pauwels2014 | Bayesian Experimental Design for Systems Biology |
| pavo | Perceptual Analysis, Visualization and Organization of Spectral Color Data in R |
| pawacc | Physical Activity with Accelerometers |
| PAWL | Implementation of the PAWL algorithm |
| pawls | Penalized Adaptive Weighted Least Squares Regression |
| pbapply | Adding Progress Bar to '*apply' Functions |
| pbatR | P2BAT |
| PBD | Protracted Birth-Death Model of Diversification |
| pbdBASE | Programming with Big Data – Base Wrappers for Distributed Matrices |
| pbdDEMO | Programming with Big Data – Demonstrations and Examples Using 'pbdR' Packages |
| pbdDMAT | 'pbdR' Distributed Matrix Methods |
| pbdMPI | Programming with Big Data – Interface to MPI |
| pbdNCDF4 | Programming with Big Data – Interface to Parallel Unidata NetCDF4 Format Data Files |
| pbdPROF | Programming with Big Data — MPI Profiling Tools |
| pbdRPC | Programming with Big Data – Remote Procedure Call |
| pbdSLAP | Programming with Big Data – Scalable Linear Algebra Packages |
| pbdZMQ | Programming with Big Data – Interface to ZeroMQ |
| PBIBD | Partially Balanced Incomplete Block Designs |
| PBImisc | A Set of Datasets Used in My Classes or in the Book 'Modele Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych' |
| pbivnorm | Vectorized Bivariate Normal CDF |
| pbkrtest | Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison |
| pbmcapply | Tracking the Progress of Mc*pply with Progress Bar |
| PBNPA | Permutation Based Non-Parametric Analysis of CRISPR Screen Data |
| pbo | Probability of Backtest Overfitting |
| pBrackets | Plot Brackets |
| pbs | Periodic B Splines |
| PBSadmb | ADMB for R Using Scripts or GUI |
| PBSddesolve | Solver for Delay Differential Equations |
| PBSmapping | Mapping Fisheries Data and Spatial Analysis Tools |
| PBSmodelling | GUI Tools Made Easy: Interact with Models and Explore Data |
| pca3d | Three Dimensional PCA Plots |
| PCA4TS | Segmenting Multiple Time Series by Contemporaneous Linear Transformation |
| pcaBootPlot | Create 2D Principal Component Plots with Bootstrapping |
| pcadapt | Fast Principal Component Analysis for Outlier Detection |
| PCADSC | Tools for Principal Component Analysis-Based Data Structure Comparisons |
| pcaL1 | L1-Norm PCA Methods |
| pcalg | Methods for Graphical Models and Causal Inference |
| PCAmixdata | Multivariate Analysis of Mixed Data |
| pcaPA | Parallel Analysis for Ordinal and Numeric Data using Polychoric and Pearson Correlations with S3 Classes |
| pcaPP | Robust PCA by Projection Pursuit |
| pcdpca | Dynamic Principal Components for Periodically Correlated Functional Time Series |
| PCDSpline | Semiparametric regression analysis of panel count data using monotone splines |
| pcev | Principal Component of Explained Variance |
| PCFAM | Computation of Ancestry Scores with Mixed Families and Unrelated Individuals |
| pcg | Preconditioned Conjugate Gradient Algorithm for solving Ax=b |
| PCGSE | Principal Component Gene Set Enrichment |
| pch | Piecewise Constant Hazards Models for Censored and Truncated Data |
| PCICt | Implementation of POSIXct work-alike for 365 and 360 day calendars |
| pcIRT | IRT Models for Polytomous and Continuous Item Responses |
| PCIT | Partial Correlation Coefficient with Information Theory |
| pcnetmeta | Patient-Centered Network Meta-Analysis |
| pco | Panel Cointegration Tests |
| PCovR | Principal Covariates Regression |
| PCPS | Principal Coordinates of Phylogenetic Structure |
| pcrcoal | Implementing the Coalescent Approach to PCR Simulation Developed by Weiss and Von Haeseler (NAR, 1997) |
| pcrsim | Simulation of the Forensic DNA Process |
| PCS | Calculate the probability of correct selection (PCS) |
| pcse | Panel-Corrected Standard Error Estimation in R |
| PCSinR | Parallel Constraint Satisfaction Networks in R |
| pdc | Permutation Distribution Clustering |
| pdfCluster | Cluster analysis via nonparametric density estimation |
| pdfetch | Fetch Economic and Financial Time Series Data from Public Sources |
| pdfsearch | Search Tools for PDF Files |
| pdftables | Programmatic Conversion of PDF Tables |
| pdftools | Text Extraction and Rendering of PDF Documents |
| pdist | Partitioned Distance Function |
| PDM | Photogrammetric Distances Measurer |
| pdmod | Proximal/distal modeling framework for Pavlovian conditioning phenomena |
| pdolsms | Panel Dynamic OLS Estimation of Cointegrating Vectors |
| pdp | Partial Dependence Plots |
| PdPDB | Pattern Discovery in PDB Structures of Metalloproteins |
| PDQutils | PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher Approximations |
| pdR | Threshold Model and Unit Root Tests in Panel Data |
| PDSCE | Positive definite sparse covariance estimators |
| pdSpecEst | Positive-Definite Wavelet-Based Multivariate Spectral Analysis |
| Peacock.test | Two and Three Dimensional Kolmogorov-Smirnov Two-Sample Tests |
| peacots | Periodogram Peaks in Correlated Time Series |
| peakPick | Peak Picking Methods Inspired by Biological Data |
| peakRAM | Monitor the Total and Peak RAM Used by an Expression or Function |
| Peaks | Peaks |
| pear | Package for Periodic Autoregression Analysis |
| pearson7 | Maximum Likelihood Inference for the Pearson VII Distribution with Shape Parameter 3/2 |
| PearsonDS | Pearson Distribution System |
| PearsonICA | Independent component analysis using score functions from the Pearson system |
| pec | Prediction Error Curves for Risk Prediction Models in Survival Analysis |
| pedantics | Functions to facilitate power and sensitivity analyses for genetic studies of natural populations |
| PedCNV | An implementation for association analysis with CNV data |
| pedgene | Gene-Level Statistics for Pedigree Data |
| pedigree | Pedigree functions |
| pedigreemm | Pedigree-based mixed-effects models |
| pedometrics | Pedometric Tools and Techniques |
| PeerPerformance | Luck-Corrected Peer Performance Analysis in R |
| pegas | Population and Evolutionary Genetics Analysis System |
| PEGroupTesting | Population Proportion Estimation using Group Testing |
| PEIP | Geophysical Inverse Theory and Optimization |
| PEMM | A Penalized EM algorithm incorporating missing-data mechanism |
| pems.utils | Portable Emissions (and Other Mobile) Measurement System Utilities |
| penalized | L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model |
| penalizedLDA | Penalized Classification using Fisher's Linear Discriminant |
| penalizedSVM | Feature Selection SVM using penalty functions |
| pencopula | Flexible Copula Density Estimation with Penalized Hierarchical B-Splines |
| PenCoxFrail | Regularization in Cox Frailty Models |
| pendensity | Density Estimation with a Penalized Mixture Approach |
| penDvine | Flexible Pair-Copula Estimation in D-Vines using Bivariate Penalized Splines |
| penMSM | Estimating Regularized Multi-state Models Using L1 Penalties |
| penRvine | Flexible R-Vines Estimation Using Bivariate Penalized Splines |
| pensim | Simulation of high-dimensional data and parallelized repeated penalized regression |
| peperr | Parallelised Estimation of Prediction Error |
| peplib | Peptide Library Analysis Methods |
| PepPrep | Insilico peptide mutation, digestion and homologous comparison |
| PepSAVIms | PepSAVI-MS Data Analysis |
| peptider | Evaluation of Diversity in Nucleotide Libraries |
| Peptides | Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences |
| pequod | Moderated Regression Package |
| perARMA | Periodic Time Series Analysis |
| Perc | Using Percolation and Conductance to Find Information Flow Certainty in a Direct Network |
| perccal | Implementing Double Bootstrap Linear Regression Confidence Intervals Using the 'perc-cal' Method |
| PerFit | Person Fit |
| PerfMeas | PerfMeas: Performance Measures for ranking and classification tasks |
| PerformanceAnalytics | Econometric tools for performance and risk analysis |
| performanceEstimation | An Infra-Structure for Performance Estimation of Predictive Models |
| pergola | Toolbox for Polyploid Genetic Data |
| PeriodicTable | Periodic Table of the Elements |
| perm | Exact or Asymptotic permutation tests |
| PermAlgo | Permutational Algorithm to Simulate Survival Data |
| PerMallows | Permutations and Mallows Distributions |
| permDep | Permutation Tests for General Dependent Truncation |
| permGPU | Using GPUs in Statistical Genomics |
| permGS | Permutational Group Sequential Test for Time-to-Event Data |
| permPATH | Permutation Based Gene Expression Pathway Analysis |
| permubiome | A Permutation Based Test for Biomarker Discovery in Microbiome Data |
| permutations | Permutations of a Finite Set |
| permute | Functions for Generating Restricted Permutations of Data |
| perry | Resampling-based prediction error estimation for regression models |
| persiandictionary | English to Persian dictionary |
| PersomicsArray | Automated Persomics Array Image Extraction |
| personograph | Pictographic Representation of Treatment Effects |
| perspectev | Permutation of Species During Turnover Events |
| perturb | Tools for evaluating collinearity |
| pesticides | Analysis of single serving and composite pesticide residue measurements |
| PET | Simulation and Reconstruction of PET Images |
| pETM | Penalized Exponential Tilt Model |
| petrinetR | Building, Visualizing, Exporting and Replaying Petri Nets |
| pewdata | Reproducible Retrieval of Pew Research Center Datasets |
| pez | Phylogenetics for the Environmental Sciences |
| pfa | Estimates False Discovery Proportion Under Arbitrary Covariance Dependence |
| pgam | Poisson-Gamma Additive Models |
| PGEE | Penalized Generalized Estimating Equations in High-Dimension |
| pgee.mixed | Penalized Generalized Estimating Equations for Bivariate Mixed Outcomes |
| PGICA | Parallel Group ICA Algorithm |
| pgirmess | Data Analysis in Ecology |
| pglm | panel generalized linear model |
| pGLS | Generalized Least Square in comparative Phylogenetics |
| PGM2 | Nested Resolvable Designs and their Associated Uniform Designs |
| pGMGM | Estimating Multiple Gaussian Graphical Models (GGM) in Penalized Gaussian Mixture Models (GMM) |
| pgmm | Parsimonious Gaussian Mixture Models |
| pgnorm | The p-Generalized Normal Distribution |
| pgraph | Build Dependency Graphs using Projection |
| pgs | Precision of Geometric Sampling |
| ph2bayes | Bayesian Single-Arm Phase II Designs |
| ph2bye | Phase II Clinical Trial Design Using Bayesian Methods |
| ph2mult | Phase II Clinical Trial Design for Multinomial Endpoints |
| phalen | Phalen Algorithms and Functions |
| phangorn | Phylogenetic Analysis in R |
| phantom | Gene Set Pareto Heterogeneity Analysis of Time-Course Gene Expression Data |
| PharmPow | Pharmacometric Power calculations for mixed study designs |
| phase1RMD | Repeated Measurement Design for Phase I Clinical Trial |
| phaseR | Phase Plane Analysis of One and Two Dimensional Autonomous ODE Systems |
| PhaseType | Inference for Phase-type Distributions |
| phcfM | Modelling anthropogenic deforestation |
| pheatmap | Pretty Heatmaps |
| phenability | Nonparametric Stability Analysis |
| phenex | Auxiliary Functions for Phenological Data Analysis |
| PHENIX | Phenotypic Integration Index |
| phenmod | Auxiliary functions for phenological data processing, modelling and result handling |
| pheno | Auxiliary functions for phenological data analysis |
| pheno2geno | High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains |
| phenology | Tools to Manage a Parametric Function that Describes Phenology |
| PhenotypeSimulator | Flexible Phenotype Simulation from Different Genetic and Noise Models |
| PHeval | Evaluation of the Proportional Hazards Assumption with a Standardized Score Process |
| phia | Post-Hoc Interaction Analysis |
| philentropy | Similarity and Distance Quantification Between Probability Functions |
| phmm | Proportional Hazards Mixed-effects Model (PHMM) |
| phonenumber | Convert Letters to Numbers and Back as on a Telephone Keypad |
| phonics | Phonetic Spelling Algorithms |
| phonR | Tools for Phoneticians and Phonologists |
| phonTools | Tools for Phonetic and Acoustic Analyses |
| photobiology | Photobiological Calculations |
| photobiologyInOut | Read Spectral and Logged Data from Foreign Files |
| photobiologyLamps | Spectral Data of Light Emission by Lamps |
| photobiologyLEDs | Spectral Data for Light-Emitting-Diodes |
| photobiologyPlants | Plant Photobiology Related Functions and Data |
| photobiologyWavebands | Waveband Definitions for UV, VIS, and IR Radiation |
| phrasemachine | Simple Phrase Extraction |
| phreeqc | R Interface to Geochemical Modeling Software |
| phtt | Panel Data Analysis with Heterogeneous Time Trends |
| phuassess | Proportional Habitat Use Assessment |
| PhViD | PharmacoVigilance Signal Detection |
| Phxnlme | Run Phoenix NLME and Perform Post-Processing |
| phybreak | Analysis of Outbreaks with Sequence Data |
| phyclust | Phylogenetic Clustering (Phyloclustering) |
| phyext2 | An Extension (for Package 'SigTree') of Some of the Classes in Package 'phylobase' |
| PhyInformR | Rapid Calculation of Phylogenetic Information Content |
| phylin | Spatial Interpolation of Genetic Data |
| phylobase | Base Package for Phylogenetic Structures and Comparative Data |
| phylocanvas | Interactive Phylogenetic Trees Using the 'Phylocanvas' JavaScript Library |
| phyloclim | Integrating Phylogenetics and Climatic Niche Modeling |
| phylocurve | Phylogenetic Comparative Methods for High-Dimensional Traits |
| phylodyn | Statistical Tools for Phylodynamics |
| PhylogeneticEM | Automatic Shift Detection using a Phylogenetic EM |
| PHYLOGR | Functions for Phylogenetically Based Statistical Analyses |
| phyloland | Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework |
| phylolm | Phylogenetic Linear Regression |
| PhyloMeasures | Fast and Exact Algorithms for Computing Phylogenetic Biodiversity Measures |
| phylometrics | Estimating Statistical Errors of Phylogenetic Metrics |
| phylopath | Perform Phylogenetic Path Analysis |
| phylosignal | Exploring the Phylogenetic Signal in Continuous Traits |
| phylosim | Flexible Simulations of Biological Sequence Evolution |
| phylotate | Phylogenies with Annotations |
| phylotools | Phylogenetic tools for Eco-phylogenetics |
| phyloTop | Calculating Topological Properties of Phylogenies |
| phyndr | Matches Tip and Trait Data |
| phyreg | Implements the Phylogenetic Regression of Grafen (1989) |
| PhysActBedRest | Marks Periods of 'Bedrest' in Actigraph Accelerometer Data |
| PhysicalActivity | Process Physical Activity Accelerometer Data |
| physiology | Calculate Physiological Characteristics of Adults and Children |
| PhySortR | A Fast, Flexible Tool for Sorting Phylogenetic Trees |
| phytools | Phylogenetic Tools for Comparative Biology (and Other Things) |
| phytotools | Phytoplankton Production Tools |
| pi0 | Estimating the Proportion of True Null Hypotheses for FDR |
| picante | R tools for integrating phylogenies and ecology |
| picasso | Pathwise Calibrated Sparse Shooting Algorithm |
| pid | Process Improvement using Data |
| piecewiseSEM | Piecewise Structural Equation Modeling |
| PIGE | Self contained gene set analysis for gene- and pathway-environment interaction analysis |
| PIGShift | Polygenic Inverse Gamma Shifts |
| Pijavski | Global Univariate Minimization |
| pim | Fit Probabilistic Index Models |
| pinbasic | Fast and Stable Estimation of the Probability of Informed Trading (PIN) |
| pinfsc50 | Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17 Samples of 'P. Infestans" and 1 'P. Mirabilis' |
| pingr | Check if a Remote Computer is Up |
| pinnacle.API | A Wrapper for the Pinnacle API |
| pipe.design | Dual-Agent Dose Escalation for Phase I Trials using the PIPE Design |
| pipefittr | Convert Nested Functions to Pipes |
| pipeGS | Permutation p-Value Estimation for Gene Set Tests |
| pipeliner | Machine Learning Pipelines for R |
| pipeR | Multi-Paradigm Pipeline Implementation |
| PIPS | Predicted Interval Plots |
| pirate | Generated Effect Modifier |
| pitchRx | Tools for Harnessing 'MLBAM' 'Gameday' Data and Visualizing 'pitchfx' |
| PivotalR | A Fast, Easy-to-Use Tool for Manipulating Tables in Databases and a Wrapper of MADlib |
| pivottabler | Create Pivot Tables in R |
| pixiedust | Tables so Beautifully Fine-Tuned You Will Believe It's Magic |
| pixmap | Bitmap Images (“Pixel Maps”) |
| PK | Basic Non-Compartmental Pharmacokinetics |
| pkgconfig | Private Configuration for 'R' Packages |
| pkgcopier | Copy Local R Packages to Another Environment |
| pkgKitten | Create Simple Packages Which Do not Upset R Package Checks |
| pkgmaker | Package development utilities |
| PKgraph | Model diagnostics for population pharmacokinetic models |
| PKI | Public Key Infrastucture for R Based on the X.509 Standard |
| pkmon | Least-Squares Estimator under k-Monotony Constraint for Discrete Functions |
| PKNCA | Perform Pharmacokinetic Non-Compartmental Analysis |
| PKPDmodels | Pharmacokinetic/pharmacodynamic models |
| pkr | Pharmacokinetics in R |
| PKreport | A reporting pipeline for checking population pharmacokinetic model assumption |
| pks | Probabilistic Knowledge Structures |
| pla | Parallel Line Assays |
| plac | A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated Data |
| placement | Tools for Accessing the Google Maps API |
| plan | Tools for project planning |
| planar | Multilayer Optics |
| Planesmuestra | Functions for Calculating Dodge Romig, MIL STD 105E and MIL STD 414 Acceptance Sampling Plan |
| planor | Generation of Regular Factorial Designs |
| plantecophys | Modelling and Analysis of Leaf Gas Exchange Data |
| plaqr | Partially Linear Additive Quantile Regression |
| PlasmaMutationDetector | Tumor Mutation Detection in Plasma |
| Plasmidprofiler | Visualization of Plasmid Profile Results |
| plater | Read, Tidy, and Display Data from Microtiter Plates |
| platetools | Tools and Plots for Multi-Well Plates |
| PlayerRatings | Dynamic Updating Methods for Player Ratings Estimation |
| playwith | A GUI for interactive plots using GTK+ |
| pleiades | Interface to the 'Pleiades' 'Archeological' Database |
| pleio | Pleiotropy Test for Multiple Traits on a Genetic Marker |
| plfm | Probabilistic Latent Feature Analysis |
| plfMA | A GUI to View, Design and Export Various Graphs of Data |
| plgp | Particle Learning of Gaussian Processes |
| plink | IRT Separate Calibration Linking Methods |
| PLIS | Multiplicity control using Pooled LIS statistic |
| plm | Linear Models for Panel Data |
| plmDE | Additive partially linear models for differential gene expression analysis |
| PLMIX | Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for Partial Rankings/Orderings |
| plmm | Partially Linear Mixed Effects Model |
| pln | Polytomous logit-normit (graded logistic) model estimation |
| plogr | The 'plog' C++ Logging Library |
| PLordprob | Multivariate Ordered Probit Model via Pairwise Likelihood |
| plot3D | Plotting Multi-Dimensional Data |
| plot3Drgl | Plotting Multi-Dimensional Data - Using 'rgl' |
| plotfunctions | Various Functions to Facilitate Visualization of Data and Analysis |
| plotGoogleMaps | Plot Spatial or Spatio-Temporal Data Over Google Maps |
| plotKML | Visualization of Spatial and Spatio-Temporal Objects in Google Earth |
| plotluck | 'ggplot2' Version of "I'm Feeling Lucky!" |
| plotly | Create Interactive Web Graphics via 'plotly.js' |
| plotMCMC | MCMC Diagnostic Plots |
| plotMElm | Plot Marginal Effects from Linear Models |
| plotmo | Plot a Model's Response and Residuals |
| plotpc | Plot Principal Component Histograms Around a Scatter Plot |
| PlotPrjNetworks | Useful Networking Tools for Project Management |
| plotprotein | Development of Visualization Tools for Protein Sequence |
| PlotRegionHighlighter | Creates an envelope that surrounds a set of points plotted in a two dimensional space |
| plotrix | Various Plotting Functions |
| plotROC | Generate Useful ROC Curve Charts for Print and Interactive Use |
| plotrr | Making Visual Exploratory Data Analysis Easier |
| plotSEMM | Graphing Nonlinear Relations Among Latent Variables from Structural Equation Mixture Models |
| plotwidgets | Spider Plots, ROC Curves, Pie Charts and More for Use in Other Plots |
| plRasch | Log Linear by Linear Association models and Rasch family models by pseudolikelihood estimation |
| PLRModels | Statistical inference in partial linear regression models |
| pls | Partial Least Squares and Principal Component Regression |
| PLSbiplot1 | The Partial Least Squares (PLS) Biplot |
| plsdepot | Partial Least Squares (PLS) Data Analysis Methods |
| plsdof | Degrees of Freedom and Statistical Inference for Partial Least Squares Regression |
| plsgenomics | PLS Analyses for Genomics |
| plspm | Tools for Partial Least Squares Path Modeling (PLS-PM) |
| plspm.formula | Formula Based PLS Path Modeling |
| plspolychaos | Sensitivity Indexes from Polynomial Chaos Expansions and PLS |
| plsRbeta | Partial Least Squares Regression for Beta Regression Models |
| plsRcox | Partial Least Squares Regression for Cox Models and Related Techniques |
| plsRglm | Partial Least Squares Regression for Generalized Linear Models |
| plsVarSel | Variable Selection in Partial Least Squares |
| pltesim | Simulate Probabilistic Long-Term Effects in Models with Temporal Dependence |
| plugdensity | Plug-in Kernel Density Estimation |
| plumber | An API Generator for R |
| plumbr | Mutable and dynamic data models |
| plus | Penalized Linear Unbiased Selection |
| plusser | A Google+ Interface for R |
| plyr | Tools for Splitting, Applying and Combining Data |
| PMA | Penalized Multivariate Analysis |
| pmc | Phylogenetic Monte Carlo |
| pmcgd | pmcgd |
| pmclust | Parallel Model-Based Clustering using Expectation-Gathering-Maximization Algorithm for Finite Mixture Gaussian Model |
| PMCMR | Calculate Pairwise Multiple Comparisons of Mean Rank Sums |
| pmhtutorial | Minimal Working Examples for Particle Metropolis-Hastings |
| pMineR | Processes Mining in Medicine |
| pmlr | Penalized Multinomial Logistic Regression |
| pmml | Generate PMML for Various Models |
| pmmlTransformations | Transforms Input Data from a PMML Perspective |
| pmr | Probability Models for Ranking Data |
| png | Read and write PNG images |
| pnmtrem | Probit-Normal Marginalized Transition Random Effects Models |
| pnn | Probabilistic neural networks |
| pocrm | Dose Finding in Drug Combination Phase I Trials Using PO-CRM |
| POET | Principal Orthogonal ComplEment Thresholding (POET) Method |
| pogit | Bayesian Variable Selection for a Poisson-Logistic Model |
| PogromcyDanych | PogromcyDanych / DataCrunchers is the Masive Online Open Course that Brings R and Statistics to the People |
| poibin | The Poisson Binomial Distribution |
| PoiClaClu | Classification and clustering of sequencing data based on a Poisson model |
| poilog | Poisson lognormal and bivariate Poisson lognormal distribution |
| pointdensityP | Point Density for Geospatial Data |
| pointRes | Analyzing Pointer Years and Components of Resilience |
| poio | Input/Output Functionality for "PO" and "POT" Message Translation Files |
| PoisBinNonNor | Data Generation with Poisson, Binary and Continuous Components |
| poisbinom | A Faster Implementation of the Poisson-Binomial Distribution |
| PoisBinOrd | Data Generation with Poisson, Binary and Ordinal Components |
| PoisBinOrdNonNor | Generation of Up to Four Different Types of Variables |
| PoisBinOrdNor | Data Generation with Poisson, Binary, Ordinal and Normal Components |
| poisDoubleSamp | Confidence Intervals with Poisson Double Sampling |
| PoisNonNor | Simultaneous Generation of Count and Continuous Data |
| PoisNor | Simultaneous Generation of Multivariate Data with Poisson and Normal Marginals |
| poisson | Simulating Homogenous & Non-Homogenous Poisson Processes |
| poisson.glm.mix | Fit high dimensional mixtures of Poisson GLMs |
| PoissonSeq | Significance analysis of sequencing data based on a Poisson log linear model |
| poistweedie | Poisson-Tweedie exponential family models |
| poLCA | Polytomous variable Latent Class Analysis |
| polidata | Political Data Interface in R |
| poliscidata | Datasets and Functions Featured in Pollock and Edwards R Companion to Essential of Political Analysis |
| pollen | Analysis of Aerobiological Data |
| pollstR | Client for the HuffPost Pollster API |
| polmineR | Toolkit for Corpus Analysis |
| polspline | Polynomial Spline Routines |
| polyaAeppli | Implementation of the Polya-Aeppli distribution |
| polyapost | Simulating from the Polya Posterior |
| polychaosbasics | Sensitivity Indexes Calculated from Polynomial Chaos Expansions |
| Polychrome | Qualitative Palettes with Many Colors |
| polyclip | Polygon Clipping |
| polycor | Polychoric and Polyserial Correlations |
| polyCub | Cubature over Polygonal Domains |
| polyfreqs | Bayesian Population Genomics in Autopolyploids |
| polynom | A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations |
| PolynomF | Polynomials in R |
| PolyPatEx | Paternity Exclusion in Autopolyploid Species |
| polysat | Tools for Polyploid Microsatellite Analysis |
| polySegratio | Simulate and test marker dosage for dominant markers in autopolyploids |
| polySegratioMM | Bayesian mixture models for marker dosage in autopolyploids |
| PolyTrend | Trend Classification Algorithm |
| polywog | Bootstrapped Basis Regression with Oracle Model Selection |
| pom | POM - Patch Occupancy Models |
| Pomic | Pattern Oriented Modelling Information Criterion |
| pomp | Statistical Inference for Partially Observed Markov Processes |
| pooh | Partial Orders and Relations |
| pop | A Flexible Syntax for Population Dynamic Modelling |
| pop.wolf | Models for Simulating Wolf Populations |
| popbio | Construction and Analysis of Matrix Population Models |
| popdemo | Demographic Modelling Using Projection Matrices |
| PopED | Population (and Individual) Optimal Experimental Design |
| popEpi | Functions for Epidemiological Analysis using Population Data |
| PopGenKit | Useful functions for (batch) file conversion and data resampling in microsatellite datasets |
| PopGenome | An Efficient Swiss Army Knife for Population Genomic Analyses |
| PopGenReport | A Simple Framework to Analyse Population and Landscape Genetic Data |
| popKorn | For interval estimation of mean of selected populations |
| poplite | Tools for Simplifying the Population and Querying of SQLite Databases |
| poppr | Genetic Analysis of Populations with Mixed Reproduction |
| popprxl | Read GenAlEx Files Directly from Excel |
| popRange | popRange: A spatially and temporally explicit forward genetic simulator |
| popReconstruct | Reconstruct Human Populations of the Recent Past |
| popsom | Functions for Constructing and Evaluating Self-Organizing Maps |
| poptrend | Estimate Smooth and Linear Trends from Population Count Survey Data |
| population | Models for Simulating Populations |
| PopVar | Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation |
| portes | Portmanteau Tests for Univariate and Multivariate Time Series Models |
| portfolio | Analysing equity portfolios |
| PortfolioAnalytics | Portfolio Analysis, Including Numerical Methods for Optimization of Portfolios |
| PortfolioEffectEstim | High Frequency Price Estimators by PortfolioEffect |
| PortfolioEffectHFT | High Frequency Portfolio Analytics by PortfolioEffect |
| PortfolioOptim | Small/Large Sample Portfolio Optimization |
| portfolioSim | Framework for simulating equity portfolio strategies |
| PortRisk | Portfolio Risk Analysis |
| PoSI | Valid Post-Selection Inference for Linear LS Regression |
| postGIStools | Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases |
| POT | Generalized Pareto Distribution and Peaks Over Threshold |
| potts | Markov Chain Monte Carlo for Potts Models |
| PottsUtils | Utility Functions of the Potts Models |
| POUMM | The Phylogenetic Ornstein-Uhlenbeck Mixed Model |
| powell | Powell's UObyQA algorithm |
| PoweR | Computation of Power and Level Tables for Hypothesis Tests |
| Power2Stage | Power and Sample-Size Distribution of 2-Stage Bioequivalence Studies |
| powerAnalysis | Power Analysis in Experimental Design |
| powerbydesign | Power Estimates for ANOVA Designs |
| powerCompRisk | Power Analysis Tool for Joint Testing Hazards with Competing Risks Data |
| powerEQTL | Power and Sample Size Calculation for eQTL Analysis |
| powerGWASinteraction | Power Calculations for GxE and GxG Interactions for GWAS |
| poweRlaw | Analysis of Heavy Tailed Distributions |
| powerMediation | Power/Sample Size Calculation for Mediation Analysis |
| powerpkg | Power analyses for the affected sib pair and the TDT design |
| powerplus | Exponentiation Operations |
| powerSurvEpi | Power and Sample Size Calculation for Survival Analysis of Epidemiological Studies |
| PowerTOST | Power and Sample Size Based on Two One-Sided t-Tests (TOST) for (Bio)Equivalence Studies |
| PowerUpR | Power Analysis Tools for Multilevel Randomized Experiments |
| PP | Person Parameter Estimation |
| ppcor | Partial and Semi-Partial (Part) Correlation |
| ppiPre | Predict Protein-Protein Interactions Based on Functional and Topological Similarities |
| ppls | Penalized Partial Least Squares |
| ppmlasso | Point Process Models with LASSO Penalties |
| pps | Functions for PPS sampling |
| PPtree | Projection pursuit classification tree |
| PPtreeViz | Projection Pursuit Classification Tree Visualization |
| pqantimalarials | web tool for estimating under-five deaths caused by poor-quality antimalarials in sub-Saharan Africa |
| prabclus | Functions for Clustering of Presence-Absence, Abundance and Multilocus Genetic Data |
| pracma | Practical Numerical Math Functions |
| PracTools | Tools for Designing and Weighting Survey Samples |
| pragma | Provides a pragma / directive / keyword syntax for R |
| prais | Prais-Winsten Estimation Procedure for AR(1) Serial Correlation |
| praise | Praise Users |
| praktikum | Kvantitatiivsete meetodite praktikumi asjad / Functions used in the course "Quantitative methods in behavioural sciences" (SHPH.00.004), University of Tartu |
| prc | Paired Response Curve |
| prcbench | Testing Workbench for Precision-Recall Curves |
| prclust | Penalized Regression-Based Clustering Method |
| prcr | Person-Centered Analysis |
| pre | Prediction Rule Ensembles |
| precintcon | Precipitation Intensity, Concentration and Anomaly Analysis |
| precrec | Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves |
| predatory | Tools for Detecting Predatory Publishers and Journals |
| PredictABEL | Assessment of Risk Prediction Models |
| prediction | Tidy, Type-Safe 'prediction()' Methods |
| predictionInterval | Prediction Interval Functions for Assessing Replication Study Results |
| PredictiveRegression | Prediction Intervals for Three Basic Statistical Models |
| predictmeans | Calculate Predicted Means for Linear Models |
| PredictTestbench | Test Bench for Comparison of Data Prediction Models |
| predmixcor | Classification rule based on Bayesian mixture models with feature selection bias corrected |
| PredPsych | Predictive Approaches in Psychology |
| prefeR | R Package for Pairwise Preference Elicitation |
| prefmod | Utilities to Fit Paired Comparison Models for Preferences |
| PreKnitPostHTMLRender | Pre-Knitting Processing and Post HTML-Rendering Processing |
| PReMiuM | Dirichlet Process Bayesian Clustering, Profile Regression |
| prepdat | Preparing Experimental Data for Statistical Analysis |
| preprocomb | Tools for Preprocessing Combinations |
| preprosim | Lightweight Data Quality Simulation for Classification |
| preproviz | Tools for Visualization of Interdependent Data Quality Issues |
| prereg | R Markdown Templates to Preregister Scientific Studies |
| PresenceAbsence | Presence-Absence Model Evaluation |
| presens | Interface for PreSens Fiber Optic Data |
| preseqR | Predicting the Number of Species in a Random Sample |
| PResiduals | Probability-Scale Residuals and Residual Correlations |
| preText | Diagnostics to Assess the Effects of Text Preprocessing Decisions |
| prettycode | Pretty Print R Code in the Terminal |
| prettydoc | Creating Pretty Documents from R Markdown |
| prettyGraphs | publication-quality graphics |
| prettymapr | Scale Bar, North Arrow, and Pretty Margins in R |
| prettyR | Pretty Descriptive Stats |
| prettyunits | Pretty, Human Readable Formatting of Quantities |
| prevalence | Tools for Prevalence Assessment Studies |
| PrevMap | Geostatistical Modelling of Spatially Referenced Prevalence Data |
| prevR | Estimating Regional Trends of a Prevalence from a DHS |
| pRF | Permutation Significance for Random Forests |
| prim | Patient Rule Induction Method (PRIM) |
| primefactr | Use Prime Factorization for Computations |
| primer | Functions and data for A Primer of Ecology with R |
| primerTree | Visually Assessing the Specificity and Informativeness of Primer Pairs |
| primes | Generate and Test for Prime Numbers |
| PRIMME | Eigenvalues and Singular Values and Vectors from Large Matrices |
| PRIMsrc | PRIM Survival Regression Classification |
| princurve | Fits a Principal Curve in Arbitrary Dimension |
| prinsimp | Finding and plotting simple basis vectors for multivariate data |
| printr | Automatically Print R Objects to Appropriate Formats According to the 'knitr' Output Format |
| prioritylasso | Analyzing Multiple Omics Data with an Offset Approach |
| prism | Access Data from the Oregon State Prism Climate Project |
| PRISMA | Protocol Inspection and State Machine Analysis |
| PRISMAstatement | Plot Flow Charts According to the "PRISMA" Statement |
| PrivateLR | Differentially Private Regularized Logistic Regression |
| prLogistic | Estimation of Prevalence Ratios using Logistic Models |
| pro | Point-Process Response Model for Optogenetics |
| prob | Elementary Probability on Finite Sample Spaces |
| probemod | Statistical Tools for Probing Moderation Effects |
| probFDA | Probabilistic Fisher Discriminant Analysis |
| ProbForecastGOP | Probabilistic weather forecast using the GOP method |
| ProbitSpatial | Probit with Spatial Dependence, SAR and SEM Models |
| probsvm | probsvm: Class probability estimation for Support Vector Machines |
| ProbYX | Inference for the Stress-Strength Model R = P(Y<X) |
| pROC | Display and Analyze ROC Curves |
| proccalibrad | Extraction of Bands from MODIS Calibrated Radiances MOD02 NRT |
| processcontrol | Statistical Process Control Charts |
| ProDenICA | Product Density Estimation for ICA using tilted Gaussian density estimates |
| prodigenr | Research Project Directory Generator |
| prodlim | Product-Limit Estimation for Censored Event History Analysis |
| productivity | Indices of Productivity Using Data Envelopment Analysis (DEA) |
| productplots | Product Plots for R |
| prof.tree | An Alternative Display Profiling Data as Tree Structure |
| PROFANCY | The package can prioritize candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways |
| profdpm | Profile Dirichlet Process Mixtures |
| ProfessR | Grades Setting and Exam Maker |
| ProfileLikelihood | Profile Likelihood for a Parameter in Commonly Used Statistical Models |
| profileModel | Tools for profiling inference functions for various model classes |
| profileR | Profile Analysis of Multivariate Data in R |
| profilr | Quickly Profile Data in R |
| ProFit | Fit Projected 2D Profiles to Galaxy Images |
| profmem | Simple Memory Profiling for R |
| profr | An alternative display for profiling information |
| proftools | Profile Output Processing Tools for R |
| profvis | Interactive Visualizations for Profiling R Code |
| progenyClust | Finding the Optimal Cluster Number Using Progeny Clustering |
| ProgGUIinR | support package for "Programming Graphical User Interfaces in R" |
| prognosticROC | Prognostic ROC curves for evaluating the predictive capacity of a binary test |
| progress | Terminal Progress Bars |
| proj4 | A simple interface to the PROJ.4 cartographic projections library |
| ProjectTemplate | Automates the Creation of New Statistical Analysis Projects |
| ProliferativeIndex | Calculates and Analyzes the Proliferative Index |
| ProNet | Biological Network Construction, Visualization and Analyses |
| prop.comb.RR | Analyzing Combination of Proportions and Relative Risk |
| propagate | Propagation of Uncertainty |
| PropCIs | Various confidence interval methods for proportions |
| PropClust | Propensity Clustering and Decomposition |
| properties | Parse Java Properties Files for R Service Bus Applications |
| prophet | Automatic Forecasting Procedure |
| proportion | Inference on Single Binomial Proportion and Bayesian Computations |
| propOverlap | Feature (gene) selection based on the Proportional Overlapping Scores |
| propr | Calculating Proportionality Between Vectors of Compositional Data |
| PropScrRand | Propensity score methods for assigning treatment in randomized trials |
| PROreg | Patient Reported Outcomes Regression Analysis |
| PROscorer | Functions to Score Commonly-Used Patient-Reported Outcome (PRO) Measures and Other Psychometric Instruments |
| PROscorerTools | Tools to Score Patient-Reported Outcome (PRO) and Other Psychometric Measures |
| prospectr | Miscellaneous functions for processing and sample selection of vis-NIR diffuse reflectance data |
| ProteinDescriptors | Generates Various Protein Descriptors for Machine Learning Algorithms |
| proteomicdesign | Optimization of a multi-stage proteomic study |
| proteomics | Statistical Analysis of High Throughput Proteomics Data |
| protiq | Protein (identification and) quantification based on peptide evidence |
| proto | Prototype Object-Based Programming |
| protoclass | Interpretable classification with prototypes |
| protoclust | Hierarchical Clustering with Prototypes |
| PROTOLIDAR | PRocess TOol LIdar DAta in R |
| protolite | Fast and Simple Object Serialization to Protocol Buffers |
| proton | The Proton Game |
| prototest | Inference on Prototypes from Clusters of Features |
| protr | Generating Various Numerical Representation Schemes for Protein Sequences |
| ProTrackR | Manipulate and Play 'ProTracker' Modules |
| protViz | Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics |
| provenance | Statistical Toolbox for Sedimentary Provenance Analysis |
| proxy | Distance and Similarity Measures |
| prozor | Minimal Protein Set Explaining Peptide Spectrum Matches |
| PRROC | Precision-Recall and ROC Curves for Weighted and Unweighted Data |
| pRSR | Test of Periodicity using Response Surface Regression |
| pryr | Tools for Computing on the Language |
| Przewodnik | Datasets and Functions Used in the Book 'Przewodnik po Pakiecie R' |
| PSAboot | Bootstrapping for Propensity Score Analysis |
| PSAgraphics | Propensity Score Analysis Graphics |
| psbcGroup | Penalized Parametric and Semiparametric Bayesian Survival Models with Shrinkage and Grouping Priors |
| PSCBS | Analysis of Parent-Specific DNA Copy Numbers |
| pscl | Political Science Computational Laboratory, Stanford University |
| pscore | Standardizing Physiological Composite Risk Endpoints |
| psd | Adaptive, Sine-Multitaper Power Spectral Density Estimation |
| psData | Download Regularly Maintained Political Science Data Sets |
| pse | Parameter Space Exploration with Latin Hypercubes |
| pseudo | Pseudo - observations |
| pseval | Methods for Evaluating Principal Surrogates of Treatment Response |
| PSF | Forecasting of Univariate Time Series Using the Pattern Sequence-Based Forecasting (PSF) Algorithm |
| psgp | Projected Spatial Gaussian Process (psgp) methods |
| pSI | Specificity Index Statistic |
| psidR | Build Panel Data Sets from PSID Raw Data |
| PsiHat | Several Local False Discovery Rate Estimators |
| pso | Particle Swarm Optimization |
| psoptim | Particle Swarm Optimization |
| pspearman | Spearman's rank correlation test |
| pspline | Penalized Smoothing Splines |
| pssm | Piecewise Exponential Model for Time to Progression and Time from Progression to Death |
| PST | Probabilistic Suffix Trees and Variable Length Markov Chains |
| Pstat | Assessing Pst Statistics |
| pstest | Specification Tests for Parametric Propensity Score Models |
| PsumtSim | Simulations of grouped responses relative to baseline |
| psy | Various procedures used in psychometry |
| psych | Procedures for Psychological, Psychometric, and Personality Research |
| psychometric | Applied Psychometric Theory |
| psychomix | Psychometric Mixture Models |
| psychotools | Infrastructure for Psychometric Modeling |
| psychotree | Recursive Partitioning Based on Psychometric Models |
| psyphy | Functions for analyzing psychophysical data in R |
| psytabs | Produce Well-Formatted Tables for Psychological Research |
| PTAk | Principal Tensor Analysis on k Modes |
| PTE | Personalized Treatment Evaluator |
| ptest | Periodicity Tests in Short Time Series |
| ptinpoly | Point-In-Polyhedron Test (2D and 3D) |
| PtProcess | Time Dependent Point Process Modelling |
| ptstem | Stemming Algorithms for the Portuguese Language |
| ptw | Parametric Time Warping |
| ptwikiwords | Words Used in Portuguese Wikipedia |
| PTXQC | Quality Report Generation for MaxQuant Results |
| ptycho | Bayesian Variable Selection with Hierarchical Priors |
| PubBias | Performs simulation study to look for publication bias, using a technique described by Ioannidis and Trikalinos; Clin Trials. 2007;4(3):245-53 |
| pubmed.mineR | Text Mining of PubMed Abstracts |
| PubMedWordcloud | 'Pubmed' Word Clouds |
| pubprint | Printing Results of Statistical Computing in a Publishable Way |
| pullword | R Interface to Pullword Service |
| pulsar | Parallel Utilities for Lambda Selection along a Regularization Path |
| pumilioR | Pumilio in R |
| PurBayes | Bayesian Estimation of Tumor Purity and Clonality |
| purge | Purge Training Data from Models |
| purrr | Functional Programming Tools |
| purrrlyr | Tools at the Intersection of 'purrr' and 'dplyr' |
| pushoverr | Send Push Notifications using Pushover |
| PVAClone | Population Viability Analysis with Data Cloning |
| pvar | Calculation and Application of p-Variation |
| pvclass | P-Values for Classification |
| pvclust | Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling |
| pvsR | An R package to interact with the Project Vote Smart API for scientific research |
| PWD | Time Series Regression Using the Power Weighted Densities (PWD) Approach |
| PWEALL | Design and Monitoring of Survival Trials Accounting for Complex Situations |
| pweight | P-Value Weighting |
| PWFSLSmoke | Utilities for Working with Air Quality Monitoring Data |
| pwr | Basic Functions for Power Analysis |
| pwr2 | Power and Sample Size Analysis for One-way and Two-way ANOVA Models |
| PwrGSD | Power in a Group Sequential Design |
| pwrRasch | Statistical Power Simulation for Testing the Rasch Model |
| pwt | Penn World Table (Versions 5.6, 6.x, 7.x) |
| pwt8 | Penn World Table (Version 8.x) |
| pwt9 | Penn World Table (Version 9.x) |
| pxR | PC-Axis with R |
| pxweb | R Interface to the PX-Web/PC-Axis API |
| pycno | Pycnophylactic Interpolation |
| pyramid | Functions to draw population pyramid |
| PythonInR | Use Python from Within R |
| qap | Heuristics for the Quadratic Assignment Problem (QAP) |
| qat | Quality Assurance Toolkit |
| qboxplot | Quantile-Based Boxplot |
| QCA | Qualitative Comparative Analysis |
| QCAfalsePositive | Tests for Type I Error in Qualitative Comparative Analysis (QCA) |
| QCAGUI | Qualitative Comparative Analysis GUI |
| QCApro | Professional Functionality for Performing and Evaluating Qualitative Comparative Analysis |
| QCAtools | Helper Functions for QCA in R |
| qcc | Quality Control Charts |
| QCEWAS | Fast and Easy Quality Control of EWAS Results Files |
| QCGWAS | Quality Control of Genome Wide Association Study results |
| qclust | Robust Estimation of Gaussian Mixture Models |
| qcr | Quality Control Review |
| QCSimulator | A 5-Qubit Quantum Computing Simulator |
| QCSIS | Sure Independence Screening via Quantile Correlation and Composite Quantile Correlation |
| qdap | Bridging the Gap Between Qualitative Data and Quantitative Analysis |
| qdapDictionaries | Dictionaries and Word Lists for the 'qdap' Package |
| qdapRegex | Regular Expression Removal, Extraction, and Replacement Tools |
| qdapTools | Tools for the 'qdap' Package |
| qdm | Fitting a Quadrilateral Dissimilarity Model to Same-Different Judgments |
| QFASA | Quantitative Fatty Acid Signature Analysis |
| qfasar | Quantitative Fatty Acid Signature Analysis in R |
| QFRM | Pricing of Vanilla and Exotic Option Contracts |
| qGaussian | The q-Gaussian Distribution |
| QGglmm | Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models |
| qgraph | Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation |
| qgtools | Tools for Quantitative Genetics Data Analyses |
| qha | Qualitative Harmonic Analysis |
| QICD | Estimate the Coefficients for Non-Convex Penalized Quantile Regression Model by using QICD Algorithm |
| qicharts | Quality Improvement Charts |
| qiimer | Work with QIIME Output Files in R |
| qiitr | R Interface to Qiita API |
| qlcData | Processing Data for Quantitative Language Comparison (QLC) |
| qlcMatrix | Utility Sparse Matrix Functions for Quantitative Language Comparison |
| qlcVisualize | Visualization for Quantitative Language Comparison (QLC) |
| qLearn | Estimation and inference for Q-learning |
| qmap | Statistical Transformations for Post-Processing Climate Model Output |
| qmethod | Analysis of Subjective Perspectives Using Q Methodology |
| qmrparser | Parser combinator in R |
| QNB | Differential RNA Methylation Analysis for Count-Based Small-Sample Sequencing Data with a Quad-Negative Binomial Model |
| QoLR | Analysis of Health-Related Quality of Life in Oncology |
| qpcR | Modelling and analysis of real-time PCR data |
| qPCR.CT | qPCR data analysis and plot package |
| QPot | Quasi-Potential Analysis for Stochastic Differential Equations |
| qqman | Q-Q and Manhattan Plots for GWAS Data |
| QQperm | Permutation Based QQ Plot and Inflation Factor Estimation |
| qqtest | Self Calibrating Quantile-Quantile Plots for Visual Testing |
| qqvases | Animated Normal Quantile-Quantile Plots |
| QRAGadget | A 'Shiny' Gadget for Interactive 'QRA' Visualizations |
| qrage | Tools that Create D3 JavaScript Force Directed Graph from R |
| QRank | A Novel Quantile Regression Approach for eQTL Discovery |
| qrcm | Quantile Regression Coefficients Modeling |
| qrcode | QRcode Generator for R |
| QRegVCM | Quantile Regression in Varying-Coefficient Models |
| qrencoder | Quick Response Code (QR Code) / Matrix Barcode Creator |
| qrfactor | Simultaneous simulation of Q and R mode factor analyses with Spatial data |
| qrjoint | Joint Estimation in Linear Quantile Regression |
| qrLMM | Quantile Regression for Linear Mixed-Effects Models |
| QRM | Provides R-Language Code to Examine Quantitative Risk Management Concepts |
| qrmdata | Data Sets for Quantitative Risk Management Practice |
| qrmix | Quantile Regression Mixture Models |
| qrmtools | Tools for Quantitative Risk Management |
| qrng | (Randomized) Quasi-Random Number Generators |
| qrNLMM | Quantile Regression for Nonlinear Mixed-Effects Models |
| qrnn | Quantile Regression Neural Network |
| qrsvm | SVM Quantile Regression with the Pinball Loss |
| QSARdata | Quantitative Structure Activity Relationship (QSAR) Data Sets |
| qtbase | Interface Between R and Qt |
| qte | Quantile Treatment Effects |
| qtl | Tools for Analyzing QTL Experiments |
| qtlbook | Datasets for the R/qtl Book |
| qtlc | Densitometric Analysis of Thin-Layer Chromatography Plates |
| qtlcharts | Interactive Graphics for QTL Experiments |
| qtlDesign | Design of QTL experiments |
| qtlhot | Inference for QTL Hotspots |
| qtlmt | Tools for Mapping Multiple Complex Traits |
| qtlnet | Causal Inference of QTL Networks |
| QTLRel | Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees |
| Qtools | Utilities for Quantiles |
| qtpaint | Qt-Based Painting Infrastructure |
| qtutils | Miscellaneous Qt-based utilities |
| QuACN | QuACN: Quantitative Analysis of Complex Networks |
| quad | Exact permutation moments of quadratic form statistics |
| quadmesh | Quadrangle Mesh |
| quadprog | Functions to solve Quadratic Programming Problems |
| quadrupen | Sparsity by Worst-Case Quadratic Penalties |
| qualCI | Causal Inference with Qualitative and Ordinal Information on Outcomes |
| QualInt | Test for Qualitative Interactions |
| qualityTools | Statistical Methods for Quality Science |
| qualpalr | Automatic Generation of Qualitative Color Palettes |
| qualtRics | Download Qualtrics Survey Data Directly into R |
| qualV | Qualitative Validation Methods |
| qualvar | Implements Indices of Qualitative Variation Proposed by Wilcox (1973) |
| Quandl | API Wrapper for Quandl.com |
| quantable | Streamline Descriptive Analysis of Quantitative Data Matrices |
| quantchem | Quantitative chemical analysis: calibration and evaluation of results |
| quanteda | Quantitative Analysis of Textual Data |
| quantification | Quantification of Qualitative Survey Data |
| QuantifQuantile | Estimation of Conditional Quantiles using Optimal Quantization |
| quantileDA | Quantile Classifier |
| QuantileGradeR | Quantile-Adjusted Restaurant Grading |
| quantmod | Quantitative Financial Modelling Framework |
| quantoptr | Algorithms for Quantile- And Mean-Optimal Treatment Regimes |
| QuantPsyc | Quantitative Psychology Tools |
| quantreg | Quantile Regression |
| quantreg.nonpar | Nonparametric Series Quantile Regression |
| quantregForest | Quantile Regression Forests |
| quantregGrowth | Growth Charts via Regression Quantiles |
| quantspec | Quantile-Based Spectral Analysis of Time Series |
| QuantTools | Enhanced Quantitative Trading Modelling |
| QuantumClone | Clustering Mutations using High Throughput Sequencing (HTS) Data |
| quarrint | Interaction Prediction Between Groundwater and Quarry Extension Using Discrete Choice Models and Artificial Neural Networks |
| QuasiSeq | Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood |
| questionr | Functions to Make Surveys Processing Easier |
| queuecomputer | Computationally Efficient Queue Simulation |
| queueing | Analysis of Queueing Networks and Models |
| quhomology | Calculation of Homology of Quandles, Racks, Biquandles and Biracks |
| QUIC | Regularized sparse inverse covariance matrix estimation |
| quickmapr | Quickly Map and Explore Spatial Data |
| quickmatch | Quick Generalized Full Matching |
| quickpsy | Fits Psychometric Functions for Multiple Groups |
| quickReg | Build Regression Models Quickly and Display the Results Using 'ggplot2' |
| quint | Qualitative Interaction Trees |
| quipu | Summary charts of micro satellite profiles for a set of biological samples |
| qut | Quantile Universal Threshold |
| qVarSel | Variables Selection for Clustering and Classification |
| qvcalc | Quasi Variances for Factor Effects in Statistical Models |
| QVM | Questionnaires Validation Module |
| qwraps2 | Quick Wraps 2 |
| QZ | Generalized Eigenvalues and QZ Decomposition |
| R.cache | Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up Computations |
| R.devices | Unified Handling of Graphics Devices |
| R.filesets | Easy Handling of and Access to Files Organized in Structured Directories |
| R.huge | Methods for Accessing Huge Amounts of Data [deprecated] |
| r.jive | Perform JIVE Decomposition for Multi-Source Data |
| R.matlab | Read and Write MAT Files and Call MATLAB from Within R |
| R.methodsS3 | S3 Methods Simplified |
| R.oo | R Object-Oriented Programming with or without References |
| R.rsp | Dynamic Generation of Scientific Reports |
| R.utils | Various Programming Utilities |
| R0 | Estimation of R0 and Real-Time Reproduction Number from Epidemics |
| R1magic | Compressive Sampling: Sparse Signal Recovery Utilities |
| R2admb | 'ADMB' to R Interface Functions |
| R2BayesX | Estimate Structured Additive Regression Models with 'BayesX' |
| R2Cuba | Multidimensional Numerical Integration |
| r2d2 | Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution |
| r2dRue | 2d Rain Use Efficience model |
| R2G2 | Converting R CRAN outputs into Google Earth |
| r2glmm | Computes R Squared for Mixed (Multilevel) Models |
| R2GUESS | Wrapper Functions for GUESS |
| R2HTML | HTML Exportation for R Objects |
| R2jags | Using R to Run 'JAGS' |
| r2lh | R to LaTeX and HTML |
| R2MLwiN | Running 'MLwiN' from Within R |
| R2OpenBUGS | Running OpenBUGS from R |
| R2PPT | Simple R Interface to Microsoft PowerPoint using rcom or RDCOMClient |
| R2STATS | A GTK GUI for fitting and comparing GLM and GLMM in R |
| r2stl | r2stl, R package for visualizing data using a 3D printer |
| R2SWF | Convert R Graphics to Flash Animations |
| R2ucare | Goodness-of-Fit Tests for Capture-Recapture Models |
| R2wd | Write MS-Word documents from R |
| R2WinBUGS | Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS' |
| R330 | An R package for Stats 330 |
| R4CouchDB | A R Convenience Layer for CouchDB 2.0 |
| R4dfp | 4dfp MRI Image Read and Write Routines |
| r4ss | R Code for Stock Synthesis |
| R6 | Classes with Reference Semantics |
| R6Frame | R6 Wrapper for Data Frames |
| RAC | R Package for Aqua Culture |
| race | Racing methods for the selection of the best |
| RAD | Fit RAD models to biological data |
| RADami | Phylogenetic Analysis of RADseq Data |
| RADanalysis | Normalization and Study of Rank Abundance Distributions |
| radar | Fundamental Formulas for Radar |
| radarchart | Radar Chart from 'Chart.js' |
| radiant | Business Analytics using R and Shiny |
| radiant.basics | Basics Menu for Radiant: Business Analytics using R and Shiny |
| radiant.data | Data Menu for Radiant: Business Analytics using R and Shiny |
| radiant.design | Design Menu for Radiant: Business Analytics using R and Shiny |
| radiant.model | Model Menu for Radiant: Business Analytics using R and Shiny |
| radiant.multivariate | Multivariate Menu for Radiant: Business Analytics using R and Shiny |
| radiomics | Radiomic Image Processing Toolbox |
| RadioSonde | Tools for plotting skew-T diagrams and wind profiles |
| radir | Inverse-Regression Estimation of Radioactive Doses |
| radmixture | Calculate Population Stratification |
| RadOnc | Analytical Tools for Radiation Oncology |
| RadTran | Radon and Soil Gas Transport in 2D Porous Medium |
| Radviz | Project Multidimensional Data in 2D Space |
| RAdwords | Loading Google Adwords Data into R |
| rafalib | Convenience Functions for Routine Data Exploration |
| rags2ridges | Ridge Estimation of Precision Matrices from High-Dimensional Data |
| ragt2ridges | Ridge Estimation of Vector Auto-Regressive (VAR) Processes |
| ragtop | Pricing Equity Derivatives with Extensions of Black-Scholes |
| RAHRS | Data Fusion Filters for Attitude Heading Reference System (AHRS) with Several Variants of the Kalman Filter and the Mahoney and Madgwick Filters |
| rainbow | Rainbow Plots, Bagplots and Boxplots for Functional Data |
| raincpc | Obtain and Analyze Rainfall Data from the Climate Prediction Center |
| rainfreq | Rainfall Frequency (Design Storm) Estimates from the US National Weather Service |
| rakeR | Easy Spatial Microsimulation (Raking) in R |
| rAltmetric | Retrieves Altmerics Data for Any Published Paper from 'Altmetric.com' |
| RAM | R for Amplicon-Sequencing-Based Microbial-Ecology |
| Ramble | Parser Combinator for R |
| Rambo | The Random Subgraph Model |
| rAmCharts | JavaScript Charts API Tool |
| ramcmc | Robust Adaptive Metropolis Algorithm |
| ramidst | An Interface to the AMIDST Toolbox for Data Stream Processing |
| ramify | Additional Matrix Functionality |
| RAMP | Regularized Generalized Linear Models with Interaction Effects |
| RAMpath | Structural Equation Modeling Using the Reticular Action Model (RAM) Notation |
| ramps | Bayesian Geostatistical Modeling with RAMPS |
| ramsvm | Reinforced Angle-Based Multicategory Support Vector Machines |
| randaes | Random number generator based on AES cipher |
| randgeo | Generate Random 'WKT' or 'GeoJSON' |
| RandMeta | Efficient Numerical Algorithm for Exact Inference in Meta Analysis |
| randNames | Package Provides Access to Fake User Data |
| random | True Random Numbers using RANDOM.ORG |
| random.polychor.pa | A Parallel Analysis with Polychoric Correlation Matrices |
| randomcoloR | Generate Attractive Random Colors |
| RandomFields | Simulation and Analysis of Random Fields |
| RandomFieldsUtils | Utilities for the Simulation and Analysis of Random Fields |
| randomForest | Breiman and Cutler's Random Forests for Classification and Regression |
| randomForest.ddR | Distributed 'randomForest' for Big Data using 'ddR' API |
| randomForestSRC | Random Forests for Survival, Regression and Classification (RF-SRC) |
| randomGLM | Random General Linear Model Prediction |
| randomizationInference | Flexible Randomization-Based Inference |
| randomizeBE | Create a Random List for Crossover Studies |
| randomizeR | Randomization for Clinical Trials |
| randomizr | Easy to Use Tools for Common Forms of Random Assignment and Sampling |
| randomLCA | Random Effects Latent Class Analysis |
| randomNames | Function for Generating Random Names and a Dataset |
| randomUniformForest | Random Uniform Forests for Classification, Regression and Unsupervised Learning |
| RandPro | Random Projection |
| randstr | Generate Random Strings |
| randtests | Testing randomness in R |
| randtoolbox | Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests |
| RandVar | Implementation of Random Variables |
| rangeBuilder | Occurrence Filtering, Geographic and Taxonomic Standardization and Generation of Species Range Polygons |
| rangeMapper | A Platform for the Study of Macro-Ecology of Life History Traits |
| rangemodelR | Mid-Domain Effect and Species Richness Patterns |
| ranger | A Fast Implementation of Random Forests |
| RankAggreg | Weighted rank aggregation |
| Rankcluster | Model-Based Clustering for Multivariate Partial Ranking Data |
| rankdist | Distance Based Ranking Models |
| rankFD | Rank-Based Tests for General Factorial Designs |
| rankhazard | Rank-Hazard Plots |
| RankingProject | The Ranking Project: Visualizations for Comparing Populations |
| RankResponse | Ranking Responses in a Single Response Question or a Multiple Response Question |
| RANKS | Ranking of Nodes with Kernelized Score Functions |
| RANN | Fast Nearest Neighbour Search (Wraps ANN Library) Using L2 Metric |
| RANN.L1 | Fast Nearest Neighbour Search (Wraps ANN Library) Using L1 Metric |
| RAP | Reversal Association Pattern |
| rapiclient | Dynamic OpenAPI/Swagger Client |
| RApiDatetime | R API Datetime |
| RapidPolygonLookup | Polygon lookup using kd trees |
| RAPIDR | Reliable Accurate Prenatal non-Invasive Diagnosis R package |
| RApiSerialize | R API Serialization |
| RAppArmor | Bindings to AppArmor and Security Related Linux Tools |
| rappdirs | Application Directories: Determine Where to Save Data, Caches, and Logs |
| rapport | A Report Templating System |
| rapportools | Miscellaneous (stats) helper functions with sane defaults for reporting |
| raptr | Representative and Adequate Prioritization Toolkit in R |
| RArcInfo | Functions to import data from Arc/Info V7.x binary coverages |
| rareGE | Testing Gene-Environment Interaction for Rare Genetic Variants |
| rareNMtests | Ecological and biogeographical null model tests for comparing rarefaction curves |
| rarhsmm | Regularized Autoregressive Hidden Semi Markov Model |
| Rarity | Calculation of Rarity Indices for Species and Assemblages of Species |
| rARPACK | Solvers for Large Scale Eigenvalue and SVD Problems |
| RaschSampler | Rasch Sampler |
| rasclass | Supervised Raster Image Classification |
| rase | Range Ancestral State Estimation for Phylogeography and Comparative Analyses |
| raster | Geographic Data Analysis and Modeling |
| rasterImage | An Improved Wrapper of Image() |
| rasterKernelEstimates | Kernel Based Estimates on in-Memory Raster Images |
| rasterVis | Visualization Methods for Raster Data |
| RateDistortion | Routines for Solving Rate-Distortion Problems |
| ratelimitr | Rate Limiting for R |
| rateratio.test | Exact rate ratio test |
| raters | A Modification of Fleiss' Kappa in Case of Nominal and Ordinal Variables |
| ratesci | Confidence Intervals for Comparisons of Binomial or Poisson Rates |
| RatingScaleReduction | Rating Scale Reduction Procedure |
| rationalfun | Manipulation of Rational Functions |
| RAtmosphere | Standard Atmospheric profiles |
| rattle | Graphical User Interface for Data Mining in R |
| rAverage | Parameter Estimation for the Averaging Model of Information Integration Theory |
| rAvis | Interface to the Bird-Watching Dataset Proyecto AVIS |
| raw | R Actuarial Workshops |
| rbamtools | Read and Write BAM (Binary Alignment) Files |
| rBayesianOptimization | Bayesian Optimization of Hyperparameters |
| rbcb | R Interface to Brazilian Central Bank Web Services |
| rbefdata | BEFdata R package |
| rbenchmark | Benchmarking routine for R |
| Rbent | Robust Bent Line Regression |
| rBeta2009 | The Beta Random Number and Dirichlet Random Vector Generating Functions |
| rbgm | Tools for 'Box Geometry Model' (BGM) Files and Topology for the Atlantis Ecosystem Model |
| rbhl | Interface to the 'Biodiversity' 'Heritage' Library |
| rbi | R Interface to LibBi |
| RbioRXN | Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction Data |
| rbiouml | Interact with BioUML Server |
| rbison | Interface to the 'USGS' 'BISON' 'API' |
| Rbitcoin | R & bitcoin integration |
| rbitcoinchartsapi | R Package for the BitCoinCharts.com API |
| Rblpapi | R Interface to 'Bloomberg' |
| rbmn | Handling Linear Gaussian Bayesian Networks |
| RBMRB | BMRB Data Access and Visualization |
| rbokeh | R Interface for Bokeh |
| Rborist | Extensible, Parallelizable Implementation of the Random Forest Algorithm |
| rbounds | Perform Rosenbaum bounds sensitivity tests for matched and unmatched data |
| RBPcurve | The Residual-Based Predictiveness Curve |
| rbugs | Fusing R and OpenBugs and Beyond |
| rbundler | Rbundler manages an application's dependencies systematically and repeatedly |
| rbvs | Ranking-Based Variable Selection |
| RCA | Relational Class Analysis |
| RCALI | Calculation of the Integrated Flow of Particles Between Polygons |
| rcanvec | Access and Plot CanVec and CanVec+ Data for Rapid Basemap Creation in Canada |
| Rcapture | Loglinear Models for Capture-Recapture Experiments |
| rCarto | This package builds maps with a full cartographic layout |
| RCassandra | R/Cassandra interface |
| rCAT | Conservation Assessment Tools |
| rCBA | CBA Classifier for R |
| rcbalance | Large, Sparse Optimal Matching with Refined Covariate Balance |
| rcbsubset | Optimal Subset Matching with Refined Covariate Balance |
| rcc | Parametric Bootstrapping to Control Rank Conditional Coverage |
| rccdates | Date Functions for Swedish Cancer Data |
| rccmisc | Miscellaneous R Functions for Swedish Regional Cancer Centers |
| rcdd | Computational Geometry |
| rcdk | Interface to the CDK Libraries |
| rcdklibs | The CDK Libraries Packaged for R |
| RCEIM | R Cross Entropy Inspired Method for Optimization |
| RcellData | Example Dataset for 'Rcell' Package |
| Rcereal | C++11 Header Files for 'cereal' |
| Rcgmin | Conjugate Gradient Minimization of Nonlinear Functions |
| rchallenge | A Simple Data Science Challenge System |
| rchess | Chess Move, Generation/Validation, Piece Placement/ Movement, and Check/Checkmate/Stalemate Detection |
| RchivalTag | Analyzing Archival Tagging Data |
| Rchoice | Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters |
| rChoiceDialogs | rChoiceDialogs collection |
| RChronoModel | Post-Processing of the Markov Chain Simulated by ChronoModel or Oxcal |
| rcicr | Reverse-Correlation Image-Classification Toolbox |
| RCircos | Circos 2D Track Plot |
| rclimateca | Fetch Climate Data from Environment Canada |
| RClimMAWGEN | RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather GENeretor): a package to generate time series of climate indices from RMAWGEN generations |
| rClinicalCodes | R tools for integrating with the www.clinicalcodes.org repository |
| RClone | Partially Clonal Populations Analysis |
| Rclusterpp | Linkable C++ clustering |
| rCMA | R-to-Java Interface for 'CMA-ES' |
| rcmdcheck | Run 'R CMD check' from 'R' and Capture Results |
| Rcmdr | R Commander |
| RcmdrMisc | R Commander Miscellaneous Functions |
| RcmdrPlugin.BCA | Rcmdr Plug-In for Business and Customer Analytics |
| RcmdrPlugin.BiclustGUI | 'Rcmdr' Plug-in GUI for Biclustering |
| RcmdrPlugin.coin | Rcmdr Coin Plug-In |
| RcmdrPlugin.depthTools | R commander Depth Tools Plug-In |
| RcmdrPlugin.DoE | R Commander Plugin for (industrial) Design of Experiments |
| RcmdrPlugin.doex | Rcmdr plugin for Stat 4309 course |
| RcmdrPlugin.EACSPIR | Plugin de R-Commander para el Manual 'EACSPIR' |
| RcmdrPlugin.EBM | Rcmdr Evidence Based Medicine Plug-in Package |
| RcmdrPlugin.EcoVirtual | Rcmdr EcoVirtual Plugin |
| RcmdrPlugin.epack | Rcmdr plugin for time series |
| RcmdrPlugin.Export | Export R Output to LaTeX or HTML |
| RcmdrPlugin.EZR | R Commander Plug-in for the EZR (Easy R) Package |
| RcmdrPlugin.FactoMineR | Graphical User Interface for FactoMineR |
| RcmdrPlugin.FuzzyClust | R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel) |
| RcmdrPlugin.GWRM | R Commander Plug-in for Fitting Generalized Waring Regression Models |
| RcmdrPlugin.HH | Rcmdr Support for the HH Package |
| RcmdrPlugin.IPSUR | An IPSUR Plugin for the R Commander |
| RcmdrPlugin.KMggplot2 | R Commander Plug-in for Data Visualization with 'ggplot2' |
| RcmdrPlugin.lfstat | Rcmdr Plug-in for Low Flow Analysis |
| RcmdrPlugin.MA | Graphical User Interface for Conducting Meta-Analyses in R |
| RcmdrPlugin.mosaic | Adds menu items to produce mosaic plots and assoc plots to Rcmdr |
| RcmdrPlugin.MPAStats | R Commander Plug-in for MPA Statistics |
| RcmdrPlugin.NMBU | R Commander Plug-in for University Level Applied Statistics |
| RcmdrPlugin.orloca | orloca Rcmdr Plug-in |
| RcmdrPlugin.PcaRobust | R Commander Plug-in for Robust Principal Component Analysis |
| RcmdrPlugin.plotByGroup | Rcmdr plots by group using lattice |
| RcmdrPlugin.pointG | Graphical POINT of view for questionnaire data Rcmdr Plug-In |
| RcmdrPlugin.qual | Rcmdr plugin for quality control course |
| RcmdrPlugin.RMTCJags | R MTC Jags 'Rcmdr' Plugin |
| RcmdrPlugin.ROC | Rcmdr Receiver Operator Characteristic Plug-In PACKAGE |
| RcmdrPlugin.sampling | Tools for sampling in Official Statistical Surveys |
| RcmdrPlugin.SCDA | Rcmdr Plugin for Designing and Analyzing Single-case Experiments |
| RcmdrPlugin.seeg | Rcmdr Plugin for seeg |
| RcmdrPlugin.SLC | SLC Rcmdr Plug-in |
| RcmdrPlugin.SM | Rcmdr Sport Management Plug-In |
| RcmdrPlugin.sos | Efficiently search the R help pages |
| RcmdrPlugin.steepness | Steepness Rcmdr Plug-in |
| RcmdrPlugin.survival | R Commander Plug-in for the 'survival' Package |
| RcmdrPlugin.TeachingDemos | Rcmdr Teaching Demos Plug-in |
| RcmdrPlugin.temis | Graphical Integrated Text Mining Solution |
| RcmdrPlugin.UCA | UCA Rcmdr Plug-in |
| RCMIP5 | Tools for Manipulating and Summarizing CMIP5 Data |
| Rcolombos | Interface to Colombos Compendia using the Exposed REST API |
| RColorBrewer | ColorBrewer Palettes |
| rcompanion | Functions to Support Extension Education Program Evaluation |
| RConics | Computations on Conics |
| rcorpora | A Collection of Small Text Corpora of Interesting Data |
| Rcplex | R Interface to CPLEX |
| RCPmod | Regions of Common Profiles Modelling with Mixtures-of-Experts |
| Rcpp | Seamless R and C++ Integration |
| Rcpp11 | R and C++11 |
| RcppAnnoy | 'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest Neighbors |
| RcppAPT | 'Rcpp' Interface to the APT Package Manager |
| RcppArmadillo | 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library |
| RcppBDT | Rcpp bindings for the Boost Date_Time library |
| RcppBlaze | 'Rcpp' Integration for the 'Blaze' High-Performance C++ Math Library |
| RcppCCTZ | 'Rcpp' Bindings for the 'CCTZ' Library |
| RcppClassic | Deprecated 'classic' Rcpp API |
| RcppClassicExamples | Examples using RcppClassic to interface R and C++ |
| RcppCNPy | Read-Write Support for 'NumPy' Files via 'Rcpp' |
| RcppDE | Global Optimization by Differential Evolution in C++ |
| RcppDL | Deep Learning Methods via Rcpp |
| RcppEigen | 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library |
| RcppExamples | Examples using 'Rcpp' to Interface R and C++ |
| RcppFaddeeva | 'Rcpp' Bindings for the 'Faddeeva' Package |
| RcppGetconf | 'Rcpp' Interface for Querying System Configuration Variables |
| RcppGSL | 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices |
| RcppHMM | Rcpp Hidden Markov Model |
| RcppHoney | Iterator Based Expression Template Expansion of Standard Operators |
| RcppMLPACK | 'Rcpp' Integration for the 'MLPACK' Library |
| RcppNumerical | 'Rcpp' Integration for Numerical Computing Libraries |
| RcppOctave | Seamless Interface to Octave – And Matlab |
| RcppParallel | Parallel Programming Tools for 'Rcpp' |
| RcppProgress | An Interruptible Progress Bar with OpenMP Support for C++ in R Packages |
| RcppQuantuccia | R Bindings to the 'Quantuccia' Header-Only Essentials of 'QuantLib' |
| RcppRedis | 'Rcpp' Bindings for 'Redis' using the 'hiredis' Library |
| RcppRoll | Efficient Rolling / Windowed Operations |
| RcppShark | R Interface to the Shark Machine Learning Library |
| RcppSMC | Rcpp Bindings for Sequential Monte Carlo |
| RcppStreams | 'Rcpp' Integration of the 'Streamulus' 'DSEL' for Stream Processing |
| RcppTOML | 'Rcpp' Bindings to Parser for Tom's Obvious Markup Language |
| RcppXts | Interface the xts API via Rcpp |
| RcppZiggurat | 'Rcpp' Integration of Different "Ziggurat" Normal RNG Implementations |
| rcqp | Interface to the Corpus Query Protocol |
| RCriteo | Loading Criteo Data into R |
| rcrossref | Client for Various 'CrossRef' 'APIs' |
| rcrypt | Symmetric File Encryption Using GPG |
| Rcsdp | R Interface to the CSDP Semidefinite Programming Library |
| rcss | Convex Switching Systems |
| Rcssplot | Styling of Graphics using Cascading Style Sheets |
| rCUR | CUR decomposition package |
| rcure | Robust Cure Models for Survival Analysis |
| RCurl | General Network (HTTP/FTP/...) Client Interface for R |
| Rd2md | Markdown Reference Manuals |
| Rd2roxygen | Convert Rd to 'Roxygen' Documentation |
| rda | Shrunken Centroids Regularized Discriminant Analysis |
| RDataCanvas | Basic Runtime Support for Datacanvas.io |
| rdatacite | 'DataCite' Client for 'OAI-PMH' Methods and their Search 'API' |
| rdatamarket | Data access API for DataMarket.com |
| rdataretriever | R Interface to the Data Retriever |
| rdd | Regression Discontinuity Estimation |
| rddensity | Manipulation Testing Based on Density Discontinuity |
| rddtools | Toolbox for Regression Discontinuity Design ('RDD') |
| rDEA | Robust Data Envelopment Analysis (DEA) for R |
| rdefra | Interact with the UK AIR Pollution Database from DEFRA |
| rdetools | Relevant Dimension Estimation (RDE) in Feature Spaces |
| rdian | Client Library for The Guardian |
| Rdice | A Collection of Functions to Experiment Dice Rolls |
| RDIDQ | It perform Quality check on data |
| RDieHarder | R interface to the dieharder RNG test suite |
| rdist | Calculate Pairwise Distances |
| Rdistance | Distance Sampling Analyses |
| rdlocrand | Local Randomization Methods for RD Designs |
| RDML | Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files |
| rDNA | R Bindings for the Discourse Network Analyzer |
| rDNAse | Generating Various Numerical Representation Schemes of DNA Sequences |
| rdnb | R Interface to the 'Deutsche Nationalbibliothek (German National Library) API' |
| RDocumentation | Integrate R with 'RDocumentation.org' |
| rdomains | Get the Category of Content Hosted by a Domain |
| RDota2 | An R Steam API Client for Valve's Dota2 |
| rdoxygen | Create Doxygen Documentation for Source Code |
| Rdpack | Update and Manipulate Rd Documentation Objects |
| rdpla | Client for the Digital Public Library of America ('DPLA') |
| rdrobust | Robust Data-Driven Statistical Inference in Regression-Discontinuity Designs |
| Rdrools | A Rules Engine for R Based on 'Drools' |
| Rdroolsjars | Rdrools JARs |
| rdrop2 | Programmatic Interface to the 'Dropbox' API |
| rdryad | Access for Dryad Web Services |
| RDS | Respondent-Driven Sampling |
| Rdsdp | R Interface to DSDP Semidefinite Programming Library |
| Rdsm | Threads Environment for R |
| RDSTK | An R wrapper for the Data Science Toolkit API |
| RDStreeboot | RDS Tree Bootstrap Method |
| Rdtq | Density Tracking by Quadrature |
| rDVR | The rDVR package allows you to start stop and save a video server from within R |
| rdwd | Select and Download Climate Data from 'DWD' (German Weather Service) |
| reactR | React Helpers |
| ReacTran | Reactive transport modelling in 1D, 2D and 3D |
| read.dbc | Read Data Stored in DBC (Compressed DBF) Files |
| readability | Calculate Readability Scores |
| readbitmap | Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG) |
| readBrukerFlexData | Reads Mass Spectrometry Data in Bruker *flex Format |
| readbulk | Read and Combine Multiple Data Files |
| reader | Suite of Functions to Flexibly Read Data from Files |
| readHAC | Read Acoustic HAC Format |
| readJDX | Import Data in the JCAMP-DX Format |
| readMLData | Reading Machine Learning Benchmark Data Sets in Different Formats |
| readMzXmlData | Reads Mass Spectrometry Data in mzXML Format |
| readODS | Read and Write ODS Files |
| readOffice | Read Text Out of Modern Office Files |
| readr | Read Rectangular Text Data |
| readstata13 | Import 'Stata' Data Files |
| readtext | Import and Handling for Plain and Formatted Text Files |
| readxl | Read Excel Files |
| RealVAMS | Multivariate VAM Fitting |
| reams | Resampling-Based Adaptive Model Selection |
| Rearrangement | Monotonize Point and Interval Functional Estimates by Rearrangement |
| REAT | Regional Economic Analysis Toolbox |
| REBayes | Empirical Bayes Estimation and Inference in R |
| rebird | R Client for the eBird Database of Bird Observations |
| rebmix | Finite Mixture Modeling, Clustering & Classification |
| rebus | Build Regular Expressions in a Human Readable Way |
| rebus.base | Core Functionality for the 'rebus' Package |
| rebus.datetimes | Date and Time Extensions for the 'rebus' Package |
| rebus.numbers | Numeric Extensions for the 'rebus' Package |
| rebus.unicode | Unicode Extensions for the 'rebus' Package |
| RECA | Relevant Component Analysis for Supervised Distance Metric Learning |
| recexcavAAR | 3D Reconstruction of Archaeological Excavations |
| rechonest | R Interface to Echo Nest API |
| ReCiPa | Redundancy Control in Pathways databases |
| recluster | Ordination Methods for the Analysis of Beta-Diversity Indices |
| recmap | Compute the Rectangular Statistical Cartogram |
| recoder | A Simple and Flexible Recoder |
| recommenderlab | Lab for Developing and Testing Recommender Algorithms |
| recommenderlabBX | Book-Crossing Dataset (BX) for 'recommenderlab' |
| recommenderlabJester | Jester Dataset for 'recommenderlab' |
| reconstructr | Session Reconstruction and Analysis |
| RecordLinkage | Record Linkage in R |
| Records | Record Values and Record Times |
| recosystem | Recommender System using Matrix Factorization |
| red | IUCN Redlisting Tools |
| reda | Recurrent Event Data Analysis |
| REdaS | Companion Package to the Book 'R: Einführung durch angewandte Statistik' |
| redcapAPI | R Interface to REDCap |
| REDCapR | Interaction Between R and REDCap |
| RedditExtractoR | Reddit Data Extraction Toolkit |
| reddPrec | Reconstruction of Daily Data - Precipitation |
| redist | Markov Chain Monte Carlo Methods for Redistricting Simulation |
| redland | RDF Library Bindings in R |
| rEDM | Applications of Empirical Dynamic Modeling from Time Series |
| Redmonder | Microsoft(r)-Inspired Color Palettes |
| redux | R Bindings to 'hiredis' |
| REEMtree | Regression Trees with Random Effects for Longitudinal (Panel) Data |
| ref | References for R |
| referenceIntervals | Reference Intervals |
| RefFreeEWAS | EWAS using Reference-Free DNA Methylation Mixture Deconvolution |
| refGenome | Gene and Splice Site Annotation Using Annotation Data from Ensembl and UCSC Genome Browsers |
| refimpact | API Wrapper for the UK REF 2014 Impact Case Studies Database |
| RefManageR | Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management |
| refnr | Refining Data Table Using a Set of Formulas |
| refset | Subsets with Reference Semantics |
| refund | Regression with Functional Data |
| refund.shiny | Interactive Plotting for Functional Data Analyses |
| refund.wave | Wavelet-Domain Regression with Functional Data |
| regclass | Tools for an Introductory Class in Regression and Modeling |
| RegClust | Cluster analysis via regression coefficients |
| reGenotyper | Detecting Mislabeled Samples in Genetic Data |
| REGENT | Risk Estimation for Genetic and Environmental Traits |
| regexPipes | Wrappers Around 'base::grep()' for Use with Pipes |
| regexr | Readable Regular Expressions |
| reghelper | Helper Functions for Regression Analysis |
| registry | Infrastructure for R Package Registries |
| reglogit | Simulation-Based Regularized Logistic Regression |
| regnet | Network-Based Regularization for Generalized Linear Models |
| regpro | Nonparametric Regression |
| regress | Gaussian Linear Models with Linear Covariance Structure |
| RegressionFactory | Expander Functions for Generating Full Gradient and Hessian from Single-Slot and Multi-Slot Base Distributions |
| regRSM | Random Subspace Method (RSM) for Linear Regression |
| regsel | Variable Selection and Regression |
| regsem | Performs Regularization on Structural Equation Models |
| regspec | Non-Parametric Bayesian Spectrum Estimation for Multirate Data |
| regsubseq | Detect and Test Regular Sequences and Subsequences |
| regtest | Regression testing |
| regtools | Regression Tools |
| rehh | Searching for Footprints of Selection using Haplotype Homozygosity Based Tests |
| rehh.data | Data Only: Searching for Footprints of Selection using Haplotype Homozygosity Based Tests |
| ReinforcementLearning | Model-Free Reinforcement Learning |
| ReIns | Functions from "Reinsurance: Actuarial and Statistical Aspects" |
| reinstallr | Search and Install Missing Packages |
| rel | Reliability Coefficients |
| rela | Item Analysis Package with Standard Errors |
| relabeLoadings | Relabel Loadings from MCMC Output for Confirmatory Factor Analysis |
| relaimpo | Relative importance of regressors in linear models |
| Relatedness | An Algorithm to Infer Relatedness |
| relations | Data Structures and Algorithms for Relations |
| relax | relax – R Editor for Literate Analysis and lateX |
| relaxnet | Relaxation of glmnet models (as in relaxed lasso, Meinshausen 2007) |
| relaxo | Relaxed Lasso |
| reldist | Relative Distribution Methods |
| relen | Compute Relative Entropy |
| relevent | Relational Event Models |
| Reliability | Functions for estimating parameters in software reliability models |
| ReliabilityTheory | Tools for Structural Reliability Analysis |
| reliaR | Package for some probability distributions |
| relimp | Relative Contribution of Effects in a Regression Model |
| relMix | Relationship Inference for DNA Mixtures |
| relSim | Relative Simulator |
| relsurv | Relative Survival |
| RelValAnalysis | Relative Value Analysis |
| rem | Relational Event Models (REM) |
| rematch | Match Regular Expressions with a Nicer 'API' |
| remindR | Insert and Extract "Reminders" from Function Comments |
| remix | Remix your data |
| rEMM | Extensible Markov Model for Modelling Temporal Relationships Between Clusters |
| remMap | Regularized Multivariate Regression for Identifying Master Predictors |
| remote | Empirical Orthogonal Teleconnections in R |
| remoter | Remote R: Control a Remote R Session from a Local One |
| remotes | R Package Installation from Remote Repositories, Including 'GitHub' |
| REndo | Fitting Linear Models with Endogenous Regressors using Latent Instrumental Variables |
| Renext | Renewal Method for Extreme Values Extrapolation |
| RenextGUI | GUI for Renext |
| rentrez | Entrez in R |
| Reol | R interface to the Encyclopedia of Life |
| ReorderCluster | Reordering the dendrogram according to the class labels |
| RepeatABEL | GWAS for Multiple Observations on Related Individuals |
| repeated | Non-Normal Repeated Measurements Models |
| RepeatedHighDim | Global tests for expression data of high-dimensional sets of molecular features |
| repfdr | Replicability Analysis for Multiple Studies of High Dimension |
| repijson | Tools for Handling EpiJSON (Epidemiology Data) Files |
| replicatedpp2w | Two-Way ANOVA-Like Method to Analyze Replicated Point Patterns |
| replicationInterval | Replication Interval Functions |
| replyr | Fluid Use of Big Data in R |
| repmis | Miscellaneous Tools for Reproducible Research |
| repo | A Data-Centered Data Flow Manager |
| repolr | Repeated Measures Proportional Odds Logistic Regression |
| ReporteRs | Microsoft Word and PowerPoint Documents Generation |
| ReporteRsjars | External jars required for package ReporteRs |
| reportr | A General Message and Error Reporting System |
| reportReg | An Easy Way to Report Regression Analysis |
| reportROC | An Easy Way to Report ROC Analysis |
| reportRx | Tools for automatically generating reproducible clinical report |
| reports | Assist the Workflow of Writing Academic Articles and Other Reports |
| reporttools | Generate LaTeX Tables of Descriptive Statistics |
| REPPlab | R Interface to 'EPP-Lab', a Java Program for Exploratory Projection Pursuit |
| repr | Serializable Representations |
| represent | Determine the representativity of two multidimensional data sets |
| represtools | Reproducible Research Tools |
| reprex | Prepare Reproducible Example Code for Sharing |
| reproducer | Reproduce Statistical Analyses and Meta-Analyses |
| REPTILE | Regulatory DNA Element Prediction |
| REQS | R/EQS Interface |
| request | High Level 'HTTP' Client |
| requireR | R Source Code Modularizer |
| rerddap | General Purpose Client for 'ERDDAP' Servers |
| REREFACT | Reordering and/or Reflecting Factors for Simulation Studies with Exploratory Factor Analysis |
| reReg | Recurrent Event Regression |
| resample | Resampling Functions |
| resampledata | Data Sets for Mathematical Statistics with Resampling in R |
| resemble | Regression and Similarity Evaluation for Memory-Based Learning in Spectral Chemometrics |
| reservoir | Tools for Analysis, Design, and Operation of Water Supply Storages |
| reshape | Flexibly Reshape Data |
| reshape2 | Flexibly Reshape Data: A Reboot of the Reshape Package |
| reshapeGUI | A GUI for the reshape2 and plyr packages |
| ResistorArray | electrical properties of resistor networks |
| ResourceSelection | Resource Selection (Probability) Functions for Use-Availability Data |
| respirometry | Tools for Conducting Respirometry Experiments |
| RESS | Integrates R and Essentia |
| REST | RcmdrPlugin Easy Script Templates |
| restfulr | R Interface to RESTful Web Services |
| restimizeapi | Functions for Working with the 'www.estimize.com' Web Services |
| restlos | Robust Estimation of Location and Scatter |
| restrictedMVN | Multivariate Normal Restricted by Affine Constraints |
| restriktor | Restricted Statistical Estimation and Inference for Linear Models |
| resumer | Build Resumes with R |
| rethinker | RethinkDB Client |
| reticulate | R Interface to Python |
| retimes | Reaction Time Analysis |
| retistruct | Retinal Reconstruction Program |
| reutils | Talk to the NCBI EUtils |
| reval | Repeated Function Evaluation for Sensitivity Analysis |
| revdbayes | Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis |
| revealedPrefs | Revealed Preferences and Microeconomic Rationality |
| revealjs | R Markdown Format for 'reveal.js' Presentations |
| RevEcoR | Reverse Ecology Analysis on Microbiome |
| revgeo | Reverse Geocoding with the Photon Geocoder for OpenStreetMap and Google Maps |
| reweight | Adjustment of Survey Respondent Weights |
| rex | Friendly Regular Expressions |
| Rexperigen | R Interface to Experigen |
| rexpokit | R wrappers for EXPOKIT; other matrix functions |
| Rfacebook | Access to Facebook API via R |
| Rfast | Fast R Functions |
| RFc | Client for FetchClimate Web Service |
| rFDSN | Get Seismic Data from the International Federation of Digital Seismograph Networks |
| rFerns | Random Ferns Classifier |
| RFGLS | Rapid Feasible Generalized Least Squares |
| RFgroove | Importance Measure and Selection for Groups of Variables with Random Forests |
| rfigshare | An R Interface to 'figshare' |
| RFinanceYJ | RFinanceYJ |
| RFinfer | Inference for Random Forests |
| rfishbase | R Interface to 'FishBase' |
| rfisheries | 'Programmatic Interface to the 'openfisheries.org' API' |
| Rfit | Rank Estimation for Linear Models |
| rflann | Basic R Interface to the 'FLANN' C++ Library |
| RFLPtools | Tools to analyse RFLP data |