olfactorybulb.slicebuilder¶
This is the main class where NEURON cells are imported into Blender, where they are positioned and oriented within bulbar layers. Transformed cell coordinates are saved for later instatiation by NEURON during simulations. Synapse locations are identified and saved into synapse set files.
-
class
olfactorybulb.slicebuilder.blender.
SliceBuilderBlender
(odors=['Apple'], slice_object_name='DorsalColumnSlice', max_mcs=10, max_tcs=None, max_gcs=300, mc_particles_object_name='2 ML Particles', tc_particles_object_name='1 OPL Particles', gc_particles_object_name='4 GRL Particles', glom_particles_object_name='0 GL Particles', glom_layer_object_name='0 GL', outer_opl_object_name='1 OPL-Outer', inner_opl_object_name='1 OPL-Inner')[source]¶ Bases:
object
-
__init__
(odors=['Apple'], slice_object_name='DorsalColumnSlice', max_mcs=10, max_tcs=None, max_gcs=300, mc_particles_object_name='2 ML Particles', tc_particles_object_name='1 OPL Particles', gc_particles_object_name='4 GRL Particles', glom_particles_object_name='0 GL Particles', glom_layer_object_name='0 GL', outer_opl_object_name='1 OPL-Outer', inner_opl_object_name='1 OPL-Inner')[source]¶ Prepares the slice builder
- Parameters
odors – A list of odors whose glomeruli to include (e.g. [‘Apple’, ‘Mint’]), use ‘all’ for all gloms.
slice_object_name – The name of the Blender mesh that defines the shape of the virtual slice
max_mcs – The maximum number of MCs to include in the model
max_tcs – Maximum number of TCs. Use None to use mouse MC-TC ratio.
max_gcs – Maximum number of GCs. Use None to use mouse MC-GC ratio.
mc_particles_object_name – The name of the Blender object that defines MC soma locations
tc_particles_object_name – The name of the Blender object that defines TC soma locations
gc_particles_object_name – The name of the Blender object that defines GC soma locations
glom_particles_object_name – The name of the Blender object that defines glomerulus locations
glom_layer_object_name – The name of the Blender object that defines the geometry of glomerular layer
outer_opl_object_name – The name of the Blender object that defines the outer boundary of the OPL layer
inner_opl_object_name – The name of the Blender object that defines the inner boundary of the OPL layer
-
add_gc
(gc_pt)[source]¶ Instantiates, places, and orients a granule cell in the granule cell layer
- Parameters
gc_pt – XYZ array of GC soma location
-
add_mc
(mc_pt)[source]¶ Instantiates in NEURON, places, and orients a mitral cell within the mitral cell layer and confines its lateral dendrites to the curvature of the surrounding internal part of the outer plexiform layer.
- Parameters
mc_pt – A dict whose ‘loc’ key contains a numpy array of xyz coordinates of the cell soma
-
add_tc
(tc_pt)[source]¶ Similar to add_mc(pt). Instantiates, places, and orients a tufted cell model and confines its lateral dendrites to the outer portion of the outer plexiform layer.
- Parameters
tc_pt – A dict with ‘loc’ that contains a numpy array of xyz coordinates of the TC soma
-
build
(seed=0)[source]¶ Positions MC/TC/GC models within the OB layers, identifies synapse locations, and saves the model for later simulation in NEURON
- Parameters
seed – The random seed to use (to assist reproducibility)
-
clear_slice_files
()[source]¶ Deletes previously saved virtual slice .json files from the slice directory (e.g. olfactorybulb/slices/DorsalColumnSlice/.json)
-
static
closest_point_on_object
(global_pt, mesh_obj)[source]¶ Gets the closest point and distance of a mesh object from a specified point
- Parameters
global_pt – The point from which to measure distance
mesh_obj – A mesh object
- Returns
A tuple with an xyz numpy array of the closest point and distance to it
-
confine_dends
(group_name, start_layer_name, end_layer_name, max_angle, height_start, height_end)[source]¶ Confines the lateral dendrits of cells in a group to follow the curvature between two layers
Height_start and height_end specify fractions that define the corridor between the layers to which the dendrites should be confined. E.g. To confine the dendrites in the halfway between the two layers, closer to the start layer, set height_start and height_end to 0 and 0.5. Set them to 0.5 and 1.0 to confine to the halfway that is closer to the end region. 1.0 corresponds to the local distance between the two layers.
The two layers should be ‘locally’ parallel. E.g. two planes, or two concentric spheres. In OB model case, the OB layers are complex shapes, but concentric-like.
- Parameters
group_name – The name of the group of cells to confine
start_layer_name – The name of the first confinement layer
end_layer_name – The name of the second confinement layer
max_angle – The maximum angle that a dendritic branch can rotate to be confined between layers
height_start – Fraction between 0-1
height_end – Fraction between 0-1
-
create_synapse_set
(group_from, group_to)[source]¶ Defines a synapse set between two BlenderNEURON groups of cells
- Parameters
group_from – One of ‘MCs’, ‘TCs’, ‘GCs’
group_to – One of ‘MCs’, ‘TCs’, ‘GCs’
-
static
dist_to
(targets_array, loc)[source]¶ Returns an array of distances to the specified list of points from a given point
- Parameters
targets_array – The array of xzy target coordinates
loc – The target coordinate
- Returns
An array of distances
-
dist_to_gloms
(loc)[source]¶ Returns an array of distances to glomeruli from a given location
- Parameters
loc – XYZ coordinate
- Returns
Distances to glomeruli
-
extend_apic
(apic_start, apic_end, apic_glom_loc)[source]¶ TODO: This is probably unused, leftover from an earlier version.
- Parameters
apic_start –
apic_end –
apic_glom_loc –
- Returns
-
find_closest_glom
(cell_loc)[source]¶ Finds the closest glomerulus to the specified coordinates
- Parameters
cell_loc – A numpy array of xyz coordinates
- Returns
A tuple with the location of the closest glomerulus and distance to it
-
find_matching_glom
(cell_loc, cell_model_info)[source]¶ Finds a glomerulus that is approximately the same distance from the soma as the length of the cells apical dendrite
- Parameters
cell_loc – A numpy xyz array with coordinates
cell_model_info – Cell model metadata dict with ‘apical_dendrite_reach’ key that contains the apical dendrite length
- Returns
The xyz location and the id of the matching glomerulus
-
static
get_apic_lengths
(base_models)[source]¶ Gets the apical dendrite lengths of the specified base models
- Parameters
base_models – List with metadata of base cell models
- Returns
A numpy array of apical dendrite lengths
-
get_cell_base_model_info
()[source]¶ Gets metadata info about each of the base (untransformed) MC, TC, and GC cell models
-
get_cell_locations
()[source]¶ Identifies the locations of glomeruli, mcs, tcs, and gcs that are contained by the virtual slice.
-
get_key_mctc_section_objects
(base_model_dict, base_class, instance_name)[source]¶ Gets the blender objects of soma, apical dendrite start (base), and apical dendrite end (tuft) sections
- Parameters
base_model_dict – A dicttionary of base cell model metadata info
base_class – The name of a base cell class
instance_name – The name of blender object of cell soma section
- Returns
Blender objects of soma, apical dendrite start, and apical dendrite end
-
get_locs_within_slice
(particle_obj_name, slice_obj_name, allowed_particles=None, limit=None)[source]¶ Gets a list of particle locations that are contained by a slice object
- Parameters
particle_obj_name – A blender particle object
slice_obj_name – A blender mesh object that represents the virtual slice
allowed_particles – A list of particle ids that are allowed to be included. If None, not restricted.
limit – A list of dicts with ids and locs of matching points
- Returns
-
get_longest_apic_model
(base_model_dict)[source]¶ Returns the metadata of the base cell model that has that longest apical dendrite
- Parameters
base_model_dict – The dict of base cell model metadatas
- Returns
A metadata object
-
get_opl_distance_info
(cell_loc, pts)[source]¶ Computes distances to and the closest point of an outer plexiform layer to a given point
- Parameters
cell_loc – The xyz location of a point
pts – The list of xyz coordinates of the OPL layer mesh
- Returns
A tuple with closest location on the layer, the distance to that point, and a list of distances to all OPL points
-
get_opl_locs
(opl_name, slice_obj_name)[source]¶ Gets the coordinates of inner or outer boundaries of the OPL layer that are contained by the virtual slice
-
get_random_model
(base_models, longer_idxs)[source]¶ Given a list of indices stored in longer_idxs, selects a random element of base_models
- Parameters
base_models – A list of base cell models
longer_idxs – A list of indices from which to pick a random index
- Returns
A random cell model
-
globalize_slice
()[source]¶ Converts all points of the slice object to global coordinates (relative to scene origin)
-
import_instance
(instance_name, group_name)[source]¶ Imports and shows a cell instantiated in NEURON into Blender using a BlenderNEURON group
- Parameters
instance_name – The name of the cell model to import (as named by NEURON)
group_name – The name of the group to associate the cell with
-
static
is_inside
(target_pt_global, mesh_obj, tolerance=1)[source]¶ Determines if a target point is inside a mesh
- Parameters
target_pt_global – Target xyz point, in global coordinates
mesh_obj – Target mesh object
tolerance – A tolerance in degrees to account for rounding error in detecting points inside. <=1 is generally sufficient.
- Returns
True or False
-
link_cell_to_glom
(instance_name, matching_glom_id)[source]¶ Adds a cell instance to a list of cells that belong to the specified glomerulus
- Parameters
instance_name – The name of the cell as returned by NEURON
matching_glom_id – The id of the glomerulus, with which to associate the cell
-
property
neuron
¶ Returns the client class that communicates with NEURON via methods defined in olfactorybulb.slicebuilder.nrn
-
property
node
¶ Returns the BlenderNEURON node that runs within Blender
-
parent
(obj, parent)[source]¶ Make one blender object a parent of another
- Parameters
obj – The child object
parent – The child’s parent object
-
position_orient_align_mctc
(soma, apic_start, apic_end, loc, closest_glom_loc, apic_glom_loc)[source]¶ TODO: this appears to have the same/similar function as self.position_orient_cell. This may be redundant code.
- Parameters
soma –
apic_start –
apic_end –
loc –
closest_glom_loc –
apic_glom_loc –
- Returns
-
position_orient_cell
(soma, apic_end, soma_loc, closest_glom_loc)[source]¶ Position cell at a location, rotate it around its apical dendrite axis, and rotate it around the soma so it’s apical dendrite ‘points’ towards the closest glomerulus location.
- Parameters
soma – Blender object that holds the soma section
apic_end – Blender object that holds the apical dendrite (furthest apical section on/near apical axis)
soma_loc – The desired cell soma location
closest_glom_loc – The location of the closest glomerulus
-
save_transform
(group_name, instance_name)[source]¶ Saves trnsformed cells in a cell group to a NEURON compatible file
- Parameters
group_name – The name of the BlenderNEURON cell group to save
instance_name – The name of the file to save. Can be the name of the cell soma segment.
-
property
slice_dir
¶ Returns the path to the directory where virtual slice cell and synapse files will be saved
-
-
olfactorybulb.slicebuilder.blender.
auto_start
(scene)[source]¶ A Blender startup script that starts the SliceBuilder on Blender startup
-
class
olfactorybulb.slicebuilder.nrn.
SliceBuilderNRN
[source]¶ Bases:
object
Establishes an interface for Blender to load cells into NEURON
-
__init__
()[source]¶ Starts NEURON, creates a BlenderNEURON node, and adds methods to the node that Blender can call.
-
create_cell
(type, class_name)[source]¶ Creates an instance of a base cell model in NEURON.
- Parameters
type – One of ‘MC’, ‘TC’, or ‘GC’
class_name – One of the cell classes in prev_ob_models.Birgiolas2020.isolated_cells
- Returns
The name that NEURON gives to the cell soma segment e.g. ‘MC5[0].soma’
-
get_base_model_info
()[source]¶ Returns metadata information from the model database about each base cell model.
A base cell model is a NEURON model of a cell with a representative morphology centered at the origin and rotated so the apical dendrites are aligned with the Z axis.
The based models are positioned within layers, and oriented appropriately. MC and TC lateral dendrites are also modified so they follow the curvature of the external plexiform layer.
- Returns
A tuple of mc, tc, and gc dictionaries of metadata
-


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royalty-free, fully-paid, perpetual, irrevocable, transferable, and
fully sublicensable right to use the Feedback in any manner and for
any purpose.
12. Privacy Policy; Additional Terms
12.1
Privacy Policy. Please read the BV Privacy Policy carefully for
information relating to our collection, use, storage and disclosure of
your personal information. The BV Privacy Policy is hereby
incorporated by reference into, and made a part of, these Terms.
12.2 Additional Terms. Your use of the Service is subject to any and
all additional terms, policies, rules, or guidelines applicable to the
Service or certain features of the Service that we may post on or link
to on the Service (the “Additional Terms”), such as end-user license
agreements for any downloadable applications that we may offer, or
rules applicable to particular features or content on the Service,
subject to Section 13 below. All Additional Terms are hereby
incorporated by reference into, and made a part of, these Terms.
13. Modification of these Terms. We reserve the right, at our
discretion, to change these Terms on a going-forward basis at any
time. Please check these Terms periodically for changes. In the event
that a change to these Terms materially modifies your rights or
obligations, we will make reasonable efforts to notify you of that
change. We may provide that notice by posting on the Service, by
sending an email to any address you may have used to register for an
account, or through other mechanisms. Our changed Terms will
automatically take effect 60 days after it is made available through
the Site. If you do not accept the changed Terms, you may terminate
your access to and use of the Service. Your continued use of the
Service after the changed Terms have become effective indicates that
you have read, understood and agreed to the current version of the
Terms. Notwithstanding the foregoing, any disputes arising under these
Terms will be resolved in accordance with the Terms in effect that the
time the dispute arose.
14. Ownership; Proprietary Rights. The
Service is owned and operated by BV. The visual interfaces,
graphics, design, compilation, information, data, computer code
(including source code or object code), products, software, services,
and all other elements of, or provided or made available on or
through, the Service (the “Materials”) are protected by all relevant
intellectual property and proprietary rights and applicable laws. All
Materials are the property of BV or our third-party
licensors. Except as expressly authorized by BV, you may not make
use of the Materials. BV reserves all rights to the Materials not
granted expressly in these Terms.
15. Indemnity. You agree that
you will be responsible for your use of the Service, and you agree to
defend, indemnify, and hold harmless BV and its officers, directors,
employees, consultants, affiliates, subsidiaries and agents
(collectively, the “BV Entities”) from and against any and all
claims, liabilities, damages, losses, and expenses, including
reasonable attorneys’ fees and costs, arising out of or in any way
connected with (i) your access to, use of, or alleged use of the
Service; (ii) your violation of these Terms or any representation,
warranty, or agreements referenced herein, or any applicable law or
regulation; (iii) your violation of any third-party right, including
without limitation any intellectual property right, publicity,
confidentiality, property or privacy right; or (iv) any disputes or
issues between you and any third party. We reserve the right, at our
own expense, to assume the exclusive defense and control of any matter
otherwise subject to indemnification by you (and without limiting your
indemnification obligations with respect to that matter), and in that
case, you agree to cooperate with our defense of that claim.
16.   THE BV
ENTITIES DO NOT WARRANT THAT THE SERVICE OR ANY PART THEREOF, OR ANY
MATERIALS OR CONTENT OFFERED ON OR THROUGH THE SERVICE, WILL BE
UNINTERRUPTED, SECURE, OR FREE OF ERRORS, VIRUSES, OR OTHER HARMFUL
COMPONENTS, AND DO NOT WARRANT THAT ANY OF THE FOREGOING WILL BE
qCORRECTED.

SOME JURISDICTIONS MAY PROHIBIT A
DISCLAIMER OF WARRANTIES AND YOU MAY HAVE OTHER RIGHTS THAT VARY FROM
JURISDICTION TO JURISDICTION.
17.

SOME JURISDICTIONS DO NOT ALLOW THE EXCLUSION OR
LIMITATION OF LIABILITY FOR CONSEQUENTIAL OR INCIDENTAL
DAMAGES. ACCORDINGLY, THE ABOVE LIMITATION MAY NOT APPLY TO YOU.
EACH PROVISION OF THESE TERMS THAT PROVIDES FOR A LIMITATION OF
LIABILITY, DISCLAIMER OF WARRANTIES, OR EXCLUSION OF DAMAGES IS TO
ALLOCATE THE RISKS UNDER THESE TERMS BETWEEN THE PARTIES.  EACH OF THESE PROVISIONS IS SEVERABLE AND INDEPENDENT OF
ALL OTHER PROVISIONS OF THESE TERMS. THE LIMITATIONS IN THIS SECTION
15 WILL APPLY EVEN IF ANY LIMITED REMEDY FAILS OF ITS ESSENTIAL
PURPOSE.
18. Governing Law. These Terms shall be governed by the
laws of the State of Tennessee without regard to conflict of law
principles. To the extent that any lawsuit or court proceeding is
permitted hereunder, you and BV agree to submit to the personal and
exclusive jurisdiction of the state courts and federal courts located
within Knox County, Tennessee for the purpose of litigating all
disputes.
19. Dispute Resolution and Arbitration
19.1
Generally. In the interest of resolving disputes between you and BV in
the most expedient and cost effective manner, you and BV agree that
any and all disputes arising in connection with these Terms shall be
resolved by binding arbitration. Arbitration is more informal than a
lawsuit in court. Arbitration uses a neutral arbitrator instead of a
judge or jury, may allow for more limited discovery than in court, and
can be subject to very limited review by courts. Arbitrators can award
the same damages and relief that a court can award. Our agreement to
arbitrate disputes includes, but is not limited to all claims arising
out of or relating to any aspect of these Terms, whether based in
contract, tort, statute, fraud, misrepresentation or any other legal
theory, and regardless of whether the claims arise during or after the
termination of these Terms.  Notwithstanding subsection 18.1, we both agree that
nothing herein will be deemed to waive, preclude, or otherwise limit
either of our right to (i) bring an individual action in small claims
court, (ii) pursue enforcement actions through applicable federal,
state, or local agencies where such actions are available, (iii) seek
injunctive relief in a court of law, or (iv) to file suit in a court
of law to address intellectual property infringement claims.
19.3
Arbitrator. Any arbitration between you and BV will be governed by the
Commercial Dispute Resolution Procedures and the Supplementary
Procedures for Consumer Related Disputes (collectively, “AAA Rules”)
of the American Arbitration Association (“AAA”), as modified by these
Terms, and will be administered by the AAA. The AAA Rules and filing
forms are available online at www.adr.org, by calling the AAA at
1-800-778-7879, or by contacting BV.
19.4 Notice; Process. A
party who intends to seek arbitration must first send a written notice
of the dispute to the other, by certified mail or Federal Express
(signature required), or in the event that we do not have a physical
address on file for you, by electronic mail (“Notice”). BV’s address
for Notice is: Bruiser Ventures, LLC., PO Box 1036 1237 E WEISGARBER
RD RM 9831 KNOXVILLE, TN 37950-9831. The Notice must (i) describe the
nature and basis of the claim or dispute; and (ii) set forth the
specific relief sought (“Demand”). We agree to use good faith efforts
to resolve the claim directly, but if we do not reach an agreement to
do so within 30 days after the Notice is received, you or BV may
commence an arbitration proceeding. During the arbitration, the amount
of any settlement offer made by you or BV shall not be disclosed to
the arbitrator until after the arbitrator makes a final decision and
award, if any. In the event our dispute is finally resolved through
arbitration in your favor, BV shall pay you (i) the amount awarded by
the arbitrator, if any, (ii) the last written settlement amount
offered by BV in settlement of the dispute prior to the arbitrator’s
award; or (iii) $1,000.00, whichever is greater.
19.5 Fees. In
the event that you commence arbitration in accordance with these
Terms, BV will reimburse you for your payment of the filing fee,
unless your claim is for greater than $10,000, in which case the
payment of any fees shall be decided by the AAA Rules. Any arbitration
hearings will take place at a location to be agreed upon in Knox
County, Tennessee, provided that if the claim is for $10,000 or less,
you may choose whether the arbitration will be conducted (i) solely on
the basis of documents submitted to the arbitrator; (ii) through a
non-appearance based telephonic hearing; or (iii) by an in-person
hearing as established by the AAA Rules in the county (or parish) of
your billing address. If the arbitrator finds that either the
substance of your claim or the relief sought in the Demand is
frivolous or brought for an improper purpose (as measured by the
standards set forth in Federal Rule of Civil Procedure 11(b)), then
the payment of all fees will be governed by the AAA Rules. In that
case, you agree to reimburse BV for all monies previously disbursed by
it that are otherwise your obligation to pay under the AAA
Rules. Regardless of the manner in which the arbitration is conducted,
the arbitrator shall issue a reasoned written decision sufficient to
explain the essential findings and conclusions on which the decision
and award, if any, are based. The arbitrator may make rulings and
resolve disputes as to the payment and reimbursement of fees or
expenses at any time during the proceeding and upon request from
either party made within 14 days of the arbitrator’s ruling on the
merits.
19.6 No Class Actions. YOU AND BV AGREE THAT EACH MAY
BRING CLAIMS AGAINST THE OTHER ONLY IN YOUR OR ITS INDIVIDUAL CAPACITY
AND NOT AS A PLAINTIFF OR CLASS MEMBER IN ANY PURPORTED CLASS OR
REPRESENTATIVE PROCEEDING. Further, unless both you and BV agree
otherwise, the arbitrator may not consolidate more than one person’s
claims, and may not otherwise preside over any form of a
representative or class proceeding.
19.7 Modifications. In the
event that BV makes any future change to this arbitration provision
(other than a change to BV’s address for Notice), you may reject that
change by sending us written notice within 30 days of the change to
BV’s address for Notice, in which case your account with BV shall be
immediately terminated and this arbitration provision, as in effect
immediately prior to the amendments you reject shall survive.
19.8 Enforceability. If Subsection 18.6 is found to be unenforceable
or if the entirety of this Section 19 is found to be unenforceable,
then the entirety of this Section 19 shall be null and void and, in
that case, the parties agree that the exclusive jurisdiction and venue
described in Section 18 shall govern any action arising out of or
related to these Terms.
20. Consent to Electronic
Communications. By using the Service, you consent to receiving certain
electronic communications from us as further described in our Privacy
Policy. Please read our Privacy Policy to learn more about your
choices regarding our electronic communications practices. You agree
that any notices, agreements, disclosures, or other communications
that we send to you electronically will satisfy any legal
communication requirements, including that these communications be in
writing.
21. Miscellaneous. These Terms, together with the
Privacy Policy and any other agreements expressly incorporated by
reference herein, constitute the entire and exclusive understanding
and agreement between you and BV regarding your use of and access to
the Service, and except as expressly permitted above may be amended
only by a written agreement signed by authorized representatives of
all parties to these Terms. You may not assign or transfer these Terms
or your rights hereunder, in whole or in part, by operation of law or
otherwise, without our prior written consent. We may assign these
Terms at any time without notice. The failure to require performance
of any provision will not affect our right to require performance at
any time thereafter, nor shall a waiver of any breach or default of
these Terms or any provision of these Terms constitute a waiver of any
subsequent breach or default or a waiver of the provision itself. Use
of section headers in these Terms is for convenience only and shall
not have any impact on the interpretation of particular provisions. In
the event that any part of these Terms is held to be invalid or
unenforceable, the unenforceable part shall be given effect to the
greatest extent possible and the remaining parts will remain in full
force and effect.
22. Contact Information. The Service is offered
by Bruiser Ventures, LLC., located at PO Box 1036 1237 E WEISGARBER RD
RM 9831 KNOXVILLE, TN 37950-9831. You may contact BV by sending
correspondence to the foregoing address or by emailing us at
<EMAIL_ADDRESS>If you are a California resident, you
may have these Terms mailed to you electronically by sending a letter
to the foregoing address with your electronic mail address and a
request for these Terms.


|
Cheetah API
|
Public Member Functions | |
| def | __init__ (self, machine_name, scheduler_name, runner_name, output_directory, num_codes) |
| def | create_group_directory (self, campaign_name, app_dir, group_name, runs, max_nprocs, nodes, launch_mode, component_subdirs, walltime, node_exclusive, timeout, machine, sosd_path=None, sos_analysis_path=None, tau_config=None, kill_on_partial_failure=False, run_post_process_script=None, run_post_process_stop_on_failure=False, scheduler_options=None, run_dir_setup_script=None) |
| def | read_jobid (self) |
Public Attributes | |
| machine_name | |
| scheduler_name | |
| runner_name | |
| output_directory | |
| num_codes | |
Static Public Attributes | |
| name = None | |
| string | submit_script_name = 'submit.sh' |
| string | wait_script_name = 'wait.sh' |
| string | status_script_name = 'status.sh' |
| string | submit_out_name = 'codar.cheetah.submit-output.txt' |
| string | run_command_name = 'codar.cheetah.run-params.txt' |
| string | run_json_name = 'codar.cheetah.run-params.json' |
| string | run_out_name = 'codar.cheetah.run-output.txt' |
| batch_script_name = None | |
| string | batch_walltime_name = 'codar.cheetah.walltime.txt' |
| string | jobid_file_name = 'codar.cheetah.jobid.txt' |
Class to represent a single batch job or submission script. It's job is to take a scheduler group and produce a script for executing all runs within the scheduler group with the indicated scheduler parameters. The launcher may take configuration parameters to specify which scheduler/ runner to use, but there is no longer an object model for schedulers and runners.
Definition at line 28 of file launchers.py.
| def codar.cheetah.launchers.Launcher.__init__ | ( | self, | |
| machine_name, | |||
| scheduler_name, | |||
| runner_name, | |||
| output_directory, | |||
| num_codes | |||
| ) |
Definition at line 54 of file launchers.py.
| def codar.cheetah.launchers.Launcher.create_group_directory | ( | self, | |
| campaign_name, | |||
| app_dir, | |||
| group_name, | |||
| runs, | |||
| max_nprocs, | |||
| nodes, | |||
| launch_mode, | |||
| component_subdirs, | |||
| walltime, | |||
| node_exclusive, | |||
| timeout, | |||
| machine, | |||
sosd_path = None , |
|||
sos_analysis_path = None , |
|||
tau_config = None , |
|||
kill_on_partial_failure = False , |
|||
run_post_process_script = None , |
|||
run_post_process_stop_on_failure = False , |
|||
scheduler_options = None , |
|||
run_dir_setup_script = None |
|||
| ) |
Copy scripts for the appropriate scheduler to group directory, and write environment configuration. Returns required number of nodes, which will be calculated if the passed nodes is None
Definition at line 72 of file launchers.py.
| def codar.cheetah.launchers.Launcher.read_jobid | ( | self | ) |
Definition at line 400 of file launchers.py.
|
static |
Definition at line 49 of file launchers.py.
|
static |
Definition at line 50 of file launchers.py.
|
static |
Definition at line 51 of file launchers.py.
| codar.cheetah.launchers.Launcher.machine_name |
Definition at line 55 of file launchers.py.
|
static |
Definition at line 39 of file launchers.py.
| codar.cheetah.launchers.Launcher.num_codes |
Definition at line 59 of file launchers.py.
| codar.cheetah.launchers.Launcher.output_directory |
Definition at line 58 of file launchers.py.
|
static |
Definition at line 46 of file launchers.py.
|
static |
Definition at line 47 of file launchers.py.
|
static |
Definition at line 48 of file launchers.py.
| codar.cheetah.launchers.Launcher.runner_name |
Definition at line 57 of file launchers.py.
| codar.cheetah.launchers.Launcher.scheduler_name |
Definition at line 56 of file launchers.py.
|
static |
Definition at line 44 of file launchers.py.
|
static |
Definition at line 45 of file launchers.py.
|
static |
Definition at line 42 of file launchers.py.
|
static |
Definition at line 43 of file launchers.py.


Two texts can be diffed against each other, generating a list of patches. These patches can then be applied against a third text. If the third text has edits of its own, this version of patch will apply its changes on a best-effort basis, reporting which patches succeeded and which failed.
In this scenario Shakespeare wrote Hamlet in old English, the source document. Then two derivative works were created. One is Hamlet updated to modern English. The other is a Star Trek parody in old English. This demonstrantion creates a list of patches between the source and the modern English version. Then it applies those patches onto the Star Trek parody, thus creating a Star Trek parody in modern English.
| Old Version: |
New Version: |
| Old Version: |
New Version: |


Forest of the Lost [aq61], forest, in Imperia, peasants: 10000
Last updated Turn #125
Forest of the Lost [aq61], forest, in Imperia, peasants: 10000
------------------------------------------------------------------------
30: Overcrowding causes zero peasant deaths.
Routes leaving Forest of the Lost:
North, forest, to Forest of the Lost [ap61], 8 days
East, forest, to Forest of the Lost [aq62], 8 days
South, forest, to Forest of the Lost [ar61], 8 days
West, forest, to Forest of the Lost [aq60], 8 days
Inner locations:
Chronos [ad8z], city, 1 day


Stay alive! And make some sweet tunes while doing so. There are a total of 49 loops that can be mixed for 75 = 16807 "songs." Note: Unity's web player canvas is not very responsive, so play this game on a machine that can fit the whole canvas.


There are many parts and tools that are used in the club and sometime multiple version of the same part to be able to customize your robot. Here is a list of the resources that you might use in your time in robotics. For more information click on any of the image below.


| Document Type | Upload Document | |
|---|---|---|
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|
Allowed only below 150 KB File |
|
| {{row.doctypename}} |
| Relation | Full Name | Age | Class | School | School Name / Enrollment No | |
|---|---|---|---|---|---|---|
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| {{row.relname}} | {{row.fullname}} | {{row.age}} | {{row.classname}} | {{row.othschname}} {{row.schname}} | {{row.enrlmntid}} {{row.othschname}} |
|


| Event name | <%= request.event_name %> |
|---|---|
| Event date | <%= request.event_date %> |
| Event start time | <%= request.event_start_time %> |
| Event end time | <%= request.event_end_time %> |
| Event deadline | <%= request.event_deadline %> |
| Suburb | <%= request.event_suburb %> |
| Type of event | <%= request.event_type %> |
| Number of people | <%= request.noPeople %> |
| Budget | $<%= request.budget %> |
| Food Preparation | <%= request.choice %> |
| Additional Information | <%= request.additional_info %> |
Bid price: $<%= biddings[i].value %>
Comments: <%= biddings[i].info %>
You accepted the bid from:


"In the age of empire, American military leaders – even the insubordinate kind – are inevitably becoming political figures."
Read more on the political savy of General McChrystal:
http://original.antiwar.com/justin/2010/06/22/mcchrystals-challenge/However, Jack Douglass believes this was incompetence, not savy:
http://www.lewrockwell.com/blog/lewrw/archives/60140.htmlHowever, the Rolling Stone journalist says McChrystal is open about his opinions because that is just the way he is:
http://antiwar.com/radio/2010/06/23/michael-hastings-5/


Principal Investigator
|
Ph.D. Physics, MIT, 2003 |
Postdocs
|
Ph.D. Materials Science & Engineering, University of California, Berkeley |
PhD Students
Principal Investigator
|
Ph.D. Physics, MIT, 2003 |
Postdocs
|
Ph.D. Materials Science & Engineering, University of California, Berkeley |
PhD Students
Undergraduate Students
Enze Chen, Materials Science Department |
Brandon Cui, Computer Science Department |
PostDoc Alumni
Qian Yang: Asst. Professor, University of Connecticut |
Ekin Doğuş Çubuk: Researcher, Google Brain |
Mitchell Ong: Postdoctoral Research Staff, Lawrence Livermore National Laboratory |
Tingting Qi: Postdoctoral Research Staff, Lawrence Livermore National Laboratory |
PhD Alumni
Karel-Alexander Duerloo (PhD '15): the Boston Consulting Group |
Yao Li (PhD '17): Data Scientist, Facebook |
Lenson Pellouchoud (PhD '16): Project Scientist, SLAC National Accelerator Laboratory |
Danny Rehn (PhD '18): Los Alamos National Laboratory |
Austin Sendek (PhD '18): Rho AI |
Yuan Shen (PhD '17): Finance Industry |
Qian Yang (PhD '17): Asst. Professor, University of Connecticut |
Yao Zhou (PhD '18): Google |
Other Former Group Members
Alex Anaya: High School Student |
|
Shai Barak: M.S. Electrical Engineering, Stanford University |
|
Shreyas Bhave: Electrical Engineering and Computer Science Undergraduate, University of California, Berkeley |
|
Guillaume Barbier: Institut supérieur d'Electronique de Paris |
|
Marika Buchholz: Symbolic Systems Undergraduate, Stanford University |
|
Michael Chau: High school student, now at University of California, Berkeley |
|
Jay Evans: Electrical Engineering Undergraduate, Stanford University |
|
Matthew Ferranti: Management Science and Engineering Undergraduate, Stanford University |
|
Karol Fijalkowski: Assistant Professor, Centre of New Technologies, University of Warsaw, Poland |
|
Matthew Garcia: Materials Science Undergraduate, University of Texas at El Paso |
|
Sean Gedorio: Chemical Engineering Undergraduate, Georgia Institute of Technology |
|
Manuel Haro: High School student, now at University of California, Davis |
|
Sidney Lam: Materials Science Undergraduate, Stanford University |
|
Ilkyu Lee: Applied Physics PhD Student, Stanford University | |
Junning Li: High School Student, now at University of California, Irvine |
|
Antonin Lenfant: Software Development Engineer, Mobeye app |
|
Chase Porter: Product Design Undergraduate, Stanford University |
|
Kerry Wauson: Electrical Engineering Undergraduate, New Mexico State University |
|
Yuanyuan Wen: Materials Science M.S. Student, Stanford University |
|
Nathan Zhao: Applied Physics PhD Student, Stanford University |
Staff Scientist
Centurion 8 nodes with an aggregate of: |


Place an order today by clicking the button below.
Please wait while we get our system ready for you.
There are currently orders in the system.
New Order
Place Order
There was some sort of error.
.


Description: Add handlers to be called when the Deferred object is resolved.
doneCallbacks: Function() A function, or array of functions, that are called when the Deferred is resolved.
doneCallbacks: Function() Optional additional functions, or arrays of functions, that are called when the Deferred is resolved.
The deferred.done()
method accepts one or more arguments, all of which can be either a single function or an array of functions. When the Deferred is resolved, the doneCallbacks are called. Callbacks are executed in the order they were added. Since deferred.done()
returns the deferred object, other methods of the deferred object can be chained to this one, including additional .done()
methods. When the Deferred is resolved, doneCallbacks are executed using the arguments provided to the resolve
or resolveWith
method call in the order they were added. For more information, see the documentation for Deferred object.
$.get("test.php").done(function() {
alert("$.get succeeded");
});
<!DOCTYPE html>

<button>Go</button>

Ready...


Registered
You have successuly registered for the course please check the
course in YOUR COURSES Section.
You have successuly registered for the course please check the
course in YOUR COURSES Section.


| |
The University and Jepson Herbaria are home to multiple flora projects.
The Jepson eFlora is the primary product of the Jepson Flora Project. contains taxonomic treatments for native and naturalized vascular plants occurring in wildlands or otherwise outside of cultivation in California. Documented waifs and some agricultural weeds are also included.
The California Moss eFlora was originally based on three print publications and the previously unpublished moss taxonomic treatments by Dan Norris, but has since had many taxonomic additions. It also contains resources for beginner bryologists.
The California Seaweed eFlora is under construction In addition to updating Marine Algae of California (Abbott & Hollenberg 1976), it will provide a non-technical portal to help novices identify common seaweed species.
The Ecological Flora of California is a component of the Jepson Flora Project. Its aim is to provide a database of ecological information about the California flora.
|


{% extends '../layouts/template.html' %} {% block title %}Check your State Pension {{mvpversion}}{% endblock %} {% block serviceName %}Check your State Pension{% endblock %} {% block main %}
To fill gaps in your National Insurance record and increase your pension, you should:
If you have evidence that it’s wrong you can correct it. If correcting your record fills a gap it may increase your pension.
Check your National Insurance record
You can pay to fill gaps in your record and increase your pension.
your pension estimate is


--- layout: newsstory title: JUST THE LEAGUE LEFT NOW match: DMC Yeltz 0 Moor Green 1 ---
We've never done much in the League Cup, and we haven't done much again. A second round defeat against Moor Green means all we've got left to look forward to is a relegation battle. Hurrah!
Saturday brings the start of that struggle with a visit to Cambridge City , followed by games over the holiday period at home to Worcester and Ilkeston , and away to Moor Green .
As I'm on holiday until after the New Year, the site might not be updated as regularly as usual , but I'll do my best to keep things reasonably recent. Anyhoo, have a jolly Xmas and New Year, and let's hope 2001 brings us better results that 2000 did. :-)
Halesowen Town: Quy; Corns (Owen 70), Ford (Payne 79), Wood, Lloyd, Collins, R. Crisp, Sutton, Bowen, N. Smith, Hines. Sub: Sumnall
Moor Green: De Bont; Mulholland, Hayde, Pope, M. Smith (Baddams 22), Stanley, Woodley, M. Crisp, Martin (Hall 76), Shepherd (Robinson 76), Petty.
Booked: Stanley (53), Wood (63), Robinson (83) Referee: S. Flanaghan (Wednesfield) Attendance: 234
Halesowen bowed out of their involvement in cup football for the season with another disappointing home result to leave them with just one home victory after 15 attempts.
Peter Sutton was guilty of missing two golden one-on-one situations in the first half when he waited too long before blasting at Moor Green goalkeeper Andy De Bont in the 10th and 24th minute. A good build up by Moor Green's Mark Shepherd then set Jae Martin free but Andy Quy turned his effort around the post and just before the break Mark Crisp could only watch his 15 yard effort rebound off the goalpost into the safe arms of Quy.
Sutton screwed another shot just wide in the 51st minute following clever work by Richard Crisp, Neil Smith and Stuart Corns, who enjoyed an impressive debut game. However, it was Moor Green who grabbed the winning goal in the 63rd minute when Craig Woodley was on hand to turn home a rebound off the post after Shepherd's shot had beaten Quy. Ross Collins headed home a 75th minute freekick from Les Hines but the goal was disallowed for an infringement by Sam Bowen and it was the visitors who almost increased their lead late on when Mark Crisp was denied by Quy's fine reflex save.


Project 1
Region Etra: Description: Preparation and orientation of 3D images. Draw and edit 3D graphic maps. Create database. My responsibility was to create the rules and steps to optimize process to maps editing. Map digitize for part of the region cadastre.
Geodesy tolls: Gcarto, ArcGis, GDS Image Orientation, Globo.


--- layout: layout --- {% include research.html %} {% include interests.html %} {% include positions.html %} {% include education.html %} {% include publications.html %}


Own less. Live more.
"Reclaim your home and take back what matters most: Your Time"
We offer downsizing assistance for seniors and their families during major life changes
When adult children can’t tackle the project alone; we will be there to help
We are the extra family member you need, and your guide through the practical steps of life transitions


You can't upload multiple browser builds of the same type into the same release. If you're trying to update your build, add a new release first.
For HTML builds, upload a .zip archive containing all of your build's files and assets. There must be an {{ filename }} file in the root folder.


Large-Scale Project Ideas
- Finish Mustang Madness - Multiplayer Rock/Paper/Scissors Game
- Link Stampede - Chrome Extension that allows you to see if a link is blocked by CIPA filter without clicking it.
- Byte Club Site Redesign - incorporate responsive design, login and account system
- Hour-of-Code Event during December (CSEd week)
- projecteuler.net
- USACO problems
- 3D game design and modeling(yes, it is a job)
- Byte Me Game 4
- Partnership with Science club and Robotics
- Certificates for getting past KhanAcademy tutorial things
- And other projects
Beginner Projects
- Complete 1 or more courses on the following:
- Build a text game (Any language)
- Build a static webpage (HTML/CSS)
- Build a clone of your favorite website (HTML/CSS/JS)
- Build a responsive website (mobile and desktop) using Bootstrap, Skeleton, or other responsive framework.
- Build an Area or Volume Calculator
- Build a Cookie-clicker clone (App Inventor, Scratch, ProcessingJS)
- Build a Space Invaders clone (App Inventor, Scratch, ProcessingJS)
- Build a random sentence generator (Python, ProcessingJS)
- Build a Guess My Number game(Python)
- Create a simple physics simulation, like a bouncing ball with gravity (VPython, ProcessingJS)
- Create an animation that can be used in a static website (ProcessingJS)
- Create a Fortune Teller program, like a Magic 8-ball (Any language)
Intermediate Projects
- Build a tic-tac-toe game (Python, ProcessingJS, other language)
- Include an AI to play against!
- Build a web scraper that pulls data from a public website (Python, Ruby, Node.js)
- Create a Command Line Interface to interact with your web scraper (Python, Ruby)
- Implement a web API into a web-based project (HTML/CSS/JS)
- Implement an OAuth sign-in to a web-based project (HTML/CSS/JS, Ruby, Python)
- Simulate a Physics process (Newtonian Gravity, Conservation of Momentum in Collisions, Projectile Motion, etc.)
- Build an online whiteboard using HTML5 canvases
- Create an Address Book program with a command line interface
- Create an online To-Do List
- Implement the Twitter API to create a Twitter Bot
Advanced Projects
- Implement a Topic Analysis algorithm for analyzing the topic of a string of text
- Create a single-page web app (Ruby, Python, HTML/CSS/JS)
- Create a simple Node.js web server
- Create a chat program (Node.js/Socket.io, Python, Ruby)
- Create an Instagram clone (or other Social Net) (Ruby, Python, Node.js, HTML/CSS/JS)
Still can't find a good idea? Check out this awesome list of project ideas.


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java.lang.Object | +--org.netbeans.a11y.AccessibilityTestCase
An abstract class defining a test case for accessibility tests.
| Field Summary | |
protected java.io.PrintWriter |
writer
The writer that the report is sent to. |
| Constructor Summary | |
AccessibilityTestCase()
|
| Method Summary | |
void |
execute()
Run the test. |
java.lang.String |
getDescription()
Get a description of this test. |
static TestSettings |
initializeSettings(java.lang.String fileName)
Initialize Test Settings from file fileName, if loading fails - return default settings. |
abstract java.lang.String |
setResultFile()
Initialize name of result file |
abstract java.lang.String |
setSettingsFile()
Initialize name of settings file |
abstract java.awt.Component |
setUp()
Initialize the test. |
abstract void |
tearDown()
Clean up after performing the test. |
| Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
| Field Detail |
protected java.io.PrintWriter writer
| Constructor Detail |
public AccessibilityTestCase()
| Method Detail |
public void execute()
public static TestSettings initializeSettings(java.lang.String fileName)
fileName
- file consists Test Settings
public abstract java.lang.String setSettingsFile()
The implementation of this method should return the settings file name
public abstract java.lang.String setResultFile()
The implementation of this method should return the result file name
public abstract java.awt.Component setUp()
The implementation of this method should create the component and make it visible if necessary.
public abstract void tearDown()
Typically, this will be closing dialogs, etc. This method
should execute cleanly even if setUp
failed.
public java.lang.String getDescription()
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Welcome to our BusMall product market research center! 100% of these products are extremely useful, and purchasing them will vastly improve the quality of your life.
Welcome to our BusMall product market research center! 100% of these products are extremely useful, and purchasing them will vastly improve the quality of your life.


Results List Formatter
The results list formatter is used to rearrange the order of the columns in the results list.
Press the up button to move the selected column up in the list [further to the left in the results list]
Press the down button to move the selected column down in the list [further to the right in the results list]
Press the OK button to save your new format and redisplay the results list
Press the Cancel button to discard any changes and return to the main screen


class Mail::TestMailer
The TestMailer is a bare bones mailer that does nothing. It is useful when you are testing.
It also provides a template of the minimum methods you require to implement if you want to make a custom mailer for Mail
Attributes
settings[RW]
Public Class Methods
deliveries()
click to toggle source
Provides a store of all the emails sent with the TestMailer so you can check them.
# File lib/mail/network/delivery_methods/test_mailer.rb, line 13 def TestMailer.deliveries @@deliveries ||= [] end
deliveries=(val)
click to toggle source
Allows you to over write the default deliveries store from an array to some other object. If you just want to clear the store, call ::deliveries.clear.
If you place another object here, please make sure it responds to:
-
<< (message)
-
clear
-
length
-
size
-
and other common Array methods
# File lib/mail/network/delivery_methods/test_mailer.rb, line 28 def TestMailer.deliveries=(val) @@deliveries = val end
new(values)
click to toggle source
# File lib/mail/network/delivery_methods/test_mailer.rb, line 32 def initialize(values) @settings = values.dup end
Public Instance Methods
deliver!(mail)
click to toggle source
# File lib/mail/network/delivery_methods/test_mailer.rb, line 38 def deliver!(mail) check_delivery_params(mail) Mail::TestMailer.deliveries << mail end


§11. Effective upon the admission of the State of Hawaii into the Union--
(a) the last paragraph of section 501 of title 28, United States Code, is repealed;
(b) the first sentence of subsection (a) of section 504 of title 28, United States Code, is amended by striking out at the end thereof the words ", except in the district of Hawaii, where the term shall be six years";
(c) the first sentence of subsection (c) of section 541 of title 28, United States Code, is amended by striking out at the end thereof the words ", except in the district of Hawaii where the term shall be six years"; and
(d) subsection (d) of section 541 of title 28, United States Code is repealed.
Cross References
See Public Law 89-554, 80 Stat 378, 660.


We are final year engineering students at BITS Pilani, Hyderabad Campus
4th year Computer Science
4th year Computer Science Student